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Items: 30

1.

Stochastic self-tuning hybrid algorithm for reaction-diffusion systems.

Ruiz-Martínez Á, Bartol TM, Sejnowski TJ, Tartakovsky DM.

J Chem Phys. 2019 Dec 28;151(24):244117. doi: 10.1063/1.5125022.

PMID:
31893874
2.

A multi-state model of the CaMKII dodecamer suggests a role for calmodulin in maintenance of autophosphorylation.

Pharris MC, Patel NM, VanDyk TG, Bartol TM, Sejnowski TJ, Kennedy MB, Stefan MI, Kinzer-Ursem TL.

PLoS Comput Biol. 2019 Dec 23;15(12):e1006941. doi: 10.1371/journal.pcbi.1006941. eCollection 2019 Dec.

3.

A Discrete Presynaptic Vesicle Cycle for Neuromodulator Receptors.

Jullié D, Stoeber M, Sibarita JB, Zieger HL, Bartol TM, Arttamangkul S, Sejnowski TJ, Hosy E, von Zastrow M.

Neuron. 2019 Dec 5. pii: S0896-6273(19)30979-1. doi: 10.1016/j.neuron.2019.11.016. [Epub ahead of print]

PMID:
31837915
4.

Mitochondrial morphology provides a mechanism for energy buffering at synapses.

Garcia GC, Bartol TM, Phan S, Bushong EA, Perkins G, Sejnowski TJ, Ellisman MH, Skupin A.

Sci Rep. 2019 Dec 4;9(1):18306. doi: 10.1038/s41598-019-54159-1.

5.

Geometric principles of second messenger dynamics in dendritic spines.

Cugno A, Bartol TM, Sejnowski TJ, Iyengar R, Rangamani P.

Sci Rep. 2019 Aug 12;9(1):11676. doi: 10.1038/s41598-019-48028-0.

6.

Learning moment closure in reaction-diffusion systems with spatial dynamic Boltzmann distributions.

Ernst OK, Bartol TM, Sejnowski TJ, Mjolsness E.

Phys Rev E. 2019 Jun;99(6-1):063315. doi: 10.1103/PhysRevE.99.063315.

7.

MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework.

Tapia JJ, Saglam AS, Czech J, Kuczewski R, Bartol TM, Sejnowski TJ, Faeder JR.

Methods Mol Biol. 2019;1945:203-229. doi: 10.1007/978-1-4939-9102-0_9.

8.

Pre-post synaptic alignment through neuroligin-1 tunes synaptic transmission efficiency.

Haas KT, Compans B, Letellier M, Bartol TM, Grillo-Bosch D, Sejnowski TJ, Sainlos M, Choquet D, Thoumine O, Hosy E.

Elife. 2018 Jul 25;7. pii: e31755. doi: 10.7554/eLife.31755.

9.

Efficient models of polymerization applied to FtsZ ring assembly in Escherichia coli.

Ruiz-Martínez Á, Bartol TM, Sejnowski TJ, Tartakovsky DM.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4933-4938. doi: 10.1073/pnas.1719391115. Epub 2018 Apr 23.

10.

Long-term potentiation expands information content of hippocampal dentate gyrus synapses.

Bromer C, Bartol TM, Bowden JB, Hubbard DD, Hanka DC, Gonzalez PV, Kuwajima M, Mendenhall JM, Parker PH, Abraham WC, Sejnowski TJ, Harris KM.

Proc Natl Acad Sci U S A. 2018 Mar 6;115(10):E2410-E2418. doi: 10.1073/pnas.1716189115. Epub 2018 Feb 20.

11.

Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake Efficiency.

Kaya C, Cheng MH, Block ER, Bartol TM, Sejnowski TJ, Sorkin A, Faeder JR, Bahar I.

eNeuro. 2018 Feb 5;5(1). pii: ENEURO.0298-17.2017. doi: 10.1523/ENEURO.0298-17.2017. eCollection 2018 Jan-Feb.

12.

Efficient Multiscale Models of Polymer Assembly.

Ruiz-Martinez A, Bartol TM, Sejnowski TJ, Tartakovsky DM.

Biophys J. 2016 Jul 12;111(1):185-96. doi: 10.1016/j.bpj.2016.05.022.

13.

Nanoconnectomic upper bound on the variability of synaptic plasticity.

Bartol TM, Bromer C, Kinney J, Chirillo MA, Bourne JN, Harris KM, Sejnowski TJ.

Elife. 2015 Nov 30;4:e10778. doi: 10.7554/eLife.10778.

14.

Computational reconstitution of spine calcium transients from individual proteins.

Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB.

Front Synaptic Neurosci. 2015 Oct 7;7:17. doi: 10.3389/fnsyn.2015.00017. eCollection 2015.

15.

Multi-state modeling of biomolecules.

Stefan MI, Bartol TM, Sejnowski TJ, Kennedy MB.

PLoS Comput Biol. 2014 Sep 25;10(9):e1003844. doi: 10.1371/journal.pcbi.1003844. eCollection 2014 Sep.

16.

Anomalous diffusion of single particles in cytoplasm.

Regner BM, Vučinić D, Domnisoru C, Bartol TM, Hetzer MW, Tartakovsky DM, Sejnowski TJ.

Biophys J. 2013 Apr 16;104(8):1652-60. doi: 10.1016/j.bpj.2013.01.049.

17.

Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal.

Nadkarni S, Bartol TM, Stevens CF, Sejnowski TJ, Levine H.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14657-62. doi: 10.1073/pnas.1211971109. Epub 2012 Aug 20.

18.

Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil.

Kinney JP, Spacek J, Bartol TM, Bajaj CL, Harris KM, Sejnowski TJ.

J Comp Neurol. 2013 Feb 1;521(2):448-64. doi: 10.1002/cne.23181.

19.

Modelling vesicular release at hippocampal synapses.

Nadkarni S, Bartol TM, Sejnowski TJ, Levine H.

PLoS Comput Biol. 2010 Nov 11;6(11):e1000983. doi: 10.1371/journal.pcbi.1000983.

20.

Imbalance of ionic conductances contributes to diverse symptoms of demyelination.

Coggan JS, Prescott SA, Bartol TM, Sejnowski TJ.

Proc Natl Acad Sci U S A. 2010 Nov 30;107(48):20602-9. doi: 10.1073/pnas.1013798107. Epub 2010 Oct 25.

21.

A comparison of deterministic and stochastic simulations of neuronal vesicle release models.

Modchang C, Nadkarni S, Bartol TM, Triampo W, Sejnowski TJ, Levine H, Rappel WJ.

Phys Biol. 2010 May 26;7(2):026008. doi: 10.1088/1478-3975/7/2/026008.

22.

FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES.

Kerr RA, Bartol TM, Kaminsky B, Dittrich M, Chang JC, Baden SB, Sejnowski TJ, Stiles JR.

SIAM J Sci Comput. 2008 Oct 13;30(6):3126.

23.

Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier.

Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ.

Biophys J. 2008 Sep 15;95(6):2624-35. doi: 10.1529/biophysj.108.132167. Epub 2008 Jun 13.

24.

Calmodulin activation by calcium transients in the postsynaptic density of dendritic spines.

Keller DX, Franks KM, Bartol TM Jr, Sejnowski TJ.

PLoS One. 2008 Apr 30;3(4):e2045. doi: 10.1371/journal.pone.0002045.

25.

Hybrid reflecting objectives for functional multiphoton microscopy in turbid media.

Vucinić D, Bartol TM Jr, Sejnowski TJ.

Opt Lett. 2006 Aug 15;31(16):2447-9.

26.

Evidence for ectopic neurotransmission at a neuronal synapse.

Coggan JS, Bartol TM, Esquenazi E, Stiles JR, Lamont S, Martone ME, Berg DK, Ellisman MH, Sejnowski TJ.

Science. 2005 Jul 15;309(5733):446-51.

27.

Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.

Sosinsky GE, Deerinck TJ, Greco R, Buitenhuys CH, Bartol TM, Ellisman MH.

Neuroinformatics. 2005;3(2):133-62.

PMID:
15988042
28.

A Monte Carlo model reveals independent signaling at central glutamatergic synapses.

Franks KM, Bartol TM Jr, Sejnowski TJ.

Biophys J. 2002 Nov;83(5):2333-48.

29.
30.

Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction.

Bartol TM Jr, Land BR, Salpeter EE, Salpeter MM.

Biophys J. 1991 Jun;59(6):1290-307.

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