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Items: 1 to 50 of 120

1.

The Lactobacillus Bile Salt Hydrolase Repertoire Reveals Niche-Specific Adaptation.

O'Flaherty S, Briner Crawley A, Theriot CM, Barrangou R.

mSphere. 2018 May 30;3(3). pii: e00140-18. doi: 10.1128/mSphere.00140-18. Print 2018 Jun 27.

2.

Phenotypic and genotypic diversity of Lactobacillus buchneri strains isolated from spoiled, fermented cucumber.

Daughtry KV, Johanningsmeier SD, Sanozky-Dawes R, Klaenhammer TR, Barrangou R.

Int J Food Microbiol. 2018 Sep 2;280:46-56. doi: 10.1016/j.ijfoodmicro.2018.04.044. Epub 2018 May 9.

PMID:
29778800
3.

Mining for novel bacterial defence systems.

Barrangou R, van der Oost J.

Nat Microbiol. 2018 May;3(5):535-536. doi: 10.1038/s41564-018-0149-z. No abstract available.

PMID:
29632365
4.

Pulling the genome in opposite directions to dissect gene networks.

Gersbach CA, Barrangou R.

Genome Biol. 2018 Mar 26;19(1):42. doi: 10.1186/s13059-018-1425-1.

5.

Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition.

Anderson EM, McClelland S, Maksimova E, Strezoska Ž, Basila M, Briner AE, Barrangou R, Smith AVB.

PLoS One. 2018 Feb 2;13(2):e0192181. doi: 10.1371/journal.pone.0192181. eCollection 2018.

6.

Immune loss as a driver of coexistence during host-phage coevolution.

Weissman JL, Holmes R, Barrangou R, Moineau S, Fagan WF, Levin B, Johnson PLF.

ISME J. 2018 Feb;12(2):585-597. doi: 10.1038/ismej.2017.194. Epub 2018 Jan 12.

7.

Investigating the Effect of Growth Phase on the Surface-Layer Associated Proteome of Lactobacillus acidophilus Using Quantitative Proteomics.

Klotz C, O'Flaherty S, Goh YJ, Barrangou R.

Front Microbiol. 2017 Nov 8;8:2174. doi: 10.3389/fmicb.2017.02174. eCollection 2017.

8.

Lactobacillus acidophilus Metabolizes Dietary Plant Glucosides and Externalizes Their Bioactive Phytochemicals.

Theilmann MC, Goh YJ, Nielsen KF, Klaenhammer TR, Barrangou R, Abou Hachem M.

MBio. 2017 Nov 21;8(6). pii: e01421-17. doi: 10.1128/mBio.01421-17.

9.

Guest editorial: CRISPRcas9: CRISPR-Cas systems: at the cutting edge of microbiology.

Barrangou R, Bikard D.

Curr Opin Microbiol. 2017 Jun;37:vii-viii. doi: 10.1016/j.mib.2017.09.015. No abstract available.

PMID:
29096913
10.

Characterization and Exploitation of CRISPR Loci in Bifidobacterium longum.

Hidalgo-Cantabrana C, Crawley AB, Sanchez B, Barrangou R.

Front Microbiol. 2017 Sep 26;8:1851. doi: 10.3389/fmicb.2017.01851. eCollection 2017.

11.

Genome Editing of Food-Grade Lactobacilli To Develop Therapeutic Probiotics.

van Pijkeren JP, Barrangou R.

Microbiol Spectr. 2017 Sep;5(5). doi: 10.1128/microbiolspec.BAD-0013-2016. Review.

12.

Using CRISPR-Cas systems as antimicrobials.

Bikard D, Barrangou R.

Curr Opin Microbiol. 2017 Jun;37:155-160. doi: 10.1016/j.mib.2017.08.005. Epub 2017 Sep 6. Review.

PMID:
28888103
13.

On the global CRISPR array behavior in class I systems.

Toms A, Barrangou R.

Biol Direct. 2017 Aug 29;12(1):20. doi: 10.1186/s13062-017-0193-2.

14.

Advances in Industrial Biotechnology Using CRISPR-Cas Systems.

Donohoue PD, Barrangou R, May AP.

Trends Biotechnol. 2018 Feb;36(2):134-146. doi: 10.1016/j.tibtech.2017.07.007. Epub 2017 Aug 1. Review.

PMID:
28778606
15.

The S-layer Associated Serine Protease Homolog PrtX Impacts Cell Surface-Mediated Microbe-Host Interactions of Lactobacillus acidophilus NCFM.

Johnson BR, O'Flaherty S, Goh YJ, Carroll I, Barrangou R, Klaenhammer TR.

Front Microbiol. 2017 Jun 30;8:1185. doi: 10.3389/fmicb.2017.01185. eCollection 2017.

16.

CRISPR-based engineering of next-generation lactic acid bacteria.

Hidalgo-Cantabrana C, O'Flaherty S, Barrangou R.

Curr Opin Microbiol. 2017 Jun;37:79-87. doi: 10.1016/j.mib.2017.05.015. Epub 2017 Jun 13. Review.

PMID:
28622636
17.

A decade of discovery: CRISPR functions and applications.

Barrangou R, Horvath P.

Nat Microbiol. 2017 Jun 5;2:17092. doi: 10.1038/nmicrobiol.2017.92. Review.

PMID:
28581505
18.

Deletion of Lipoteichoic Acid Synthase Impacts Expression of Genes Encoding Cell Surface Proteins in Lactobacillus acidophilus.

Selle K, Goh YJ, Johnson BR, O'Flaherty S, Andersen JM, Barrangou R, Klaenhammer TR.

Front Microbiol. 2017 Apr 11;8:553. doi: 10.3389/fmicb.2017.00553. eCollection 2017.

19.

CRISPR-Cas Technologies and Applications in Food Bacteria.

Stout E, Klaenhammer T, Barrangou R.

Annu Rev Food Sci Technol. 2017 Feb 28;8:413-437. doi: 10.1146/annurev-food-072816-024723.

PMID:
28245154
20.

Expanding the CRISPR Toolbox: Targeting RNA with Cas13b.

Barrangou R, Gersbach CA.

Mol Cell. 2017 Feb 16;65(4):582-584. doi: 10.1016/j.molcel.2017.02.002.

21.

Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases.

Morovic W, Hibberd AA, Zabel B, Barrangou R, Stahl B.

Front Microbiol. 2016 Nov 3;7:1747. eCollection 2016.

22.

Applications of CRISPR technologies in research and beyond.

Barrangou R, Doudna JA.

Nat Biotechnol. 2016 Sep 8;34(9):933-941. doi: 10.1038/nbt.3659. [Epub ahead of print]

PMID:
27606440
23.

CRISPR Diversity and Microevolution in Clostridium difficile.

Andersen JM, Shoup M, Robinson C, Britton R, Olsen KE, Barrangou R.

Genome Biol Evol. 2016 Sep 19;8(9):2841-55. doi: 10.1093/gbe/evw203.

24.

Guide RNAs: A Glimpse at the Sequences that Drive CRISPR-Cas Systems.

Briner AE, Barrangou R.

Cold Spring Harb Protoc. 2016 Jul 1;2016(7). doi: 10.1101/pdb.top090902.

PMID:
27371605
25.

Prediction and Validation of Native and Engineered Cas9 Guide Sequences.

Briner AE, Henriksen ED, Barrangou R.

Cold Spring Harb Protoc. 2016 Jul 1;2016(7). doi: 10.1101/pdb.prot086785.

PMID:
27371591
26.

Phylogenetic Analysis of the Bifidobacterium Genus Using Glycolysis Enzyme Sequences.

Brandt K, Barrangou R.

Front Microbiol. 2016 May 9;7:657. doi: 10.3389/fmicb.2016.00657. eCollection 2016.

27.

Deciphering and shaping bacterial diversity through CRISPR.

Briner AE, Barrangou R.

Curr Opin Microbiol. 2016 Jun;31:101-108. doi: 10.1016/j.mib.2016.03.006. Epub 2016 Apr 2. Review.

PMID:
27045713
28.

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems.

Leenay RT, Maksimchuk KR, Slotkowski RA, Agrawal RN, Gomaa AA, Briner AE, Barrangou R, Beisel CL.

Mol Cell. 2016 Apr 7;62(1):137-47. doi: 10.1016/j.molcel.2016.02.031. Epub 2016 Mar 31.

29.

Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM.

Hymes JP, Johnson BR, Barrangou R, Klaenhammer TR.

Appl Environ Microbiol. 2016 Apr 18;82(9):2676-2685. doi: 10.1128/AEM.00024-16. Print 2016 May.

30.

CRISPR-Based Typing and Next-Generation Tracking Technologies.

Barrangou R, Dudley EG.

Annu Rev Food Sci Technol. 2016;7:395-411. doi: 10.1146/annurev-food-022814-015729. Epub 2016 Jan 11. Review.

PMID:
26772411
31.

Exploiting CRISPR-Cas immune systems for genome editing in bacteria.

Barrangou R, van Pijkeren JP.

Curr Opin Biotechnol. 2016 Feb;37:61-68. doi: 10.1016/j.copbio.2015.10.003. Epub 2015 Nov 26. Review.

PMID:
26629846
32.

Diversity of CRISPR-Cas immune systems and molecular machines.

Barrangou R.

Genome Biol. 2015 Nov 9;16:247. doi: 10.1186/s13059-015-0816-9. Review.

33.

Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli.

Johnson BR, Hymes J, Sanozky-Dawes R, Henriksen ED, Barrangou R, Klaenhammer TR.

Appl Environ Microbiol. 2015 Oct 16;82(1):134-45. doi: 10.1128/AEM.01968-15. Print 2016 Jan 1.

34.

CRISPR-Based Technologies and the Future of Food Science.

Selle K, Barrangou R.

J Food Sci. 2015 Nov;80(11):R2367-72. doi: 10.1111/1750-3841.13094. Epub 2015 Oct 7. Review.

PMID:
26444151
35.

Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

Sun Z, Harris HM, McCann A, Guo C, Argimón S, Zhang W, Yang X, Jeffery IB, Cooney JC, Kagawa TF, Liu W, Song Y, Salvetti E, Wrobel A, Rasinkangas P, Parkhill J, Rea MC, O'Sullivan O, Ritari J, Douillard FP, Paul Ross R, Yang R, Briner AE, Felis GE, de Vos WM, Barrangou R, Klaenhammer TR, Caufield PW, Cui Y, Zhang H, O'Toole PW.

Nat Commun. 2015 Sep 29;6:8322. doi: 10.1038/ncomms9322.

36.

An updated evolutionary classification of CRISPR-Cas systems.

Makarova KS, Wolf YI, Alkhnbashi OS, Costa F, Shah SA, Saunders SJ, Barrangou R, Brouns SJ, Charpentier E, Haft DH, Horvath P, Moineau S, Mojica FJ, Terns RM, Terns MP, White MF, Yakunin AF, Garrett RA, van der Oost J, Backofen R, Koonin EV.

Nat Rev Microbiol. 2015 Nov;13(11):722-36. doi: 10.1038/nrmicro3569. Epub 2015 Sep 28. Review.

37.

Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.

Sun CL, Thomas BC, Barrangou R, Banfield JF.

ISME J. 2016 Apr;10(4):858-70. doi: 10.1038/ismej.2015.162. Epub 2015 Sep 22.

38.

Occurrence and activity of a type II CRISPR-Cas system in Lactobacillus gasseri.

Sanozky-Dawes R, Selle K, O'Flaherty S, Klaenhammer T, Barrangou R.

Microbiology. 2015 Sep;161(9):1752-61. doi: 10.1099/mic.0.000129. Epub 2015 Jul 9.

PMID:
26297561
39.

Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium.

Briner AE, Lugli GA, Milani C, Duranti S, Turroni F, Gueimonde M, Margolles A, van Sinderen D, Ventura M, Barrangou R.

PLoS One. 2015 Jul 31;10(7):e0133661. doi: 10.1371/journal.pone.0133661. eCollection 2015.

40.

CRISPR-based screening of genomic island excision events in bacteria.

Selle K, Klaenhammer TR, Barrangou R.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8076-81. doi: 10.1073/pnas.1508525112. Epub 2015 Jun 15.

41.

The Bacterial Origins of the CRISPR Genome-Editing Revolution.

Sontheimer EJ, Barrangou R.

Hum Gene Ther. 2015 Jul;26(7):413-24. doi: 10.1089/hum.2015.091. Review.

PMID:
26078042
42.

Procedures for Generating CRISPR Mutants with Novel Spacers Acquired from Viruses or Plasmids.

Dupuis MÈ, Barrangou R, Moineau S.

Methods Mol Biol. 2015;1311:195-222. doi: 10.1007/978-1-4939-2687-9_13.

PMID:
25981475
43.

CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus.

Paez-Espino D, Sharon I, Morovic W, Stahl B, Thomas BC, Barrangou R, Banfield JF.

MBio. 2015 Apr 21;6(2). pii: e00262-15. doi: 10.1128/mBio.00262-15.

44.

Microbial ecology of watery kimchi.

Kyung KH, Medina Pradas E, Kim SG, Lee YJ, Kim KH, Choi JJ, Cho JH, Chung CH, Barrangou R, Breidt F.

J Food Sci. 2015 May;80(5):M1031-8. doi: 10.1111/1750-3841.12848. Epub 2015 Apr 6.

PMID:
25847522
45.

Advances in CRISPR-Cas9 genome engineering: lessons learned from RNA interference.

Barrangou R, Birmingham A, Wiemann S, Beijersbergen RL, Hornung V, Smith Av.

Nucleic Acids Res. 2015 Apr 20;43(7):3407-19. doi: 10.1093/nar/gkv226. Epub 2015 Mar 23. Review.

46.

Harnessing CRISPR-Cas systems for bacterial genome editing.

Selle K, Barrangou R.

Trends Microbiol. 2015 Apr;23(4):225-32. doi: 10.1016/j.tim.2015.01.008. Epub 2015 Feb 17. Review.

PMID:
25698413
47.

Characterization and evolution of Salmonella CRISPR-Cas systems.

Shariat N, Timme RE, Pettengill JB, Barrangou R, Dudley EG.

Microbiology. 2015 Feb;161(2):374-386. doi: 10.1099/mic.0.000005.

PMID:
28206902
48.

The roles of CRISPR-Cas systems in adaptive immunity and beyond.

Barrangou R.

Curr Opin Immunol. 2015 Feb;32:36-41. doi: 10.1016/j.coi.2014.12.008. Epub 2015 Jan 6. Review.

PMID:
25574773
49.

Unraveling the potential of CRISPR-Cas9 for gene therapy.

Barrangou R, May AP.

Expert Opin Biol Ther. 2015 Mar;15(3):311-4. doi: 10.1517/14712598.2015.994501. Epub 2014 Dec 23.

PMID:
25535790
50.

Bacteriophage exclusion, a new defense system.

Barrangou R, van der Oost J.

EMBO J. 2015 Jan 13;34(2):134-5. doi: 10.15252/embj.201490620. Epub 2014 Dec 12.

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