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Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling.

Hada A, Hota SK, Luo J, Lin YC, Kale S, Shaytan AK, Bhardwaj SK, Persinger J, Ranish J, Panchenko AR, Bartholomew B.

Cell Rep. 2019 Jul 2;28(1):282-294.e6. doi: 10.1016/j.celrep.2019.05.106.


Comparison of three different surgical techniques for designing pharyngeal flaps according to findings of videonasopharyngoscopy and multiplanar videofluoroscopy.

Ysunza PA, Chaiyasate K, Rontal M, Shaheen K, Bartholomew B.

Int J Pediatr Otorhinolaryngol. 2019 May;120:123-129. doi: 10.1016/j.ijporl.2019.02.022. Epub 2019 Feb 11.


Regulation of ATP-dependent chromatin remodelers: accelerators/brakes, anchors and sensors.

Paul S, Bartholomew B.

Biochem Soc Trans. 2018 Dec 17;46(6):1423-1430. doi: 10.1042/BST20180043. Epub 2018 Nov 22. Review.


An Abies procera-derived tetracyclic triterpene containing a steroid-like nucleus core and a lactone side chain attenuates in vitro survival of both Fasciola hepatica and Schistosoma mansoni.

Whiteland HL, Chakroborty A, Forde-Thomas JE, Crusco A, Cookson A, Hollinshead J, Fenn CA, Bartholomew B, Holdsworth PA, Fisher M, Nash RJ, Hoffmann KF.

Int J Parasitol Drugs Drug Resist. 2018 Dec;8(3):465-474. doi: 10.1016/j.ijpddr.2018.10.009. Epub 2018 Oct 26.


The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling.

Brahma S, Ngubo M, Paul S, Udugama M, Bartholomew B.

Nat Commun. 2018 Aug 17;9(1):3309. doi: 10.1038/s41467-018-05710-7.


Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II.

Meng H, Bartholomew B.

J Biol Chem. 2018 Sep 7;293(36):13786-13794. doi: 10.1074/jbc.R117.813485. Epub 2017 Nov 29. Review.


Proteasomes beyond proteolysis: Roles in heterochromatin maintenance.

Bartholomew B.

J Biol Chem. 2017 Oct 13;292(41):17156-17157. doi: 10.1074/jbc.H117.790824.


INO80 exchanges H2A.Z for H2A by translocating on DNA proximal to histone dimers.

Brahma S, Udugama MI, Kim J, Hada A, Bhardwaj SK, Hailu SG, Lee TH, Bartholomew B.

Nat Commun. 2017 Jun 12;8:15616. doi: 10.1038/ncomms15616.


Loss of Snf5 Induces Formation of an Aberrant SWI/SNF Complex.

Sen P, Luo J, Hada A, Hailu SG, Dechassa ML, Persinger J, Brahma S, Paul S, Ranish J, Bartholomew B.

Cell Rep. 2017 Feb 28;18(9):2135-2147. doi: 10.1016/j.celrep.2017.02.017.


Coordinated Action of Nap1 and RSC in Disassembly of Tandem Nucleosomes.

Prasad R, D'Arcy S, Hada A, Luger K, Bartholomew B.

Mol Cell Biol. 2016 Aug 12;36(17):2262-71. doi: 10.1128/MCB.00195-16. Print 2016 Sep 1.


Stepwise nucleosome translocation by RSC remodeling complexes.

Harada BT, Hwang WL, Deindl S, Chatterjee N, Bartholomew B, Zhuang X.

Elife. 2016 Feb 19;5. pii: e10051. doi: 10.7554/eLife.10051.


INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation.

Lafon A, Taranum S, Pietrocola F, Dingli F, Loew D, Brahma S, Bartholomew B, Papamichos-Chronakis M.

Mol Cell. 2015 Dec 3;60(5):784-796. doi: 10.1016/j.molcel.2015.10.028. Epub 2015 Nov 19.


Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.

Chatterjee N, North JA, Dechassa ML, Manohar M, Prasad R, Luger K, Ottesen JJ, Poirier MG, Bartholomew B.

Mol Cell Biol. 2015 Dec;35(23):4083-92. doi: 10.1128/MCB.00441-15. Epub 2015 Sep 28.


Dynamic regulation of transcription factors by nucleosome remodeling.

Li M, Hada A, Sen P, Olufemi L, Hall MA, Smith BY, Forth S, McKnight JN, Patel A, Bowman GD, Bartholomew B, Wang MD.

Elife. 2015 Jun 5;4. doi: 10.7554/eLife.06249.


Extranucleosomal DNA enhances the activity of the LSD1/CoREST histone demethylase complex.

Kim SA, Chatterjee N, Jennings MJ, Bartholomew B, Tan S.

Nucleic Acids Res. 2015 May 26;43(10):4868-80. doi: 10.1093/nar/gkv388. Epub 2015 Apr 27.


Regulation of Mec1 kinase activity by the SWI/SNF chromatin remodeling complex.

Kapoor P, Bao Y, Xiao J, Luo J, Shen J, Persinger J, Peng G, Ranish J, Bartholomew B, Shen X.

Genes Dev. 2015 Mar 15;29(6):591-602. doi: 10.1101/gad.257626.114.


The diterpenoid 7-keto-sempervirol, derived from Lycium chinense, displays anthelmintic activity against both Schistosoma mansoni and Fasciola hepatica.

Edwards J, Brown M, Peak E, Bartholomew B, Nash RJ, Hoffmann KF.

PLoS Negl Trop Dis. 2015 Mar 13;9(3):e0003604. doi: 10.1371/journal.pntd.0003604. eCollection 2015 Mar.


Random access gram stain automation: a review of current approaches.

Bartholomew B.

MLO Med Lab Obs. 2014 Jul;46(7):30-1. No abstract available.


The Mi-2 homolog Mit1 actively positions nucleosomes within heterochromatin to suppress transcription.

Creamer KM, Job G, Shanker S, Neale GA, Lin YC, Bartholomew B, Partridge JF.

Mol Cell Biol. 2014 Jun;34(11):2046-61. doi: 10.1128/MCB.01609-13. Epub 2014 Mar 24.


Regulating the chromatin landscape: structural and mechanistic perspectives.

Bartholomew B.

Annu Rev Biochem. 2014;83:671-96. doi: 10.1146/annurev-biochem-051810-093157. Epub 2014 Mar 5. Review.


ISWI chromatin remodeling: one primary actor or a coordinated effort?

Bartholomew B.

Curr Opin Struct Biol. 2014 Feb;24:150-5. doi: 10.1016/ Epub 2014 Feb 19. Review.


Iteamine, the first alkaloid isolated from Itea virginica L. inflorescence.

Ayers BJ, Hollinshead J, Saville AW, Nakagawa S, Adachi I, Kato A, Izumori K, Bartholomew B, Fleet GW, Nash RJ.

Phytochemistry. 2014 Apr;100:126-31. doi: 10.1016/j.phytochem.2014.01.012. Epub 2014 Feb 14.


Monomeric actin required for INO80 remodeling.

Bartholomew B.

Nat Struct Mol Biol. 2013 Apr;20(4):405-7. doi: 10.1038/nsmb.2553. No abstract available.


ISWI remodelers slide nucleosomes with coordinated multi-base-pair entry steps and single-base-pair exit steps.

Deindl S, Hwang WL, Hota SK, Blosser TR, Prasad P, Bartholomew B, Zhuang X.

Cell. 2013 Jan 31;152(3):442-52. doi: 10.1016/j.cell.2012.12.040.


Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains.

Hota SK, Bhardwaj SK, Deindl S, Lin YC, Zhuang X, Bartholomew B.

Nat Struct Mol Biol. 2013 Feb;20(2):222-9. doi: 10.1038/nsmb.2486. Epub 2013 Jan 20.


The SnAC domain of SWI/SNF is a histone anchor required for remodeling.

Sen P, Vivas P, Dechassa ML, Mooney AM, Poirier MG, Bartholomew B.

Mol Cell Biol. 2013 Jan;33(2):360-70. doi: 10.1128/MCB.00922-12. Epub 2012 Nov 12.


Stereoselective synthesis and biological evaluation of D-fagomine, D-3-epi-fagomine and D-3,4-epi-fagomine analogs from D-glyceraldehyde acetonide as a common building block.

Díez JA, Gálvez JA, Díaz-de-Villegas MD, Badorrey R, Bartholomew B, Nash RJ.

Org Biomol Chem. 2012 Dec 14;10(46):9278-86. doi: 10.1039/c2ob26732b. Epub 2012 Oct 29.


Disparity in the DNA translocase domains of SWI/SNF and ISW2.

Dechassa ML, Hota SK, Sen P, Chatterjee N, Prasad P, Bartholomew B.

Nucleic Acids Res. 2012 May;40(10):4412-21. doi: 10.1093/nar/gks007. Epub 2012 Jan 31.


Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit.

Darst RP, Pardo CE, Pondugula S, Gangaraju VK, Nabilsi NH, Bartholomew B, Kladde MP.

Methods Mol Biol. 2012;833:125-41. doi: 10.1007/978-1-61779-477-3_9.


Mapping protein-DNA and protein-protein interactions of ATP-dependent chromatin remodelers.

Hota SK, Dechassa ML, Prasad P, Bartholomew B.

Methods Mol Biol. 2012;809:381-409. doi: 10.1007/978-1-61779-376-9_26.


Approaches for studying nucleosome movement by ATP-dependent chromatin remodeling complexes.

Hota SK, Bartholomew B.

Methods Mol Biol. 2012;809:367-80. doi: 10.1007/978-1-61779-376-9_25.


A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling.

Sen P, Ghosh S, Pugh BF, Bartholomew B.

Nucleic Acids Res. 2011 Nov;39(21):9155-66. doi: 10.1093/nar/gkr622. Epub 2011 Aug 10.


Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms.

Chatterjee N, Sinha D, Lemma-Dechassa M, Tan S, Shogren-Knaak MA, Bartholomew B.

Nucleic Acids Res. 2011 Oct;39(19):8378-91. doi: 10.1093/nar/gkr535. Epub 2011 Jul 11.


Diversity of operation in ATP-dependent chromatin remodelers.

Hota SK, Bartholomew B.

Biochim Biophys Acta. 2011 Sep;1809(9):476-87. doi: 10.1016/j.bbagrm.2011.05.007. Epub 2011 May 15. Review.


Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling.

North JA, Javaid S, Ferdinand MB, Chatterjee N, Picking JW, Shoffner M, Nakkula RJ, Bartholomew B, Ottesen JJ, Fishel R, Poirier MG.

Nucleic Acids Res. 2011 Aug;39(15):6465-74. doi: 10.1093/nar/gkr304. Epub 2011 May 16.


A polar barrier to transcription can be circumvented by remodeler-induced nucleosome translocation.

Gaykalova DA, Nagarajavel V, Bondarenko VA, Bartholomew B, Clark DJ, Studitsky VM.

Nucleic Acids Res. 2011 May;39(9):3520-8. doi: 10.1093/nar/gkq1273. Epub 2011 Jan 17.


The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor.

Udugama M, Sabri A, Bartholomew B.

Mol Cell Biol. 2011 Feb;31(4):662-73. doi: 10.1128/MCB.01035-10. Epub 2010 Dec 6.


SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes.

Dechassa ML, Sabri A, Pondugula S, Kassabov SR, Chatterjee N, Kladde MP, Bartholomew B.

Mol Cell. 2010 May 28;38(4):590-602. doi: 10.1016/j.molcel.2010.02.040.


Synthesis and glycosidase inhibition of the enantiomer of (-)-steviamine, the first example of a new class of indolizidine alkaloid.

Hu XG, Bartholomew B, Nash RJ, Wilson FX, Fleet GW, Nakagawa S, Kato A, Jia YM, van Well R, Yu CY.

Org Lett. 2010 Jun 4;12(11):2562-5. doi: 10.1021/ol1007718.


Control of nucleosome movement: to space or not to space nucleosomes?

Prasad P, Bartholomew B.

Epigenetics. 2010 May 16;5(4):282-6. Epub 2010 May 24.


Conformational changes associated with template commitment in ATP-dependent chromatin remodeling by ISW2.

Gangaraju VK, Prasad P, Srour A, Kagalwala MN, Bartholomew B.

Mol Cell. 2009 Jul 10;35(1):58-69. doi: 10.1016/j.molcel.2009.05.013.


FACT and the proteasome promote promoter chromatin disassembly and transcriptional initiation.

Ransom M, Williams SK, Dechassa ML, Das C, Linger J, Adkins M, Liu C, Bartholomew B, Tyler JK.

J Biol Chem. 2009 Aug 28;284(35):23461-71. doi: 10.1074/jbc.M109.019562. Epub 2009 Jul 1.


Site-directed DNA crosslinking of large multisubunit protein-DNA complexes.

Persinger J, Bartholomew B.

Methods Mol Biol. 2009;543:453-74. doi: 10.1007/978-1-60327-015-1_27.


Architecture of the SWI/SNF-nucleosome complex.

Dechassa ML, Zhang B, Horowitz-Scherer R, Persinger J, Woodcock CL, Peterson CL, Bartholomew B.

Mol Cell Biol. 2008 Oct;28(19):6010-21. doi: 10.1128/MCB.00693-08. Epub 2008 Jul 21.


Domain architecture of the catalytic subunit in the ISW2-nucleosome complex.

Dang W, Bartholomew B.

Mol Cell Biol. 2007 Dec;27(23):8306-17. Epub 2007 Oct 1.


The Dpb4 subunit of ISW2 is anchored to extranucleosomal DNA.

Dang W, Kagalwala MN, Bartholomew B.

J Biol Chem. 2007 Jul 6;282(27):19418-25. Epub 2007 May 9.


Validation of a predictive risk score for radiocontrast-induced nephropathy following percutaneous coronary intervention.

Skelding KA, Best PJ, Bartholomew BA, Lennon RJ, O'Neill WW, Rihal CS.

J Invasive Cardiol. 2007 May;19(5):229-33.


Mechanisms of ATP dependent chromatin remodeling.

Gangaraju VK, Bartholomew B.

Mutat Res. 2007 May 1;618(1-2):3-17. Epub 2007 Jan 21. Review.

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