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PIPE4: Fast PPI Predictor for Comprehensive Inter- and Cross-Species Interactomes.

Dick K, Samanfar B, Barnes B, Cober ER, Mimee B, Tan LH, Molnar SJ, Biggar KK, Golshani A, Dehne F, Green JR.

Sci Rep. 2020 Jan 29;10(1):1390. doi: 10.1038/s41598-019-56895-w.


γ-Tocotrienol and α-Tocopherol Ether Acetate Enhance Docetaxel Activity in Drug-Resistant Prostate Cancer Cells.

Asay S, Graham A, Hollingsworth S, Barnes B, Oblad RV, Michaelis DJ, Kenealey JD.

Molecules. 2020 Jan 18;25(2). pii: E398. doi: 10.3390/molecules25020398.


Metformin alleviates muscle wasting post-thermal injury by increasing Pax7-positive muscle progenitor cells.

Yousuf Y, Datu A, Barnes B, Amini-Nik S, Jeschke MG.

Stem Cell Res Ther. 2020 Jan 8;11(1):18. doi: 10.1186/s13287-019-1480-x.


Effects of industrial disturbances on biodiversity of carrion-associated beetles.

Silva AE, Barnes BF, Coyle DR, Abernethy EF, Turner KL, Rhodes OE Jr, Beasley JC, Gandhi KJK.

Sci Total Environ. 2020 Mar 20;709:135158. doi: 10.1016/j.scitotenv.2019.135158. Epub 2019 Nov 13.


IRF5 genetic risk variants drive myeloid-specific IRF5 hyperactivation and presymptomatic SLE.

Li D, Matta B, Song S, Nelson V, Diggins K, Simpfendorfer KR, Gregersen PK, Linsley P, Barnes BJ.

JCI Insight. 2020 Jan 30;5(2). pii: 124020. doi: 10.1172/jci.insight.124020.


Data-driven approaches to optical patterned defect detection.

Henn MA, Zhou H, Barnes BM.

OSA Contin. 2019 Sep 15;2(9):2683-2693. doi: 10.1364/osac.2.002683. Epub 2019 Sep 5.


External reviews: making an eye service safer.

Barnes B, Chang B, Hingorani M.

Community Eye Health. 2019;32(106):28-30. No abstract available.


Radiologic Imaging in Trauma Patients with Cervical Spine Immobilization at a Pediatric Trauma Center.

Barnes BC, Kamat PP, McCracken CM, Santore MT, Mallory MD, Simon HK, Sulton CD.

J Emerg Med. 2019 Oct;57(4):429-436. doi: 10.1016/j.jemermed.2019.06.048. Epub 2019 Oct 4.


Extensive coral mortality and critical habitat loss following dredging and their association with remotely-sensed sediment plumes.

Cunning R, Silverstein RN, Barnes BB, Baker AC.

Mar Pollut Bull. 2019 Aug;145:185-199. doi: 10.1016/j.marpolbul.2019.05.027. Epub 2019 May 24.


HMGB1-C1q complexes regulate macrophage function by switching between leukotriene and specialized proresolving mediator biosynthesis.

Liu T, Xiang A, Peng T, Doran AC, Tracey KJ, Barnes BJ, Tabas I, Son M, Diamond B.

Proc Natl Acad Sci U S A. 2019 Nov 12;116(46):23254-23263. doi: 10.1073/pnas.1907490116. Epub 2019 Sep 30.


Tissue-specific telomere dynamics in hibernating arctic ground squirrels (Urocitellus parryii).

Wilbur SM, Barnes BM, Kitaysky AS, Williams CT.

J Exp Biol. 2019 Sep 23;222(Pt 18). pii: jeb204925. doi: 10.1242/jeb.204925.


Operative Versus Nonoperative Management of Appendicitis: A Long-Term Cost Effectiveness Analysis.

Sceats LA, Ku S, Coughran A, Barnes B, Grimm E, Muffly M, Spain DA, Kin C, Owens DK, Goldhaber-Fiebert JD.

MDM Policy Pract. 2019 Aug 17;4(2):2381468319866448. doi: 10.1177/2381468319866448. eCollection 2019 Jul-Dec.


RNAi Transfection Optimized in Primary Naïve B Cells for the Targeted Analysis of Human Plasma Cell Differentiation.

Shih T, De S, Barnes BJ.

Front Immunol. 2019 Jul 23;10:1652. doi: 10.3389/fimmu.2019.01652. eCollection 2019.


The great Atlantic Sargassum belt.

Wang M, Hu C, Barnes BB, Mitchum G, Lapointe B, Montoya JP.

Science. 2019 Jul 5;365(6448):83-87. doi: 10.1126/science.aaw7912.


Hierarchical Fractal Assemblies from Poly(ethylene oxide- b-lysine- b-leucine).

Machado CA, Bentz KC, Tran R, Jenkins TA, Barnes BE, Diodati LE, Savin DA.

Biomacromolecules. 2019 Jul 8;20(7):2557-2566. doi: 10.1021/acs.biomac.9b00337. Epub 2019 Jun 20.


Self-Sorting of 10-µm-Long Single-Walled Carbon Nanotubes in Aqueous Solution.

Wang P, Barnes B, Wu X, Qu H, Zhang C, Shi Y, Headrick RJ, Pasquali M, Wang Y.

Adv Mater. 2019 Aug;31(33):e1901641. doi: 10.1002/adma.201901641. Epub 2019 Jun 20.


Royal College of Ophthalmologists' National Ophthalmology Database study of cataract surgery: report 6. The impact of EyeSi virtual reality training on complications rates of cataract surgery performed by first and second year trainees.

Ferris JD, Donachie PH, Johnston RL, Barnes B, Olaitan M, Sparrow JM.

Br J Ophthalmol. 2020 Mar;104(3):324-329. doi: 10.1136/bjophthalmol-2018-313817. Epub 2019 May 29.


Coordination between innate immune cells, type I IFNs and IRF5 drives SLE pathogenesis.

Matta B, Barnes BJ.

Cytokine. 2019 May 23:154731. doi: 10.1016/j.cyto.2019.05.018. [Epub ahead of print]


Probabilistic modeling for an integrated temporary acquired immunity with norovirus epidemiological data.

Owusu-Ansah EDJ, Barnes B, Abaidoo R, Tine H, Dalsgaard A, Permin A, Schou TW.

Infect Dis Model. 2019 Apr 27;4:99-114. doi: 10.1016/j.idm.2019.04.005. eCollection 2019.


Modelling the impact of biosecurity practices on the risk of high pathogenic avian influenza outbreaks in Australian commercial chicken farms.

Glass K, Barnes B, Scott A, Toribio JA, Moloney B, Singh M, Hernandez-Jover M.

Prev Vet Med. 2019 Apr 1;165:8-14. doi: 10.1016/j.prevetmed.2019.02.002. Epub 2019 Feb 5.


Modelling high pathogenic avian influenza outbreaks in the commercial poultry industry.

Barnes B, Scott A, Hernandez-Jover M, Toribio JA, Moloney B, Glass K.

Theor Popul Biol. 2019 Apr;126:59-71. doi: 10.1016/j.tpb.2019.02.004. Epub 2019 Feb 27.


Correction: Assessing the probability of introduction and spread of avian influenza (AI) virus in commercial Australian poultry operations using an expert opinion elicitation.

Singh M, Toribio JA, Scott AB, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

PLoS One. 2019 Feb 21;14(2):e0212895. doi: 10.1371/journal.pone.0212895. eCollection 2019.


In Silico Engineering of Synthetic Binding Proteins from Random Amino Acid Sequences.

Burnside D, Schoenrock A, Moteshareie H, Hooshyar M, Basra P, Hajikarimlou M, Dick K, Barnes B, Kazmirchuk T, Jessulat M, Pitre S, Samanfar B, Babu M, Green JR, Wong A, Dehne F, Biggar KK, Golshani A.

iScience. 2019 Jan 25;11:375-387. doi: 10.1016/j.isci.2018.11.038. Epub 2018 Dec 4.


Genetic Versus Non-genetic Drivers of SLE: Implications of IRF5 Dysregulation in Both Roads Leading to SLE.

Barnes BJ.

Curr Rheumatol Rep. 2019 Jan 15;21(1):2. doi: 10.1007/s11926-019-0803-3. Review.


Chronic TLR7 and TLR9 signaling drives anemia via differentiation of specialized hemophagocytes.

Akilesh HM, Buechler MB, Duggan JM, Hahn WO, Matta B, Sun X, Gessay G, Whalen E, Mason M, Presnell SR, Elkon KB, Lacy-Hulbert A, Barnes BJ, Pepper M, Hamerman JA.

Science. 2019 Jan 11;363(6423). pii: eaao5213. doi: 10.1126/science.aao5213.


Therapeutic Targeting of IRFs: Pathway-Dependence or Structure-Based?

Thompson CD, Matta B, Barnes BJ.

Front Immunol. 2018 Nov 20;9:2622. doi: 10.3389/fimmu.2018.02622. eCollection 2018. Review.


Characteristics of Intracranial Group A Streptococcal Infections in US Children, 1997-2014.

Link-Gelles R, Toews KA, Schaffner W, Edwards KM, Wright C, Beall B, Barnes B, Jewell B, Harrison LH, Kirley PD, Lorentzson L, Aragon D, Petit S, Bareta J, Spina NL, Cieslak PR, Van Beneden C.

J Pediatric Infect Dis Soc. 2020 Feb 28;9(1):30-35. doi: 10.1093/jpids/piy108.


Insulin-like growth factor receptor signaling in breast tumor epithelium protects cells from endoplasmic reticulum stress and regulates the tumor microenvironment.

Obr AE, Kumar S, Chang YJ, Bulatowicz JJ, Barnes BJ, Birge RB, Lazzarino DA, Gallagher E, LeRoith D, Wood TL.

Breast Cancer Res. 2018 Nov 20;20(1):138. doi: 10.1186/s13058-018-1063-2.


[Cancer screening in Germany: availability and participation].

Starker A, Buttmann-Schweiger N, Krause L, Barnes B, Kraywinkel K, Holmberg C.

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz. 2018 Dec;61(12):1491-1499. doi: 10.1007/s00103-018-2842-8. Review. German.


Cancers Potentially Preventable through Excess Weight Reduction in Germany in 2010.

Wienecke A, Neuhauser H, Kraywinkel K, Barnes B.

Obes Facts. 2018;11(5):400-412. doi: 10.1159/000490150. Epub 2018 Oct 17.


Socioeconomic Inequalities in Total and Site-Specific Cancer Incidence in Germany: A Population-Based Registry Study.

Hoebel J, Kroll LE, Fiebig J, Lampert T, Katalinic A, Barnes B, Kraywinkel K.

Front Oncol. 2018 Sep 25;8:402. doi: 10.3389/fonc.2018.00402. eCollection 2018.


Opioid Death Rate Acceleration in Jurisdictions Legalizing Marijuana Use.

Bleyer A, Barnes B.

JAMA Intern Med. 2018 Sep 1;178(9):1280-1281. doi: 10.1001/jamainternmed.2018.3888. No abstract available.


Low Pathogenic Avian Influenza Exposure Risk Assessment in Australian Commercial Chicken Farms.

Scott AB, Toribio JA, Singh M, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

Front Vet Sci. 2018 Apr 26;5:68. doi: 10.3389/fvets.2018.00068. eCollection 2018.


Maternal Sirolimus Therapy for Fetal Cardiac Rhabdomyomas.

Barnes BT, Procaccini D, Crino J, Blakemore K, Sekar P, Sagaser KG, Jelin AC, Gaur L.

N Engl J Med. 2018 May 10;378(19):1844-1845. doi: 10.1056/NEJMc1800352. No abstract available.


Low- and High-Pathogenic Avian Influenza H5 and H7 Spread Risk Assessment Within and Between Australian Commercial Chicken Farms.

Scott AB, Toribio JLML, Singh M, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

Front Vet Sci. 2018 Apr 9;5:63. doi: 10.3389/fvets.2018.00063. eCollection 2018.


Specific IgG4 antibodies to cow's milk proteins in pediatric patients with eosinophilic esophagitis.

Schuyler AJ, Wilson JM, Tripathi A, Commins SP, Ogbogu PU, Kruzsewski PG, Barnes BH, McGowan EC, Workman LJ, Lidholm J, Rifas-Shiman SL, Oken E, Gold DR, Platts-Mills TAE, Erwin EA.

J Allergy Clin Immunol. 2018 Jul;142(1):139-148.e12. doi: 10.1016/j.jaci.2018.02.049. Epub 2018 Apr 18.


Biosecurity practices on Australian commercial layer and meat chicken farms: Performance and perceptions of farmers.

Scott AB, Singh M, Groves P, Hernandez-Jover M, Barnes B, Glass K, Moloney B, Black A, Toribio JA.

PLoS One. 2018 Apr 18;13(4):e0195582. doi: 10.1371/journal.pone.0195582. eCollection 2018.


Targeted methylation sequencing of plasma cell-free DNA for cancer detection and classification.

Liu L, Toung JM, Jassowicz AF, Vijayaraghavan R, Kang H, Zhang R, Kruglyak KM, Huang HJ, Hinoue T, Shen H, Salathia NS, Hong DS, Naing A, Subbiah V, Piha-Paul SA, Bibikova M, Granger G, Barnes B, Shen R, Gutekunst K, Fu S, Tsimberidou AM, Lu C, Eng C, Moulder SL, Kopetz ES, Amaria RN, Meric-Bernstam F, Laird PW, Fan JB, Janku F.

Ann Oncol. 2018 Jun 1;29(6):1445-1453. doi: 10.1093/annonc/mdy119.


Modelling low pathogenic avian influenza introduction into the commercial poultry industry.

Barnes B, Glass K.

Math Biosci. 2018 Jun;300:115-121. doi: 10.1016/j.mbs.2018.03.021. Epub 2018 Mar 23.


Postoperative Outcomes After Radical Cystectomy in Patients With Prior Pelvic Radiation.

Fontenot PA Jr, Barnes BD, Parker WP, Wyre H, Lee EK, Holzbeierlein JM.

Urology. 2018 Jun;116:131-136. doi: 10.1016/j.urology.2018.01.001. Epub 2018 Mar 12.


Appointment-based models: A comparison of three model designs in a large chain community pharmacy setting.

Barnes B, Hincapie AL, Luder H, Kirby J, Frede S, Heaton PC.

J Am Pharm Assoc (2003). 2018 Mar - Apr;58(2):156-162.e1. doi: 10.1016/j.japh.2018.01.005.


Correction: Comparisons of management practices and farm design on Australian commercial layer and meat chicken farms: Cage, barn and free range.

Scott AB, Singh M, Toribio JA, Hernandez-Jover M, Barnes B, Glass K, Moloney B, Lee A, Groves P.

PLoS One. 2018 Mar 5;13(3):e0194086. doi: 10.1371/journal.pone.0194086. eCollection 2018.


Design of angle-resolved illumination optics using nonimaging bi-telecentricity for 193 nm scatterfield microscopy.

Sohn MY, Barnes BM, Silver RM.

Optik (Stuttg). 2018 Mar;156:635-645. doi: 10.1016/j.ijleo.2017.11.206. Epub 2017 Dec 2.


Assessing the probability of introduction and spread of avian influenza (AI) virus in commercial Australian poultry operations using an expert opinion elicitation.

Singh M, Toribio JA, Scott AB, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

PLoS One. 2018 Mar 1;13(3):e0193730. doi: 10.1371/journal.pone.0193730. eCollection 2018. Erratum in: PLoS One. 2019 Feb 21;14(2):e0212895.


Response to: 'Comment on: 'How to defuse a demographic time bomb: the way forward?'

Buchan JC, Amoaku W, Barnes B, Cassels-Brown A, Chang BY, Harcourt J, Shickle D, Spencer AF, Vernon SA, MacEwen C.

Eye (Lond). 2018 Jun;32(6):1154-1155. doi: 10.1038/s41433-017-0013-z. Epub 2018 Feb 9. No abstract available.


Resistance Switching and Memristive Hysteresis in Visible-Light-Activated Adsorbed ZnO Thin Films.

Barnes BK, Das KS.

Sci Rep. 2018 Feb 1;8(1):2184. doi: 10.1038/s41598-018-20598-5.


B Cell-Intrinsic Role for IRF5 in TLR9/BCR-Induced Human B Cell Activation, Proliferation, and Plasmablast Differentiation.

De S, Zhang B, Shih T, Singh S, Winkler A, Donnelly R, Barnes BJ.

Front Immunol. 2018 Jan 10;8:1938. doi: 10.3389/fimmu.2017.01938. eCollection 2017.


Corrected and Republished from: The COP9 Signalosome Interacts with and Regulates Interferon Regulatory Factor 5 Protein Stability.

Korczeniewska J, Barnes BJ.

Mol Cell Biol. 2018 Jan 16;38(3). pii: e00493-17. doi: 10.1128/MCB.00493-17. Print 2018 Feb 1.


A mixed linear model controlling for case underascertainment across multiple cancer registries estimated time trends in survival.

Dahm S, Bertz J, Barnes B, Kraywinkel K.

J Clin Epidemiol. 2018 May;97:111-121. doi: 10.1016/j.jclinepi.2018.01.002. Epub 2018 Jan 10.


Metrology for the next generation of semiconductor devices.

Orji NG, Badaroglu M, Barnes BM, Beitia C, Bunday BD, Celano U, Kline RJ, Neisser M, Obeng Y, Vladar AE.

Nat Electron. 2018;1. doi: 10.1038/s41928-018-0150-9.

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