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Items: 34

1.

Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.

Acuña-Amador L, Primot A, Cadieu E, Roulet A, Barloy-Hubler F.

BMC Genomics. 2018 Jan 16;19(1):54. doi: 10.1186/s12864-017-4429-4.

2.

Signature of Microbial Dysbiosis in Periodontitis.

Meuric V, Le Gall-David S, Boyer E, Acuña-Amador L, Martin B, Fong SB, Barloy-Hubler F, Bonnaure-Mallet M.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00462-17. doi: 10.1128/AEM.00462-17. Print 2017 Jul 15.

3.

Genetic determinants associated with cfxA-positive clinical Capnocytophaga isolates.

Tamanai-Shacoori Z, Dupont A, Auffret M, Peton V, Barloy-Hubler F, Ehrmann E, Ropert M, Bonnaure-Mallet M, Jolivet-Gougeon A.

Int J Antimicrob Agents. 2015 Sep;46(3):356-8. doi: 10.1016/j.ijantimicag.2015.05.006. Epub 2015 Jun 19. No abstract available.

4.

Identification and characterization of cichlid TAAR genes and comparison with other teleost TAAR repertoires.

Azzouzi N, Barloy-Hubler F, Galibert F.

BMC Genomics. 2015 Apr 23;16:335. doi: 10.1186/s12864-015-1478-4.

5.

Oral Gram-negative anaerobic bacilli as a reservoir of β-lactam resistance genes facilitating infections with multiresistant bacteria.

Dupin C, Tamanai-Shacoori Z, Ehrmann E, Dupont A, Barloy-Hubler F, Bousarghin L, Bonnaure-Mallet M, Jolivet-Gougeon A.

Int J Antimicrob Agents. 2015 Feb;45(2):99-105. doi: 10.1016/j.ijantimicag.2014.10.003. Epub 2014 Nov 3. Review.

PMID:
25465519
6.

The genomic substrate for adaptive radiation in African cichlid fish.

Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alföldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleton KL, Conte MA, D'Cotta H, Eshel O, Gaffney L, Galibert F, Gante HF, Gnerre S, Greuter L, Guyon R, Haddad NS, Haerty W, Harris RM, Hofmann HA, Hourlier T, Hulata G, Jaffe DB, Lara M, Lee AP, MacCallum I, Mwaiko S, Nikaido M, Nishihara H, Ozouf-Costaz C, Penman DJ, Przybylski D, Rakotomanga M, Renn SCP, Ribeiro FJ, Ron M, Salzburger W, Sanchez-Pulido L, Santos ME, Searle S, Sharpe T, Swofford R, Tan FJ, Williams L, Young S, Yin S, Okada N, Kocher TD, Miska EA, Lander ES, Venkatesh B, Fernald RD, Meyer A, Ponting CP, Streelman JT, Lindblad-Toh K, Seehausen O, Di Palma F.

Nature. 2014 Sep 18;513(7518):375-381. doi: 10.1038/nature13726. Epub 2014 Sep 3.

7.

Strong mutator phenotype drives faster adaptation from growth on glucose to growth on acetate in Salmonella.

Le Bars H, Bonnaure-Mallet M, Barloy-Hubler F, Jolivet-Gougeon A, Bousarghin L.

Microbiology. 2014 Oct;160(Pt 10):2264-71. doi: 10.1099/mic.0.079244-0. Epub 2014 Jul 16.

PMID:
25031423
8.

Inventory of the cichlid olfactory receptor gene repertoires: identification of olfactory genes with more than one coding exon.

Azzouzi N, Barloy-Hubler F, Galibert F.

BMC Genomics. 2014 Jul 11;15:586. doi: 10.1186/1471-2164-15-586.

9.

Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61.

Falentin H, Naquin D, Loux V, Barloy-Hubler F, Loubière P, Nouaille S, Lavenier D, Le Bourgeois P, François P, Schrenzel J, Hernandez D, Even S, Le Loir Y.

Genome Announc. 2014 Jan 16;2(1). pii: e01176-13. doi: 10.1128/genomeA.01176-13.

10.

Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development.

Ratié L, Ware M, Barloy-Hubler F, Romé H, Gicquel I, Dubourg C, David V, Dupé V.

Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.

11.

Treponema denticola improves adhesive capacities of Porphyromonas gingivalis.

Meuric V, Martin B, Guyodo H, Rouillon A, Tamanai-Shacoori Z, Barloy-Hubler F, Bonnaure-Mallet M.

Mol Oral Microbiol. 2013 Feb;28(1):40-53. doi: 10.1111/omi.12004. Epub 2012 Nov 1.

PMID:
23194417
12.

Assessment of the structural and functional impact of in-frame mutations of the DMD gene, using the tools included in the eDystrophin online database.

Nicolas A, Lucchetti-Miganeh C, Yaou RB, Kaplan JC, Chelly J, Leturcq F, Barloy-Hubler F, Le Rumeur E.

Orphanet J Rare Dis. 2012 Jul 9;7:45. doi: 10.1186/1750-1172-7-42.

13.

Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers.

Sérandour AA, Avner S, Oger F, Bizot M, Percevault F, Lucchetti-Miganeh C, Palierne G, Gheeraert C, Barloy-Hubler F, Péron CL, Madigou T, Durand E, Froguel P, Staels B, Lefebvre P, Métivier R, Eeckhoute J, Salbert G.

Nucleic Acids Res. 2012 Sep 1;40(17):8255-65. Epub 2012 Jun 22.

14.

Complete genome sequence of the strong mutator Salmonella enterica subsp. enterica serotype Heidelberg strain B182.

Le Bars H, Bousarghin L, Bonnaure-Mallet M, Jolivet-Gougeon A, Barloy-Hubler F.

J Bacteriol. 2012 Jul;194(13):3537-8. doi: 10.1128/JB.00498-12.

15.

SORGOdb: Superoxide Reductase Gene Ontology curated DataBase.

Lucchetti-Miganeh C, Goudenège D, Thybert D, Salbert G, Barloy-Hubler F.

BMC Microbiol. 2011 May 16;11:105. doi: 10.1186/1471-2180-11-105.

16.

Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers.

Sérandour AA, Avner S, Percevault F, Demay F, Bizot M, Lucchetti-Miganeh C, Barloy-Hubler F, Brown M, Lupien M, Métivier R, Salbert G, Eeckhoute J.

Genome Res. 2011 Apr;21(4):555-65. doi: 10.1101/gr.111534.110. Epub 2011 Jan 13.

17.

CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources.

Goudenège D, Avner S, Lucchetti-Miganeh C, Barloy-Hubler F.

BMC Microbiol. 2010 Mar 23;10:88. doi: 10.1186/1471-2180-10-88.

18.

Identification of a secreted lipolytic esterase in Propionibacterium freudenreichii, a ripening process bacterium involved in Emmental cheese lipolysis.

Dherbécourt J, Falentin H, Jardin J, Maillard MB, Baglinière F, Barloy-Hubler F, Thierry A.

Appl Environ Microbiol. 2010 Feb;76(4):1181-8. doi: 10.1128/AEM.02453-09. Epub 2009 Dec 28.

19.

OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes.

Thybert D, Avner S, Lucchetti-Miganeh C, Chéron A, Barloy-Hubler F.

BMC Genomics. 2008 Dec 31;9:637. doi: 10.1186/1471-2164-9-637.

20.

Analyzing stochastic transcription to elucidate the nucleoid's organization.

Riva A, Carpentier AS, Barloy-Hubler F, Chéron A, Hénaut A.

BMC Genomics. 2008 Mar 10;9:125. doi: 10.1186/1471-2164-9-125.

22.
23.

Characterization and expression patterns of Sinorhizobium meliloti tmRNA (ssrA).

Ulvé VM, Chéron A, Trautwetter A, Fontenelle C, Barloy-Hubler F.

FEMS Microbiol Lett. 2007 Apr;269(1):117-23. Epub 2007 Jan 15.

24.

Transcarboxylase mRNA: a marker which evidences P. freudenreichii survival and metabolic activity during its transit in the human gut.

Hervé C, Fondrevez M, Chéron A, Barloy-Hubler F, Jan G.

Int J Food Microbiol. 2007 Feb 15;113(3):303-14. Epub 2006 Dec 5.

PMID:
17156879
25.

Eukaryotic control on bacterial cell cycle and differentiation in the Rhizobium-legume symbiosis.

Mergaert P, Uchiumi T, Alunni B, Evanno G, Cheron A, Catrice O, Mausset AE, Barloy-Hubler F, Galibert F, Kondorosi A, Kondorosi E.

Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5230-5. Epub 2006 Mar 17.

26.

Smc01944, a secreted peroxidase induced by oxidative stresses in Sinorhizobium meliloti 1021.

Barloy-Hubler F, Chéron A, Hellégouarch A, Galibert F.

Microbiology. 2004 Mar;150(Pt 3):657-64.

PMID:
14993315
27.

Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.

Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, Gurjal M, Hong A, Huizar L, Hyman RW, Kahn D, Kahn ML, Kalman S, Keating DH, Palm C, Peck MC, Surzycki R, Wells DH, Yeh KC, Davis RW, Federspiel NA, Long SR.

Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9883-8. Epub 2001 Jul 31.

28.

Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.

Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, Dréano S, Gloux S, Godrie T, Goffeau A, Kahn D, Kiss E, Lelaure V, Masuy D, Pohl T, Portetelle D, Pühler A, Purnelle B, Ramsperger U, Renard C, Thébault P, Vandenbol M, Weidner S, Galibert F.

Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9877-82. Epub 2001 Jul 31.

29.

The composite genome of the legume symbiont Sinorhizobium meliloti.

Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, Bothe G, Boutry M, Bowser L, Buhrmester J, Cadieu E, Capela D, Chain P, Cowie A, Davis RW, Dreano S, Federspiel NA, Fisher RF, Gloux S, Godrie T, Goffeau A, Golding B, Gouzy J, Gurjal M, Hernandez-Lucas I, Hong A, Huizar L, Hyman RW, Jones T, Kahn D, Kahn ML, Kalman S, Keating DH, Kiss E, Komp C, Lelaure V, Masuy D, Palm C, Peck MC, Pohl TM, Portetelle D, Purnelle B, Ramsperger U, Surzycki R, Thebault P, Vandenbol M, Vorholter FJ, Weidner S, Wells DH, Wong K, Yeh KC, Batut J.

Science. 2001 Jul 27;293(5530):668-72.

30.
31.

Sequencing the Sinorhizobium meliloti genome.

Galibert F, Barloy-Hubler F, Capela D, Gouzy J.

DNA Seq. 2000;11(3-4):207-10.

PMID:
11092731
32.

High-resolution physical map of the pSymb megaplasmid and comparison of the three replicons of Sinorhizobium meliloti strain 1021.

Barloy-Hubler F, Capela D, Batut J, Galibert F.

Curr Microbiol. 2000 Aug;41(2):109-13.

PMID:
10856376
33.

High-resolution physical map of the Sinorhizobium meliloti 1021 pSyma megaplasmid.

Barloy-Hubler F, Capela D, Barnett MJ, Kalman S, Federspiel NA, Long SR, Galibert F.

J Bacteriol. 2000 Feb;182(4):1185-9.

34.

A high-density physical map of Sinorhizobium meliloti 1021 chromosome derived from bacterial artificial chromosome library.

Capela D, Barloy-Hubler F, Gatius MT, Gouzy J, Galibert F.

Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9357-62.

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