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Items: 18

1.

The landscape of long noncoding RNAs in the human transcriptome.

Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, Hosono Y, Barrette TR, Prensner JR, Evans JR, Zhao S, Poliakov A, Cao X, Dhanasekaran SM, Wu YM, Robinson DR, Beer DG, Feng FY, Iyer HK, Chinnaiyan AM.

Nat Genet. 2015 Mar;47(3):199-208. doi: 10.1038/ng.3192. Epub 2015 Jan 19.

2.

Chimeric transcript discovery by paired-end transcriptome sequencing.

Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12353-8. doi: 10.1073/pnas.0904720106. Epub 2009 Jul 10.

3.

Molecular concepts analysis links tumors, pathways, mechanisms, and drugs.

Rhodes DR, Kalyana-Sundaram S, Tomlins SA, Mahavisno V, Kasper N, Varambally R, Barrette TR, Ghosh D, Varambally S, Chinnaiyan AM.

Neoplasia. 2007 May;9(5):443-54.

4.

Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.

Rhodes DR, Kalyana-Sundaram S, Mahavisno V, Varambally R, Yu J, Briggs BB, Barrette TR, Anstet MJ, Kincead-Beal C, Kulkarni P, Varambally S, Ghosh D, Chinnaiyan AM.

Neoplasia. 2007 Feb;9(2):166-80.

5.

Mining for regulatory programs in the cancer transcriptome.

Rhodes DR, Kalyana-Sundaram S, Mahavisno V, Barrette TR, Ghosh D, Chinnaiyan AM.

Nat Genet. 2005 Jun;37(6):579-83.

PMID:
15920519
6.

C5a-induced gene expression in human umbilical vein endothelial cells.

Albrecht EA, Chinnaiyan AM, Varambally S, Kumar-Sinha C, Barrette TR, Sarma JV, Ward PA.

Am J Pathol. 2004 Mar;164(3):849-59.

7.

The polycomb group protein EZH2 is involved in progression of prostate cancer.

Varambally S, Dhanasekaran SM, Zhou M, Barrette TR, Kumar-Sinha C, Sanda MG, Ghosh D, Pienta KJ, Sewalt RG, Otte AP, Rubin MA, Chinnaiyan AM.

Nature. 2002 Oct 10;419(6907):624-9.

8.

alpha-Methylacyl-CoA racemase: expression levels of this novel cancer biomarker depend on tumor differentiation.

Kuefer R, Varambally S, Zhou M, Lucas PC, Loeffler M, Wolter H, Mattfeldt T, Hautmann RE, Gschwend JE, Barrette TR, Dunn RL, Chinnaiyan AM, Rubin MA.

Am J Pathol. 2002 Sep;161(3):841-8.

9.

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM.

Cancer Res. 2002 Aug 1;62(15):4427-33.

10.

alpha-Methylacyl coenzyme A racemase as a tissue biomarker for prostate cancer.

Rubin MA, Zhou M, Dhanasekaran SM, Varambally S, Barrette TR, Sanda MG, Pienta KJ, Ghosh D, Chinnaiyan AM.

JAMA. 2002 Apr 3;287(13):1662-70.

PMID:
11926890
11.

Profiling of cancer cells using protein microarrays: discovery of novel radiation-regulated proteins.

Sreekumar A, Nyati MK, Varambally S, Barrette TR, Ghosh D, Lawrence TS, Chinnaiyan AM.

Cancer Res. 2001 Oct 15;61(20):7585-93.

12.

Molecular signatures of sepsis: multiorgan gene expression profiles of systemic inflammation.

Chinnaiyan AM, Huber-Lang M, Kumar-Sinha C, Barrette TR, Shankar-Sinha S, Sarma VJ, Padgaonkar VA, Ward PA.

Am J Pathol. 2001 Oct;159(4):1199-209.

13.

Delineation of prognostic biomarkers in prostate cancer.

Dhanasekaran SM, Barrette TR, Ghosh D, Shah R, Varambally S, Kurachi K, Pienta KJ, Rubin MA, Chinnaiyan AM.

Nature. 2001 Aug 23;412(6849):822-6.

14.

Ultrasonographic detection of testicular ischemia in a canine model using phospholipid coated microbubbles (MRX-115).

Metzger-Rose C, Krupinski EA, Wright WH, Baker MR, McCreery TP, Barrette TR, Unger EC.

J Ultrasound Med. 1997 May;16(5):317-24; quiz 325-6.

PMID:
9315169
15.

Effect of phospholipid-coated microbubbles (MRX-115) on the detection of testicular ischemia in dogs.

Metzger-Rose C, Wright WH, Baker MR, Krupinski EA, McCreery TP, Barrette TR, Unger EC.

Acad Radiol. 1996 Aug;3 Suppl 2:S315-6. No abstract available.

PMID:
8796590
16.

Microbubbles as novel pressure-sensitive MR contrast agents.

Alexander AL, McCreery TT, Barrette TR, Gmitro AF, Unger EC.

Magn Reson Med. 1996 Jun;35(6):801-6.

PMID:
8744005
17.

Magnetic resonance guidance of percutaneous ethanol injection in liver.

Alexander AL, Barrette TR, Unger EC.

Acad Radiol. 1996 Jan;3(1):18-25.

PMID:
8796635
18.

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