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Items: 36

1.

Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL).

Roehner N, Bartley B, Beal J, McLaughlin J, Pocock M, Zhang M, Zundel Z, Myers CJ.

ACS Synth Biol. 2019 Jul 19;8(7):1519-1523. doi: 10.1021/acssynbio.9b00092. Epub 2019 Jul 1.

PMID:
31260271
2.

Synthetic Biology Open Language (SBOL) Version 2.3.

Madsen C, Goñi Moreno A, P U, Palchick Z, Roehner N, Atallah C, Bartley B, Choi K, Cox RS, Gorochowski T, Grünberg R, Macklin C, McLaughlin J, Meng X, Nguyen T, Pocock M, Samineni M, Scott-Brown J, Tarter Y, Zhang M, Zhang Z, Zundel Z, Beal J, Bissell M, Clancy K, Gennari JH, Misirli G, Myers C, Oberortner E, Sauro H, Wipat A.

J Integr Bioinform. 2019 Jun 13. pii: /j/jib.ahead-of-print/jib-2019-0025/jib-2019-0025.xml. doi: 10.1515/jib-2019-0025. [Epub ahead of print]

PMID:
31199770
3.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, Nguyen T, Le Novere N, Pocock M, Sauro H, Scott-Brown J, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2019 Jun 13. pii: /j/jib.ahead-of-print/jib-2018-0101/jib-2018-0101.xml. doi: 10.1515/jib-2018-0101. [Epub ahead of print]

4.

pySBOL: A Python Package for Genetic Design Automation and Standardization.

Bartley BA, Choi K, Samineni M, Zundel Z, Nguyen T, Myers CJ, Sauro HM.

ACS Synth Biol. 2019 Jul 19;8(7):1515-1518. doi: 10.1021/acssynbio.8b00336. Epub 2018 Dec 6.

PMID:
30424601
5.

Synthetic Biology Open Language (SBOL) Version 2.2.0.

Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari JH, Myers C, Sauro H, Wipat A.

J Integr Bioinform. 2018 Apr 2;15(1). pii: /j/jib.2018.15.issue-1/jib-2018-0001/jib-2018-0001.xml. doi: 10.1515/jib-2018-0001.

6.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2018 Mar 19;15(1). pii: /j/jib.2018.15.issue-1/jib-2017-0074/jib-2017-0074.xml. doi: 10.1515/jib-2017-0074.

7.

Synthetic Biology: Engineering Living Systems from Biophysical Principles.

Bartley BA, Kim K, Medley JK, Sauro HM.

Biophys J. 2017 Mar 28;112(6):1050-1058. doi: 10.1016/j.bpj.2017.02.013. Review.

8.

Synthetic Biology Open Language (SBOL) Version 2.1.0.

Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari J, Myers C, Sauro H, Wipat A.

J Integr Bioinform. 2016 Dec 18;13(3):291. doi: 10.2390/biecoll-jib-2016-291.

PMID:
28187407
9.

DNAplotlib: Programmable Visualization of Genetic Designs and Associated Data.

Der BS, Glassey E, Bartley BA, Enghuus C, Goodman DB, Gordon DB, Voigt CA, Gorochowski TE.

ACS Synth Biol. 2017 Jul 21;6(7):1115-1119. doi: 10.1021/acssynbio.6b00252. Epub 2016 Oct 27.

PMID:
27744689
10.

Sharing Structure and Function in Biological Design with SBOL 2.0.

Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Grünberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, Gennari JH, Wipat A, Sauro HM, Myers CJ.

ACS Synth Biol. 2016 Jun 17;5(6):498-506. doi: 10.1021/acssynbio.5b00215. Epub 2016 May 4.

PMID:
27111421
11.

Management of mental health patients in Victorian emergency departments: A 10 year follow-up study.

Alarcon Manchego P, Knott J, Graudins A, Bartley B, Mitra B.

Emerg Med Australas. 2015 Dec;27(6):529-536. doi: 10.1111/1742-6723.12500. Epub 2015 Nov 24.

PMID:
26600196
12.

Synthetic Biology Open Language (SBOL) Version 2.0.0.

Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H.

J Integr Bioinform. 2015 Sep 4;12(2):272. doi: 10.2390/biecoll-jib-2015-272.

PMID:
26528570
13.

Controlling E. coli Gene Expression Noise.

Kim KH, Choi K, Bartley B, Sauro HM.

IEEE Trans Biomed Circuits Syst. 2015 Aug;9(4):497-504. doi: 10.1109/TBCAS.2015.2461135. Epub 2015 Sep 10.

PMID:
26372647
14.

Australasian disasters of national significance: an epidemiological analysis, 1900-2012.

Bradt DA, Bartley B, Hibble BA, Varshney K.

Emerg Med Australas. 2015 Apr;27(2):132-8. doi: 10.1111/1742-6723.12357. Epub 2015 Feb 5.

PMID:
25656005
15.

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM.

Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6.

PMID:
24911500
16.

Oxidation-resistant silver nanostructures for ultrastable plasmonic applications.

Sachan R, Ramos V, Malasi A, Yadavali S, Bartley B, Garcia H, Duscher G, Kalyanaraman R.

Adv Mater. 2013 Apr 11;25(14):2045-50. doi: 10.1002/adma.201204920. Epub 2013 Feb 18.

PMID:
23417783
17.

High phosphate feeding promotes mineral and bone abnormalities in mice with chronic kidney disease.

Lau WL, Linnes M, Chu EY, Foster BL, Bartley BA, Somerman MJ, Giachelli CM.

Nephrol Dial Transplant. 2013 Jan;28(1):62-9. doi: 10.1093/ndt/gfs333. Epub 2012 Oct 8.

18.

Computational tools for metabolic engineering.

Copeland WB, Bartley BA, Chandran D, Galdzicki M, Kim KH, Sleight SC, Maranas CD, Sauro HM.

Metab Eng. 2012 May;14(3):270-80. Review.

19.

Original research in the classroom: why do zebrafish spawn in the morning?

Liang JO, Abata K, Bachelder E, Bartley B, Bozadjieva N, Caskey V, Christianson B, Detienne S, Dillon C, Ecklund D, Eckwright D, Erickson R, Fadness T, Fealey M, Fetter N, Flatten M, Fulton J, Galloway R, Gauer J, Hagler M, Hammer A, Hasbargen D, Heckmann B, Hildebrandt A, Hillesheim J, Hoffman M, Hovey J, Iverson S, Joyal M, Jubran R, Keller S, Kent D, Kiefer B, King J, Kuefler A, Larson A, Lewis N, Lu PN, Malone J, Mickolichek C, Mitchell S, Nelson P, Nemec M, Olsen S, Olson K, Pautz K, Pieper K, Remackel M, Rengo C, Sekenski J, Sievers T, Slavik B, Sloan J, Smrekar C, Stromquist E, Tandberg P, Taurinskas N, Thiele M, Timinski P, Tusa B, Tuthill A, Uher B, Ward A, Wilson L, Young N.

Zebrafish. 2011 Dec;8(4):191-202. doi: 10.1089/zeb.2011.0715.

PMID:
22181662
20.

LIPS islet autoantibody assays in high-throughput format for DASP 2010.

Marcus P, Yan X, Bartley B, Hagopian W.

Diabetes Metab Res Rev. 2011 Nov;27(8):891-4. doi: 10.1002/dmrr.1268.

PMID:
22069280
21.

Performance measurement in British Helicopter Emergency Medical Services and Australian Air Medical Services.

Simpson N, Bartley B, Corfield AR, Hearns S.

Emerg Med J. 2012 Mar;29(3):243-6. doi: 10.1136/emj.2010.094789. Epub 2011 Feb 3.

PMID:
21292792
22.

Introduction of a prehospital critical incident monitoring system--final results.

Stella J, Bartley B, Jennings P.

Prehosp Disaster Med. 2010 Nov-Dec;25(6):515-20.

PMID:
21181685
23.

Designing and engineering evolutionary robust genetic circuits.

Sleight SC, Bartley BA, Lieviant JA, Sauro HM.

J Biol Eng. 2010 Nov 1;4:12. doi: 10.1186/1754-1611-4-12.

24.

In-Fusion BioBrick assembly and re-engineering.

Sleight SC, Bartley BA, Lieviant JA, Sauro HM.

Nucleic Acids Res. 2010 May;38(8):2624-36. doi: 10.1093/nar/gkq179. Epub 2010 Apr 12.

25.

DNA interstrand cross-linking activity of (1-Chloroethenyl)oxirane, a metabolite of beta-chloroprene.

Wadugu BA, Ng C, Bartley BL, Rowe RJ, Millard JT.

Chem Res Toxicol. 2010 Jan;23(1):235-9. doi: 10.1021/tx9003769.

26.

Emergency department surge capacity: recommendations of the Australasian Surge Strategy Working Group.

Bradt DA, Aitken P, FitzGerald G, Swift R, O'Reilly G, Bartley B.

Acad Emerg Med. 2009 Dec;16(12):1350-1358. doi: 10.1111/j.1553-2712.2009.00501.x. Epub 2009 Nov 12.

27.

Phosphate feeding induces arterial medial calcification in uremic mice: role of serum phosphorus, fibroblast growth factor-23, and osteopontin.

El-Abbadi MM, Pai AS, Leaf EM, Yang HY, Bartley BA, Quan KK, Ingalls CM, Liao HW, Giachelli CM.

Kidney Int. 2009 Jun;75(12):1297-1307. doi: 10.1038/ki.2009.83. Epub 2009 Mar 25.

28.

Introduction of a prehospital critical incident monitoring system--pilot project results.

Stella J, Davis A, Jennings P, Bartley B.

Prehosp Disaster Med. 2008 Mar-Apr;23(2):154-60.

PMID:
18557295
29.

Video of a disaster drill is effective in educating registrars on the hospital disaster plan.

Bartley B, Fisher J, Stella J.

Emerg Med Australas. 2007 Feb;19(1):39-44.

PMID:
17305659
30.

What a disaster?! Assessing utility of simulated disaster exercise and educational process for improving hospital preparedness.

Bartley BH, Stella JB, Walsh LD.

Prehosp Disaster Med. 2006 Jul-Aug;21(4):249-55.

PMID:
17076425
31.

Microglia cyclooxygenase-2 activity in experimental gliomas: possible role in cerebral edema formation.

Badie B, Schartner JM, Hagar AR, Prabakaran S, Peebles TR, Bartley B, Lapsiwala S, Resnick DK, Vorpahl J.

Clin Cancer Res. 2003 Feb;9(2):872-7.

32.

Differential expression of MHC class II and B7 costimulatory molecules by microglia in rodent gliomas.

Badie B, Bartley B, Schartner J.

J Neuroimmunol. 2002 Dec;133(1-2):39-45.

PMID:
12446006
33.

Dexamethasone-induced abolition of the inflammatory response in an experimental glioma model: a flow cytometry study.

Badie B, Schartner JM, Paul J, Bartley BA, Vorpahl J, Preston JK.

J Neurosurg. 2000 Oct;93(4):634-9.

PMID:
11014542
34.

The emergency medical services system response to a commercial airliner incident at the very remote location of Shemya, Alaska.

Anderson PB, Johnson MS, Bartley B.

Prehosp Disaster Med. 1997 Jan-Mar;12(1):36-40.

PMID:
10166373
35.

Expecting the unexpected.

Bartley B.

JEMS. 1993 Jul;18(7):41-4. No abstract available.

PMID:
10127347
36.

Compact design adds traffic control to step-saving features.

BARTLEY BS.

Hospitals. 1959 Nov 1;33:51-4. No abstract available.

PMID:
13797259

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