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Items: 49

1.

Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis.

Rutowicz K, Lirski M, Mermaz B, Teano G, Schubert J, Mestiri I, Kroteń MA, Fabrice TN, Fritz S, Grob S, Ringli C, Cherkezyan L, Barneche F, Jerzmanowski A, Baroux C.

Genome Biol. 2019 Aug 7;20(1):157. doi: 10.1186/s13059-019-1767-3.

2.

Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions.

Dumur T, Duncan S, Graumann K, Desset S, Randall RS, Scheid OM, Prodanov D, Tatout C, Baroux C.

Nucleus. 2019 Dec;10(1):181-212. doi: 10.1080/19491034.2019.1644592. Erratum in: Nucleus. 2019 Sep 18;:1.

3.

The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development.

Díaz M, Pečinková P, Nowicka A, Baroux C, Sakamoto T, Gandha PY, Jeřábková H, Matsunaga S, Grossniklaus U, Pecinka A.

Plant Cell. 2019 Jul;31(7):1579-1597. doi: 10.1105/tpc.18.00043. Epub 2019 Apr 29.

4.

Seeds-An evolutionary innovation underlying reproductive success in flowering plants.

Baroux C, Grossniklaus U.

Curr Top Dev Biol. 2019;131:605-642. doi: 10.1016/bs.ctdb.2018.11.017. Epub 2018 Dec 23. Review.

PMID:
30612632
5.

Aberrant imprinting may underlie evolution of parthenogenesis.

Kirioukhova O, Shah JN, Larsen DS, Tayyab M, Mueller NE, Govind G, Baroux C, Federer M, Gheyselinck J, Barrell PJ, Ma H, Sprunck S, Huettel B, Wallace H, Grossniklaus U, Johnston AJ.

Sci Rep. 2018 Jul 13;8(1):10626. doi: 10.1038/s41598-018-27863-7.

6.

Meeting report - INDEPTH kick-off meeting.

Parry G, Probst AV, Baroux C, Tatout C.

J Cell Sci. 2018 Jun 25;131(12). pii: jcs220558. doi: 10.1242/jcs.220558. Review.

7.

Transmission Electron Microscopy Imaging to Analyze Chromatin Density Distribution at the Nanoscale Level.

Fabrice TN, Cherkezyan L, Ringli C, Baroux C.

Methods Mol Biol. 2018;1675:633-651. doi: 10.1007/978-1-4939-7318-7_34.

PMID:
29052215
8.

Automated 3D Gene Position Analysis Using a Customized Imaris Plugin: XTFISHInsideNucleus.

Ashenafi MS, Baroux C.

Methods Mol Biol. 2018;1675:591-613. doi: 10.1007/978-1-4939-7318-7_32.

PMID:
29052213
9.

Technical Review: Microscopy and Image Processing Tools to Analyze Plant Chromatin: Practical Considerations.

Baroux C, Schubert V.

Methods Mol Biol. 2018;1675:537-589. doi: 10.1007/978-1-4939-7318-7_31. Review.

PMID:
29052212
10.

Cell-Type Specific Chromatin Analysis in Whole-Mount Plant Tissues by Immunostaining.

She W, Baroux C, Grossniklaus U.

Methods Mol Biol. 2018;1675:443-454. doi: 10.1007/978-1-4939-7318-7_25.

PMID:
29052206
11.

PHO1 Exports Phosphate from the Chalazal Seed Coat to the Embryo in Developing Arabidopsis Seeds.

Vogiatzaki E, Baroux C, Jung JY, Poirier Y.

Curr Biol. 2017 Oct 9;27(19):2893-2900.e3. doi: 10.1016/j.cub.2017.08.026. Epub 2017 Sep 21.

12.

3D Imaging of Whole-Mount Ovules at Cellular Resolution to Study Female Germline Development in Rice.

Mendocilla-Sato E, She W, Baroux C.

Methods Mol Biol. 2017;1669:37-45. doi: 10.1007/978-1-4939-7286-9_3.

PMID:
28936647
13.

Unreeling the chromatin thread: a genomic perspective on organization around the periphery of the Arabidopsis nucleus.

Barneche F, Baroux C.

Genome Biol. 2017 May 23;18(1):97. doi: 10.1186/s13059-017-1239-6.

14.

Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.

Kotliński M, Knizewski L, Muszewska A, Rutowicz K, Lirski M, Schmidt A, Baroux C, Ginalski K, Jerzmanowski A.

Plant Physiol. 2017 May;174(1):27-34. doi: 10.1104/pp.16.00214. Epub 2017 Mar 15.

15.

Non-random chromosome arrangement in triploid endosperm nuclei.

Baroux C, Pecinka A, Fuchs J, Kreth G, Schubert I, Grossniklaus U.

Chromosoma. 2017 Feb;126(1):115-124. doi: 10.1007/s00412-016-0578-5. Epub 2016 Feb 19.

16.

Quantitative Genetics Identifies Cryptic Genetic Variation Involved in the Paternal Regulation of Seed Development.

Pires ND, Bemer M, Müller LM, Baroux C, Spillane C, Grossniklaus U.

PLoS Genet. 2016 Jan 26;12(1):e1005806. doi: 10.1371/journal.pgen.1005806. eCollection 2016 Jan.

17.

The Maternal-to-Zygotic Transition in Flowering Plants: Evidence, Mechanisms, and Plasticity.

Baroux C, Grossniklaus U.

Curr Top Dev Biol. 2015;113:351-71. doi: 10.1016/bs.ctdb.2015.06.005. Epub 2015 Aug 13. Review.

PMID:
26358878
18.

Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants.

Baroux C, Autran D.

Plant J. 2015 Jul;83(1):160-76. doi: 10.1111/tpj.12890. Review.

19.
20.

Meiotic chromosome movements in plants, a puppet show?

Varas J, Baroux C.

Front Plant Sci. 2014 Sep 29;5:502. doi: 10.3389/fpls.2014.00502. eCollection 2014. No abstract available.

21.

Chromatin dynamics during plant sexual reproduction.

She W, Baroux C.

Front Plant Sci. 2014 Jul 24;5:354. doi: 10.3389/fpls.2014.00354. eCollection 2014. Review.

22.
23.

Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2.

Raissig MT, Bemer M, Baroux C, Grossniklaus U.

PLoS Genet. 2013;9(12):e1003862. doi: 10.1371/journal.pgen.1003862. Epub 2013 Dec 5.

24.

Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants.

She W, Grimanelli D, Rutowicz K, Whitehead MW, Puzio M, Kotlinski M, Jerzmanowski A, Baroux C.

Development. 2013 Oct;140(19):4008-19. doi: 10.1242/dev.095034. Epub 2013 Sep 4.

25.

Efficient and rapid isolation of early-stage embryos from Arabidopsis thaliana seeds.

Raissig MT, Gagliardini V, Jaenisch J, Grossniklaus U, Baroux C.

J Vis Exp. 2013 Jun 7;(76). doi: 10.3791/50371.

26.

Parental contributions to the transcriptome of early plant embryos.

Baroux C, Autran D, Raissig MT, Grimanelli D, Grossniklaus U.

Curr Opin Genet Dev. 2013 Feb;23(1):72-4. doi: 10.1016/j.gde.2013.01.006. Epub 2013 Feb 28.

27.

The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect.

Ngo QA, Baroux C, Guthörl D, Mozerov P, Collinge MA, Sundaresan V, Grossniklaus U.

Plant Cell. 2012 Oct;24(10):4026-43. doi: 10.1105/tpc.112.102384. Epub 2012 Oct 12.

28.

Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development.

Schmidt A, Wuest SE, Vijverberg K, Baroux C, Kleen D, Grossniklaus U.

PLoS Biol. 2011 Sep;9(9):e1001155. doi: 10.1371/journal.pbio.1001155. Epub 2011 Sep 20.

29.

Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis.

Autran D, Baroux C, Raissig MT, Lenormand T, Wittig M, Grob S, Steimer A, Barann M, Klostermeier UC, Leblanc O, Vielle-Calzada JP, Rosenstiel P, Grimanelli D, Grossniklaus U.

Cell. 2011 May 27;145(5):707-19. doi: 10.1016/j.cell.2011.04.014.

30.

Epigenetic regulation and reprogramming during gamete formation in plants.

Baroux C, Raissig MT, Grossniklaus U.

Curr Opin Genet Dev. 2011 Apr;21(2):124-33. doi: 10.1016/j.gde.2011.01.017. Epub 2011 Feb 14. Review.

PMID:
21324672
31.

Regulation and flexibility of genomic imprinting during seed development.

Raissig MT, Baroux C, Grossniklaus U.

Plant Cell. 2011 Jan;23(1):16-26. doi: 10.1105/tpc.110.081018. Epub 2011 Jan 28. Review.

32.

Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis.

Pillot M, Baroux C, Vazquez MA, Autran D, Leblanc O, Vielle-Calzada JP, Grossniklaus U, Grimanelli D.

Plant Cell. 2010 Feb;22(2):307-20. doi: 10.1105/tpc.109.071647. Epub 2010 Feb 5.

33.

The maternal to zygotic transition in animals and plants.

Baroux C, Autran D, Gillmor CS, Grimanelli D, Grossniklaus U.

Cold Spring Harb Symp Quant Biol. 2008;73:89-100. doi: 10.1101/sqb.2008.73.053. Epub 2009 Feb 9. Review.

PMID:
19204068
34.

[Clinical factors favoring excessive subconjunctival fibroblastic proliferation after glaucoma surgery].

Bresson-Dumont H, Lehoux A, Baroux C, Foucher J, Santiago PY.

J Fr Ophtalmol. 2008 Jul;31(6 Pt 2):2S74-7. French.

PMID:
18957919
35.

Genomic origin and organization of the allopolyploid Primula egaliksensis investigated by in situ hybridization.

Guggisberg A, Baroux C, Grossniklaus U, Conti E.

Ann Bot. 2008 May;101(7):919-27. doi: 10.1093/aob/mcn026. Epub 2008 Feb 27.

36.

Chromatin modification and remodeling during early seed development.

Baroux C, Pien S, Grossniklaus U.

Curr Opin Genet Dev. 2007 Dec;17(6):473-9. Epub 2007 Oct 29. Review.

PMID:
18029170
37.

Positive darwinian selection at the imprinted MEDEA locus in plants.

Spillane C, Schmid KJ, Laoueillé-Duprat S, Pien S, Escobar-Restrepo JM, Baroux C, Gagliardini V, Page DR, Wolfe KH, Grossniklaus U.

Nature. 2007 Jul 19;448(7151):349-52. Erratum in: Nature. 2007 Nov 15;450(7168):450.

PMID:
17637669
38.

The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization.

Baroux C, Pecinka A, Fuchs J, Schubert I, Grossniklaus U.

Plant Cell. 2007 Jun;19(6):1782-94. Epub 2007 Jun 8.

39.

Predictable activation of tissue-specific expression from a single gene locus using the pOp/LhG4 transactivation system in Arabidopsis.

Baroux C, Blanvillain R, Betts H, Batoko H, Craft J, Martinez A, Gallois P, Moore I.

Plant Biotechnol J. 2005 Jan;3(1):91-101.

40.
41.

Cellular efflux of auxin catalyzed by the Arabidopsis MDR/PGP transporter AtPGP1.

Geisler M, Blakeslee JJ, Bouchard R, Lee OR, Vincenzetti V, Bandyopadhyay A, Titapiwatanakun B, Peer WA, Bailly A, Richards EL, Ejendal KF, Smith AP, Baroux C, Grossniklaus U, Müller A, Hrycyna CA, Dudler R, Murphy AS, Martinoia E.

Plant J. 2005 Oct;44(2):179-94.

42.

Transposons and tandem repeats are not involved in the control of genomic imprinting at the MEDEA locus in Arabidopsis.

Spillane C, Baroux C, Escobar-Restrepo JM, Page DR, Laoueille S, Grossniklaus U.

Cold Spring Harb Symp Quant Biol. 2004;69:465-75. No abstract available.

PMID:
16117682
43.

New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis.

Craft J, Samalova M, Baroux C, Townley H, Martinez A, Jepson I, Tsiantis M, Moore I.

Plant J. 2005 Mar;41(6):899-918.

44.

Nuclear fusions contribute to polyploidization of the gigantic nuclei in the chalazal endosperm of Arabidopsis.

Baroux C, Fransz P, Grossniklaus U.

Planta. 2004 Nov;220(1):38-46. Epub 2004 Jul 10.

PMID:
15248065
45.

Intrachromosomal excision of a hybrid Ds element induces large genomic deletions in Arabidopsis.

Page DR, Köhler C, Da Costa-Nunes JA, Baroux C, Moore JM, Grossniklaus U.

Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2969-74. Epub 2004 Feb 23.

46.

Evolutionary origins of the endosperm in flowering plants.

Baroux C, Spillane C, Grossniklaus U.

Genome Biol. 2002 Aug 30;3(9):reviews1026. Epub 2002 Aug 30. Review.

47.

Genomic imprinting during seed development.

Baroux C, Spillane C, Grossniklaus U.

Adv Genet. 2002;46:165-214. Review.

PMID:
11931224
49.

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