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Items: 1 to 50 of 153

1.

Sexual Quality of Life and Satisfaction With Penile Prostheses.

Barton GJ, Carlos EC, Lentz AC.

Sex Med Rev. 2018 Nov 29. pii: S2050-0521(18)30113-6. doi: 10.1016/j.sxmr.2018.10.003. [Epub ahead of print] Review.

PMID:
30503794
2.

The Relationship Between Medial Gastrocnemius Lengthening Properties and Stretch Reflexes in Cerebral Palsy.

Bar-On L, Kalkman BM, Cenni F, Schless SH, Molenaers G, Maganaris CN, Bass A, Holmes G, Barton GJ, O'Brien TD, Desloovere K.

Front Pediatr. 2018 Oct 4;6:259. doi: 10.3389/fped.2018.00259. eCollection 2018.

3.

Data on items of AKUSSI in Alkaptonuria collected over three years from the United Kingdom National Alkaptonuria Centre and the impact of nitisinone.

Griffin R, Psarelli EE, Cox TF, Khedr M, Milan AM, Davison AS, Hughes AT, Usher JL, Taylor S, Loftus N, Daroszewska A, West E, Jones A, Briggs M, Fisher M, McCormick M, Judd S, Vinjamuri S, Sireau N, Dillon JP, Devine JM, Hughes G, Harrold J, Barton GJ, Jarvis JC, Gallagher JA, Ranganath LR.

Data Brief. 2018 Sep 12;20:1620-1628. doi: 10.1016/j.dib.2018.09.021. eCollection 2018 Oct.

4.

Muscle and tendon lengthening behaviour of the medial gastrocnemius during ankle joint rotation in children with cerebral palsy.

Kalkman BM, Bar-On L, Cenni F, Maganaris CN, Bass A, Holmes G, Desloovere K, Barton GJ, O'Brien TD.

Exp Physiol. 2018 Oct;103(10):1367-1376. doi: 10.1113/EP087053. Epub 2018 Sep 13.

PMID:
30091806
5.

Nitisinone arrests ochronosis and decreases rate of progression of Alkaptonuria: Evaluation of the effect of nitisinone in the United Kingdom National Alkaptonuria Centre.

Ranganath LR, Khedr M, Milan AM, Davison AS, Hughes AT, Usher JL, Taylor S, Loftus N, Daroszewska A, West E, Jones A, Briggs M, Fisher M, McCormick M, Judd S, Vinjamuri S, Griffin R, Psarelli EE, Cox TF, Sireau N, Dillon JP, Devine JM, Hughes G, Harrold J, Barton GJ, Jarvis JC, Gallagher JA.

Mol Genet Metab. 2018 Sep;125(1-2):127-134. doi: 10.1016/j.ymgme.2018.07.011. Epub 2018 Jul 24.

PMID:
30055994
6.

Substrate and flow characteristics associated with White Sturgeon recruitment in the Columbia River Basin.

Hatten JR, Parsley MJ, Barton GJ, Batt TR, Fosness RL.

Heliyon. 2018 May 21;4(5):e00629. doi: 10.1016/j.heliyon.2018.e00629. eCollection 2018 May.

7.

JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure.

Troshin PV, Procter JB, Sherstnev A, Barton DL, Madeira F, Barton GJ.

Bioinformatics. 2018 Jun 1;34(11):1939-1940. doi: 10.1093/bioinformatics/bty045.

8.

Correction: A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase.

Britto-Borges T, Barton GJ.

PLoS One. 2017 Dec 27;12(12):e0190461. doi: 10.1371/journal.pone.0190461. eCollection 2017.

9.

Medial gastrocnemius muscle stiffness cannot explain the increased ankle joint range of motion following passive stretching in children with cerebral palsy.

Kalkman BM, Bar-On L, Cenni F, Maganaris CN, Bass A, Holmes G, Desloovere K, Barton GJ, O'Brien TD.

Exp Physiol. 2018 Mar 1;103(3):350-357. doi: 10.1113/EP086738. Epub 2018 Jan 31.

PMID:
29280208
10.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.

Glusman G, Rose PW, Prlić A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW.

Genome Med. 2017 Dec 18;9(1):113. doi: 10.1186/s13073-017-0509-y. Review.

11.

A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase.

Britto-Borges T, Barton GJ.

PLoS One. 2017 Sep 8;12(9):e0184405. doi: 10.1371/journal.pone.0184405. eCollection 2017. Erratum in: PLoS One. 2017 Dec 27;12 (12 ):e0190461.

12.

Achilles tendon moment arm length is smaller in children with cerebral palsy than in typically developing children.

Kalkman BM, Bar-On L, Cenni F, Maganaris CN, Bass A, Holmes G, Desloovere K, Barton GJ, O'Brien TD.

J Biomech. 2017 May 3;56:48-54. doi: 10.1016/j.jbiomech.2017.02.027. Epub 2017 Mar 3.

PMID:
28318605
13.

Improved annotation with de novo transcriptome assembly in four social amoeba species.

Singh R, Lawal HM, Schilde C, Glöckner G, Barton GJ, Schaap P, Cole C.

BMC Genomics. 2017 Jan 31;18(1):120. doi: 10.1186/s12864-017-3505-0.

14.

Adenylate cyclase A acting on PKA mediates induction of stalk formation by cyclic diguanylate at the Dictyostelium organizer.

Chen ZH, Singh R, Cole C, Lawal HM, Schilde C, Febrer M, Barton GJ, Schaap P.

Proc Natl Acad Sci U S A. 2017 Jan 17;114(3):516-521. doi: 10.1073/pnas.1608393114. Epub 2017 Jan 5.

15.

Interpreting sources of variation in clinical gait analysis: A case study.

King SL, Barton GJ, Ranganath LR.

Gait Posture. 2017 Feb;52:1-4. doi: 10.1016/j.gaitpost.2016.10.022. Epub 2016 Nov 8.

PMID:
27842282
16.

Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Oct;22(10):1641. doi: 10.1261/rna.058339.116. No abstract available.

17.

AlmostSignificant: simplifying quality control of high-throughput sequencing data.

Ward J, Cole C, Febrer M, Barton GJ.

Bioinformatics. 2016 Dec 15;32(24):3850-3851. Epub 2016 Aug 24.

18.

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Schurch NJ, Schofield P, Gierliński M, Cole C, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson GG, Owen-Hughes T, Blaxter M, Barton GJ.

RNA. 2016 Jun;22(6):839-51. doi: 10.1261/rna.053959.115. Epub 2016 Mar 28. Erratum in: RNA. 2016 Oct;22(10 ):1641.

19.

Early Intervention during Acute Stone Admissions: Revealing "The Weekend Effect" in Urological Practice.

Blackwell RH, Barton GJ, Kothari AN, Zapf MA, Flanigan RC, Kuo PC, Gupta GN.

J Urol. 2016 Jul;196(1):124-30. doi: 10.1016/j.juro.2016.01.056. Epub 2016 Jan 22.

20.

Authors' Reply.

Bartosiak KA, Gil JA, Degreef BK, Barton GJ, Chudik SC.

Arthroscopy. 2015 Dec;31(12):2285-6. doi: 10.1016/j.arthro.2015.09.002. No abstract available.

PMID:
26652148
21.

The Effect of Compression Stockings on Cerebral Desaturation Events in Obese Patients Undergoing Shoulder Arthroscopy in the Beach-Chair Position.

Tauchen AJ, Salazar D, Barton GJ, Francois A, Tonino P, Garbis NG, Evans D.

Arthroscopy. 2015 Dec;31(12):2352-64. doi: 10.1016/j.arthro.2015.06.017. Epub 2015 Aug 3.

PMID:
26248495
22.

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Gierliński M, Cole C, Schofield P, Schurch NJ, Sherstnev A, Singh V, Wrobel N, Gharbi K, Simpson G, Owen-Hughes T, Blaxter M, Barton GJ.

Bioinformatics. 2015 Nov 15;31(22):3625-30. doi: 10.1093/bioinformatics/btv425. Epub 2015 Jul 23.

23.

Transhumeral Portal for Arthroscopic Glenohumeral Resurfacing Procedures: A Cadaveric Study of the Safety and Accuracy.

Bartosiak KA, Gil JA, Degreef BK, Barton GJ, Chudik SC.

Arthroscopy. 2015 Nov;31(11):2207-12. doi: 10.1016/j.arthro.2015.06.003. Epub 2015 Jul 15.

PMID:
26188784
24.

Proteotoxic stress reprograms the chromatin landscape of SUMO modification.

Seifert A, Schofield P, Barton GJ, Hay RT.

Sci Signal. 2015 Jul 7;8(384):rs7. doi: 10.1126/scisignal.aaa2213.

PMID:
26152697
25.

JPred4: a protein secondary structure prediction server.

Drozdetskiy A, Cole C, Procter J, Barton GJ.

Nucleic Acids Res. 2015 Jul 1;43(W1):W389-94. doi: 10.1093/nar/gkv332. Epub 2015 Apr 16.

26.

Age-Related Deviation of Gait from Normality in Alkaptonuria.

Barton GJ, King SL, Robinson MA, Hawken MB, Ranganath LR.

JIMD Rep. 2015;24:39-44. doi: 10.1007/8904_2015_431. Epub 2015 Mar 19.

27.

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides.

Madeira F, Tinti M, Murugesan G, Berrett E, Stafford M, Toth R, Cole C, MacKintosh C, Barton GJ.

Bioinformatics. 2015 Jul 15;31(14):2276-83. doi: 10.1093/bioinformatics/btv133. Epub 2015 Mar 3.

28.

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo.

Olivera-Martinez I, Schurch N, Li RA, Song J, Halley PA, Das RM, Burt DW, Barton GJ, Storey KG.

Development. 2014 Aug;141(16):3266-76. doi: 10.1242/dev.112623. Epub 2014 Jul 25.

29.

Primary and submovement control of aiming in C6 tetraplegics following posterior deltoid transfer.

Robinson MA, Elliott D, Hayes SJ, Barton GJ, Bennett SJ.

J Neuroeng Rehabil. 2014 Jul 23;11:112. doi: 10.1186/1743-0003-11-112.

30.

Manipulation of visual biofeedback during gait with a time delayed adaptive Virtual Mirror Box.

Barton GJ, De Asha AR, van Loon EC, Geijtenbeek T, Robinson MA.

J Neuroeng Rehabil. 2014 Jun 10;11:101. doi: 10.1186/1743-0003-11-101.

31.

Elevated O-GlcNAc levels activate epigenetically repressed genes and delay mouse ESC differentiation without affecting naïve to primed cell transition.

Speakman CM, Domke TC, Wongpaiboonwattana W, Sanders K, Mudaliar M, van Aalten DM, Barton GJ, Stavridis MP.

Stem Cells. 2014 Oct;32(10):2605-15. doi: 10.1002/stem.1761.

32.

Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis.

Cole C, Kroboth K, Schurch NJ, Sandilands A, Sherstnev A, O'Regan GM, Watson RM, McLean WH, Barton GJ, Irvine AD, Brown SJ.

J Allergy Clin Immunol. 2014 Jul;134(1):82-91. doi: 10.1016/j.jaci.2014.04.021. Epub 2014 May 28.

33.

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.

Schurch NJ, Cole C, Sherstnev A, Song J, Duc C, Storey KG, McLean WH, Brown SJ, Simpson GG, Barton GJ.

PLoS One. 2014 Apr 10;9(4):e94270. doi: 10.1371/journal.pone.0094270. eCollection 2014.

34.

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.

Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG.

PLoS Genet. 2013 Oct;9(10):e1003867. doi: 10.1371/journal.pgen.1003867. Epub 2013 Oct 31.

35.

The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation.

Lyons R, Iwase A, Gänsewig T, Sherstnev A, Duc C, Barton GJ, Hanada K, Higuchi-Takeuchi M, Matsui M, Sugimoto K, Kazan K, Simpson GG, Shirasu K.

Sci Rep. 2013 Oct 9;3:2866. doi: 10.1038/srep02866.

36.

Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects.

Saunders SP, Goh CS, Brown SJ, Palmer CN, Porter RM, Cole C, Campbell LE, Gierlinski M, Barton GJ, Schneider G, Balmain A, Prescott AR, Weidinger S, Baurecht H, Kabesch M, Gieger C, Lee YA, Tavendale R, Mukhopadhyay S, Turner SW, Madhok VB, Sullivan FM, Relton C, Burn J, Meggitt S, Smith CH, Allen MA, Barker JN, Reynolds NJ, Cordell HJ, Irvine AD, McLean WH, Sandilands A, Fallon PG.

J Allergy Clin Immunol. 2013 Nov;132(5):1121-9. doi: 10.1016/j.jaci.2013.08.046. Epub 2013 Sep 29.

37.

A gait index may underestimate changes of gait: a comparison of the Movement Deviation Profile and the Gait Deviation Index.

Barton GJ, Hawken MB, Holmes G, Schwartz MH.

Comput Methods Biomech Biomed Engin. 2015;18(1):57-63. doi: 10.1080/10255842.2013.776549. Epub 2013 Mar 22.

PMID:
23521124
38.

The effects of virtual reality game training on trunk to pelvis coupling in a child with cerebral palsy.

Barton GJ, Hawken MB, Foster RJ, Holmes G, Butler PB.

J Neuroeng Rehabil. 2013 Feb 7;10:15. doi: 10.1186/1743-0003-10-15.

39.

PGE(2) induces macrophage IL-10 production and a regulatory-like phenotype via a protein kinase A-SIK-CRTC3 pathway.

MacKenzie KF, Clark K, Naqvi S, McGuire VA, Nöehren G, Kristariyanto Y, van den Bosch M, Mudaliar M, McCarthy PC, Pattison MJ, Pedrioli PG, Barton GJ, Toth R, Prescott A, Arthur JS.

J Immunol. 2013 Jan 15;190(2):565-77. doi: 10.4049/jimmunol.1202462. Epub 2012 Dec 14.

40.

Haploinsufficiency for AAGAB causes clinically heterogeneous forms of punctate palmoplantar keratoderma.

Pohler E, Mamai O, Hirst J, Zamiri M, Horn H, Nomura T, Irvine AD, Moran B, Wilson NJ, Smith FJ, Goh CS, Sandilands A, Cole C, Barton GJ, Evans AT, Shimizu H, Akiyama M, Suehiro M, Konohana I, Shboul M, Teissier S, Boussofara L, Denguezli M, Saad A, Gribaa M, Dopping-Hepenstal PJ, McGrath JA, Brown SJ, Goudie DR, Reversade B, Munro CS, McLean WH.

Nat Genet. 2012 Nov;44(11):1272-6. doi: 10.1038/ng.2444. Epub 2012 Oct 14.

41.

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.

Nat Struct Mol Biol. 2012 Aug;19(8):845-52. doi: 10.1038/nsmb.2345. Epub 2012 Jul 22.

42.

A marker based kinematic method of identifying initial contact during gait suitable for use in real-time visual feedback applications.

De Asha AR, Robinson MA, Barton GJ.

Gait Posture. 2012 Jul;36(3):650-2. doi: 10.1016/j.gaitpost.2012.04.016. Epub 2012 Jun 15.

PMID:
22704579
43.

The kinomes of apicomplexan parasites.

Miranda-Saavedra D, Gabaldón T, Barton GJ, Langsley G, Doerig C.

Microbes Infect. 2012 Aug;14(10):796-810. doi: 10.1016/j.micinf.2012.04.007. Epub 2012 Apr 26. Review.

PMID:
22587893
44.

Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation.

Muramoto T, Cannon D, Gierlinski M, Corrigan A, Barton GJ, Chubb JR.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7350-5. doi: 10.1073/pnas.1117603109. Epub 2012 Apr 23.

45.

PTEN protein phosphatase activity correlates with control of gene expression and invasion, a tumor-suppressing phenotype, but not with AKT activity.

Tibarewal P, Zilidis G, Spinelli L, Schurch N, Maccario H, Gray A, Perera NM, Davidson L, Barton GJ, Leslie NR.

Sci Signal. 2012 Feb 28;5(213):ra18. doi: 10.1126/scisignal.2002138.

46.

Human box C/D snoRNA processing conservation across multiple cell types.

Scott MS, Ono M, Yamada K, Endo A, Barton GJ, Lamond AI.

Nucleic Acids Res. 2012 Apr;40(8):3676-88. doi: 10.1093/nar/gkr1233. Epub 2011 Dec 22.

47.

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization.

Gkikopoulos T, Schofield P, Singh V, Pinskaya M, Mellor J, Smolle M, Workman JL, Barton GJ, Owen-Hughes T.

Science. 2011 Sep 23;333(6050):1758-60. doi: 10.1126/science.1206097.

48.

Computational approaches to selecting and optimising targets for structural biology.

Overton IM, Barton GJ.

Methods. 2011 Sep;55(1):3-11. doi: 10.1016/j.ymeth.2011.08.014. Epub 2011 Aug 27.

49.

NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins.

Scott MS, Troshin PV, Barton GJ.

BMC Bioinformatics. 2011 Aug 3;12:317. doi: 10.1186/1471-2105-12-317.

50.

Java bioinformatics analysis web services for multiple sequence alignment--JABAWS:MSA.

Troshin PV, Procter JB, Barton GJ.

Bioinformatics. 2011 Jul 15;27(14):2001-2. doi: 10.1093/bioinformatics/btr304. Epub 2011 May 18.

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