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Items: 1 to 50 of 128

1.

Insights into the Human Virome Using CRISPR Spacers from Microbiomes.

Hidalgo-Cantabrana C, Sanozky-Dawes R, Barrangou R.

Viruses. 2018 Sep 7;10(9). pii: E479. doi: 10.3390/v10090479. Review.

2.

Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex.

Crawley AB, Barrangou R.

Front Microbiol. 2018 Aug 13;9:1834. doi: 10.3389/fmicb.2018.01834. eCollection 2018.

3.

CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline.

Nethery MA, Barrangou R.

RNA Biol. 2018 Aug 21:1-8. doi: 10.1080/15476286.2018.1493332. [Epub ahead of print]

PMID:
30130453
4.

Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems.

Faure G, Shmakov SA, Makarova KS, Wolf YI, Crawley AB, Barrangou R, Koonin EV.

RNA Biol. 2018 Aug 14:1-14. doi: 10.1080/15476286.2018.1493331. [Epub ahead of print]

PMID:
30103650
5.

Characterizing the activity of abundant, diverse and active CRISPR-Cas systems in lactobacilli.

Crawley AB, Henriksen ED, Stout E, Brandt K, Barrangou R.

Sci Rep. 2018 Aug 1;8(1):11544. doi: 10.1038/s41598-018-29746-3.

6.

Deletion-based escape of CRISPR-Cas9 targeting in Lactobacillus gasseri.

Stout EA, Sanozky-Dawes R, Goh YJ, Crawley AB, Klaenhammer TR, Barrangou R.

Microbiology. 2018 Sep;164(9):1098-1111. doi: 10.1099/mic.0.000689. Epub 2018 Jul 19.

PMID:
30024364
7.

Using glycolysis enzyme sequences to inform Lactobacillus phylogeny.

Brandt K, Barrangou R.

Microb Genom. 2018 Jun 22. doi: 10.1099/mgen.0.000187. [Epub ahead of print]

8.

The Lactobacillus Bile Salt Hydrolase Repertoire Reveals Niche-Specific Adaptation.

O'Flaherty S, Briner Crawley A, Theriot CM, Barrangou R.

mSphere. 2018 May 30;3(3). pii: e00140-18. doi: 10.1128/mSphere.00140-18. Print 2018 Jun 27.

9.

Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber.

Daughtry KV, Johanningsmeier SD, Sanozky-Dawes R, Klaenhammer TR, Barrangou R.

Int J Food Microbiol. 2018 Sep 2;280:46-56. doi: 10.1016/j.ijfoodmicro.2018.04.044. Epub 2018 May 9.

PMID:
29778800
10.

Mining for novel bacterial defence systems.

Barrangou R, van der Oost J.

Nat Microbiol. 2018 May;3(5):535-536. doi: 10.1038/s41564-018-0149-z. No abstract available.

PMID:
29632365
11.

Pulling the genome in opposite directions to dissect gene networks.

Gersbach CA, Barrangou R.

Genome Biol. 2018 Mar 26;19(1):42. doi: 10.1186/s13059-018-1425-1.

12.

Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition.

Anderson EM, McClelland S, Maksimova E, Strezoska Ž, Basila M, Briner AE, Barrangou R, Smith AVB.

PLoS One. 2018 Feb 2;13(2):e0192181. doi: 10.1371/journal.pone.0192181. eCollection 2018.

13.

Immune loss as a driver of coexistence during host-phage coevolution.

Weissman JL, Holmes R, Barrangou R, Moineau S, Fagan WF, Levin B, Johnson PLF.

ISME J. 2018 Feb;12(2):585-597. doi: 10.1038/ismej.2017.194. Epub 2018 Jan 12.

14.

Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics.

Klotz C, O'Flaherty S, Goh YJ, Barrangou R.

Front Microbiol. 2017 Nov 8;8:2174. doi: 10.3389/fmicb.2017.02174. eCollection 2017.

15.

Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals.

Theilmann MC, Goh YJ, Nielsen KF, Klaenhammer TR, Barrangou R, Abou Hachem M.

MBio. 2017 Nov 21;8(6). pii: e01421-17. doi: 10.1128/mBio.01421-17.

16.

Guest editorial: CRISPRcas9: CRISPR-Cas systems: at the cutting edge of microbiology.

Barrangou R, Bikard D.

Curr Opin Microbiol. 2017 Jun;37:vii-viii. doi: 10.1016/j.mib.2017.09.015. No abstract available.

PMID:
29096913
17.

Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum.

Hidalgo-Cantabrana C, Crawley AB, Sanchez B, Barrangou R.

Front Microbiol. 2017 Sep 26;8:1851. doi: 10.3389/fmicb.2017.01851. eCollection 2017.

18.

Genome Editing of Food-Grade Lactobacilli To Develop Therapeutic Probiotics.

van Pijkeren JP, Barrangou R.

Microbiol Spectr. 2017 Sep;5(5). doi: 10.1128/microbiolspec.BAD-0013-2016. Review.

19.

Using CRISPR-Cas systems as antimicrobials.

Bikard D, Barrangou R.

Curr Opin Microbiol. 2017 Jun;37:155-160. doi: 10.1016/j.mib.2017.08.005. Epub 2017 Sep 6. Review.

PMID:
28888103
20.

On the global CRISPR array behavior in class I systems.

Toms A, Barrangou R.

Biol Direct. 2017 Aug 29;12(1):20. doi: 10.1186/s13062-017-0193-2.

21.

Advances in Industrial Biotechnology Using CRISPR-Cas Systems.

Donohoue PD, Barrangou R, May AP.

Trends Biotechnol. 2018 Feb;36(2):134-146. doi: 10.1016/j.tibtech.2017.07.007. Epub 2017 Aug 1. Review.

PMID:
28778606
22.

The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM.

Johnson BR, O'Flaherty S, Goh YJ, Carroll I, Barrangou R, Klaenhammer TR.

Front Microbiol. 2017 Jun 30;8:1185. doi: 10.3389/fmicb.2017.01185. eCollection 2017.

23.

CRISPR-based engineering of next-generation lactic acid bacteria.

Hidalgo-Cantabrana C, O'Flaherty S, Barrangou R.

Curr Opin Microbiol. 2017 Jun;37:79-87. doi: 10.1016/j.mib.2017.05.015. Epub 2017 Jun 13. Review.

PMID:
28622636
24.

A decade of discovery: CRISPR functions and applications.

Barrangou R, Horvath P.

Nat Microbiol. 2017 Jun 5;2:17092. doi: 10.1038/nmicrobiol.2017.92. Review.

PMID:
28581505
25.

Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus.

Selle K, Goh YJ, Johnson BR, O'Flaherty S, Andersen JM, Barrangou R, Klaenhammer TR.

Front Microbiol. 2017 Apr 11;8:553. doi: 10.3389/fmicb.2017.00553. eCollection 2017.

26.

CRISPR-Cas Technologies and Applications in Food Bacteria.

Stout E, Klaenhammer T, Barrangou R.

Annu Rev Food Sci Technol. 2017 Feb 28;8:413-437. doi: 10.1146/annurev-food-072816-024723.

PMID:
28245154
27.

Expanding the CRISPR Toolbox: Targeting RNA with Cas13b.

Barrangou R, Gersbach CA.

Mol Cell. 2017 Feb 16;65(4):582-584. doi: 10.1016/j.molcel.2017.02.002.

28.

[CRISPR-Cas systems as weapons against pathogenic bacteria].

Bikard D, Barrangou R.

Biol Aujourdhui. 2017;211(4):265-270. doi: 10.1051/jbio/2018004. Epub 2018 Jun 29. French.

PMID:
29956653
29.

Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases.

Morovic W, Hibberd AA, Zabel B, Barrangou R, Stahl B.

Front Microbiol. 2016 Nov 3;7:1747. eCollection 2016.

30.

Applications of CRISPR technologies in research and beyond.

Barrangou R, Doudna JA.

Nat Biotechnol. 2016 Sep 8;34(9):933-941. doi: 10.1038/nbt.3659. [Epub ahead of print]

31.

CRISPR Diversity and Microevolution in Clostridium difficile.

Andersen JM, Shoup M, Robinson C, Britton R, Olsen KE, Barrangou R.

Genome Biol Evol. 2016 Sep 19;8(9):2841-55. doi: 10.1093/gbe/evw203.

32.

Guide RNAs: A Glimpse at the Sequences that Drive CRISPR-Cas Systems.

Briner AE, Barrangou R.

Cold Spring Harb Protoc. 2016 Jul 1;2016(7). doi: 10.1101/pdb.top090902.

PMID:
27371605
33.

Prediction and Validation of Native and Engineered Cas9 Guide Sequences.

Briner AE, Henriksen ED, Barrangou R.

Cold Spring Harb Protoc. 2016 Jul 1;2016(7). doi: 10.1101/pdb.prot086785.

PMID:
27371591
34.

Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.

Brandt K, Barrangou R.

Front Microbiol. 2016 May 9;7:657. doi: 10.3389/fmicb.2016.00657. eCollection 2016.

35.

Deciphering and shaping bacterial diversity through CRISPR.

Briner AE, Barrangou R.

Curr Opin Microbiol. 2016 Jun;31:101-108. doi: 10.1016/j.mib.2016.03.006. Epub 2016 Apr 2. Review.

PMID:
27045713
36.

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems.

Leenay RT, Maksimchuk KR, Slotkowski RA, Agrawal RN, Gomaa AA, Briner AE, Barrangou R, Beisel CL.

Mol Cell. 2016 Apr 7;62(1):137-47. doi: 10.1016/j.molcel.2016.02.031. Epub 2016 Mar 31.

37.

Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM.

Hymes JP, Johnson BR, Barrangou R, Klaenhammer TR.

Appl Environ Microbiol. 2016 Apr 18;82(9):2676-2685. doi: 10.1128/AEM.00024-16. Print 2016 May.

38.

CRISPR-Based Typing and Next-Generation Tracking Technologies.

Barrangou R, Dudley EG.

Annu Rev Food Sci Technol. 2016;7:395-411. doi: 10.1146/annurev-food-022814-015729. Epub 2016 Jan 11. Review.

PMID:
26772411
39.

Exploiting CRISPR-Cas immune systems for genome editing in bacteria.

Barrangou R, van Pijkeren JP.

Curr Opin Biotechnol. 2016 Feb;37:61-68. doi: 10.1016/j.copbio.2015.10.003. Epub 2015 Nov 26. Review.

PMID:
26629846
40.

Diversity of CRISPR-Cas immune systems and molecular machines.

Barrangou R.

Genome Biol. 2015 Nov 9;16:247. doi: 10.1186/s13059-015-0816-9. Review.

41.

Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli.

Johnson BR, Hymes J, Sanozky-Dawes R, Henriksen ED, Barrangou R, Klaenhammer TR.

Appl Environ Microbiol. 2015 Oct 16;82(1):134-45. doi: 10.1128/AEM.01968-15. Print 2016 Jan 1.

42.

CRISPR-Based Technologies and the Future of Food Science.

Selle K, Barrangou R.

J Food Sci. 2015 Nov;80(11):R2367-72. doi: 10.1111/1750-3841.13094. Epub 2015 Oct 7. Review.

PMID:
26444151
43.

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Sun Z, Harris HM, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW.

Nat Commun. 2015 Sep 29;6:8322. doi: 10.1038/ncomms9322.

44.

An updated evolutionary classification of CRISPR-Cas systems.

Makarova KS, Wolf YI, Alkhnbashi OS, Costa F, Shah SA, Saunders SJ, Barrangou R, Brouns SJ, Charpentier E, Haft DH, Horvath P, Moineau S, Mojica FJ, Terns RM, Terns MP, White MF, Yakunin AF, Garrett RA, van der Oost J, Backofen R, Koonin EV.

Nat Rev Microbiol. 2015 Nov;13(11):722-36. doi: 10.1038/nrmicro3569. Epub 2015 Sep 28. Review.

45.

Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Sun CL, Thomas BC, Barrangou R, Banfield JF.

ISME J. 2016 Apr;10(4):858-70. doi: 10.1038/ismej.2015.162. Epub 2015 Sep 22.

46.

Occurrence and activity of a type II CRISPR-Cas system in Lactobacillus gasseri.

Sanozky-Dawes R, Selle K, O'Flaherty S, Klaenhammer T, Barrangou R.

Microbiology. 2015 Sep;161(9):1752-61. doi: 10.1099/mic.0.000129. Epub 2015 Jul 9.

PMID:
26297561
47.

Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium.

Briner AE, Lugli GA, Milani C, Duranti S, Turroni F, Gueimonde M, Margolles A, van Sinderen D, Ventura M, Barrangou R.

PLoS One. 2015 Jul 31;10(7):e0133661. doi: 10.1371/journal.pone.0133661. eCollection 2015.

48.

CRISPR-based screening of genomic island excision events in bacteria.

Selle K, Klaenhammer TR, Barrangou R.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8076-81. doi: 10.1073/pnas.1508525112. Epub 2015 Jun 15.

49.

The Bacterial Origins of the CRISPR Genome-Editing Revolution.

Sontheimer EJ, Barrangou R.

Hum Gene Ther. 2015 Jul;26(7):413-24. doi: 10.1089/hum.2015.091. Review.

PMID:
26078042
50.

Procedures for Generating CRISPR Mutants with Novel Spacers Acquired from Viruses or Plasmids.

Dupuis MÈ, Barrangou R, Moineau S.

Methods Mol Biol. 2015;1311:195-222. doi: 10.1007/978-1-4939-2687-9_13.

PMID:
25981475

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