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Items: 48


Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus.

An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC.

Nat Commun. 2019 Jun 28;10(1):2878. doi: 10.1038/s41467-019-10757-1.


Reply to Nakatani and McLysaght: Analyzing deep duplication events.

Li Z, Tiley GP, Rundell RJ, Barker MS.

Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):1819-1820. doi: 10.1073/pnas.1819227116. Epub 2019 Jan 23. No abstract available.


Selection for sentence generation in the context of severe anomia: A case series of left temporal patients.

Barker MS, Robinson GA.

J Clin Exp Neuropsychol. 2019 May;41(4):353-363. doi: 10.1080/13803395.2018.1562050. Epub 2019 Jan 4.


Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications.

Tiley GP, Barker MS, Burleigh JG.

Genome Biol Evol. 2018 Nov 1;10(11):2882-2898. doi: 10.1093/gbe/evy200.


Energization and spoken language production: Evidence from progressive supranuclear palsy.

Barker MS, Nelson NL, O'Sullivan JD, Adam R, Robinson GA.

Neuropsychologia. 2018 Oct;119:349-362. doi: 10.1016/j.neuropsychologia.2018.09.004. Epub 2018 Sep 5.


Initiation, Inhibition and Strategy Generation Across the Healthy Adult Lifespan.

Gibson EC, Barker MS, Martin AK, Robinson GA.

Arch Clin Neuropsychol. 2019 Jun 1;34(4):511-523. doi: 10.1093/arclin/acy057.


Fern genomes elucidate land plant evolution and cyanobacterial symbioses.

Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM.

Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2.


Impact of whole-genome duplication events on diversification rates in angiosperms.

Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC, Soltis PS.

Am J Bot. 2018 Mar;105(3):348-363. doi: 10.1002/ajb2.1060. Epub 2018 May 2.


Multiple large-scale gene and genome duplications during the evolution of hexapods.

Li Z, Tiley GP, Galuska SR, Reardon CR, Kidder TI, Rundell RJ, Barker MS.

Proc Natl Acad Sci U S A. 2018 May 1;115(18):4713-4718. doi: 10.1073/pnas.1710791115. Epub 2018 Apr 19.


A Gneato nuclear genome.

Barker MS.

Nat Plants. 2018 Feb;4(2):63-64. doi: 10.1038/s41477-018-0102-4. No abstract available.


Genomic inferences of domestication events are corroborated by written records in Brassica rapa.

Qi X, An H, Ragsdale AP, Hall TE, Gutenkunst RN, Chris Pires J, Barker MS.

Mol Ecol. 2017 Jul;26(13):3373-3388. doi: 10.1111/mec.14131. Epub 2017 May 5.


Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention.

Mandáková T, Li Z, Barker MS, Lysak MA.

Plant J. 2017 Jul;91(1):3-21. doi: 10.1111/tpj.13553. Epub 2017 May 11.


Cohesive and coherent connected speech deficits in mild stroke.

Barker MS, Young B, Robinson GA.

Brain Lang. 2017 May;168:23-36. doi: 10.1016/j.bandl.2017.01.004. Epub 2017 Jan 21.


Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study.

Barker MS, Husband BC, Pires JC.

Am J Bot. 2016 Jul;103(7):1139-45. doi: 10.3732/ajb.1600272. Epub 2016 Aug 1. No abstract available.


Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae.

Barker MS, Li Z, Kidder TI, Reardon CR, Lai Z, Oliveira LO, Scascitelli M, Rieseberg LH.

Am J Bot. 2016 Jul;103(7):1203-11. doi: 10.3732/ajb.1600113. Epub 2016 Jun 16.


Is hybridization driving the evolution of climatic niche in Alyssum montanum.

Arrigo N, de La Harpe M, Litsios G, Zozomová-Lihová J, Španiel S, Marhold K, Barker MS, Alvarez N.

Am J Bot. 2016 Jul;103(7):1348-57. doi: 10.3732/ajb.1500368. Epub 2016 Apr 14.


The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution.

Baniaga AE, Arrigo N, Barker MS.

Genome Biol Evol. 2016 Jun 3;8(5):1516-25. doi: 10.1093/gbe/evw091.


Early genome duplications in conifers and other seed plants.

Li Z, Baniaga AE, Sessa EB, Scascitelli M, Graham SW, Rieseberg LH, Barker MS.

Sci Adv. 2015 Nov 20;1(10):e1501084. doi: 10.1126/sciadv.1501084. eCollection 2015 Nov.


Transcriptome-derived evidence supports recent polyploidization and a major phylogeographic division in Trithuria submersa (Hydatellaceae, Nymphaeales).

Marques I, Montgomery SA, Barker MS, Macfarlane TD, Conran JG, Catalán P, Rieseberg LH, Rudall PJ, Graham SW.

New Phytol. 2016 Apr;210(1):310-23. doi: 10.1111/nph.13755. Epub 2015 Nov 27.


On the relative abundance of autopolyploids and allopolyploids.

Barker MS, Arrigo N, Baniaga AE, Li Z, Levin DA.

New Phytol. 2016 Apr;210(2):391-8. doi: 10.1111/nph.13698. Epub 2015 Oct 6. No abstract available.


The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.


Depression and the incidence of urinary incontinence symptoms among young women: Results from a prospective cohort study.

Mishra GD, Barker MS, Herber-Gast GC, Hillard T.

Maturitas. 2015 Aug;81(4):456-61. doi: 10.1016/j.maturitas.2015.05.006. Epub 2015 May 22.


Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis et al. (2014).

Mayrose I, Zhan SH, Rothfels CJ, Arrigo N, Barker MS, Rieseberg LH, Otto SP.

New Phytol. 2015 Apr;206(1):27-35. doi: 10.1111/nph.13192. Epub 2014 Dec 4. No abstract available.


Phylotranscriptomic analysis of the origin and early diversification of land plants.

Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels CJ, Pokorny L, Shaw AJ, DeGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, dePamphilis CW, Chen T, Deyholos MK, Baucom RS, Kutchan TM, Augustin MM, Wang J, Zhang Y, Tian Z, Yan Z, Wu X, Sun X, Wong GK, Leebens-Mack J.

Proc Natl Acad Sci U S A. 2014 Nov 11;111(45):E4859-68. doi: 10.1073/pnas.1323926111. Epub 2014 Oct 29.


Between two fern genomes.

Sessa EB, Banks JA, Barker MS, Der JP, Duffy AM, Graham SW, Hasebe M, Langdale J, Li FW, Marchant DB, Pryer KM, Rothfels CJ, Roux SJ, Salmi ML, Sigel EM, Soltis DE, Soltis PS, Stevenson DW, Wolf PG.

Gigascience. 2014 Sep 25;3:15. doi: 10.1186/2047-217X-3-15. eCollection 2014. Review.


Change detection and change blindness in pigeons (Columba livia).

Herbranson WT, Trinh YT, Xi PM, Arand MP, Barker MS, Pratt TH.

J Comp Psychol. 2014 May;128(2):181-7. doi: 10.1037/a0034567. Epub 2013 Nov 4.


Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives.

Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Mol Ecol Resour. 2014 Jan;14(1):166-77. doi: 10.1111/1755-0998.12163. Epub 2013 Sep 18.


A total evidence approach to understanding phylogenetic relationships and ecological diversity in Selaginella subg. Tetragonostachys.

Arrigo N, Therrien J, Anderson CL, Windham MD, Haufler CH, Barker MS.

Am J Bot. 2013 Aug;100(8):1672-82. doi: 10.3732/ajb.1200426. Epub 2013 Aug 8.


Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms.

Bowers JE, Nambeesan S, Corbi J, Barker MS, Rieseberg LH, Knapp SJ, Burke JM.

PLoS One. 2012;7(12):e51360. doi: 10.1371/journal.pone.0051360. Epub 2012 Dec 19.


Quantitative visualization of biological data in Google Earth using R2G2, an R CRAN package.

Arrigo N, Albert LP, Mickelson PG, Barker MS.

Mol Ecol Resour. 2012 Nov;12(6):1177-9. doi: 10.1111/1755-0998.12012. Epub 2012 Sep 21.


Rarely successful polyploids and their legacy in plant genomes.

Arrigo N, Barker MS.

Curr Opin Plant Biol. 2012 Apr;15(2):140-6. doi: 10.1016/j.pbi.2012.03.010. Epub 2012 Apr 3. Review.


Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.

Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.

Am J Bot. 2012 Feb;99(2):209-18. doi: 10.3732/ajb.1100313. Epub 2011 Nov 4.


Recently formed polyploid plants diversify at lower rates.

Mayrose I, Zhan SH, Rothfels CJ, Magnuson-Ford K, Barker MS, Rieseberg LH, Otto SP.

Science. 2011 Sep 2;333(6047):1257. doi: 10.1126/science.1207205. Epub 2011 Aug 18.


Molecular evolution across the Asteraceae: micro- and macroevolutionary processes.

Kane NC, Barker MS, Zhan SH, Rieseberg LH.

Mol Biol Evol. 2011 Dec;28(12):3225-35. doi: 10.1093/molbev/msr166. Epub 2011 Jun 20.


Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome.

Dempewolf H, Kane NC, Ostevik KL, Geleta M, Barker MS, Lai Z, Stewart ML, Bekele E, Engels JM, Cronk QC, Rieseberg LH.

Mol Ecol Resour. 2010 Nov;10(6):1048-58. doi: 10.1111/j.1755-0998.2010.02859.x.


The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, Bonawitz ND, Chapple C, Cheng C, Correa LG, Dacre M, DeBarry J, Dreyer I, Elias M, Engstrom EM, Estelle M, Feng L, Finet C, Floyd SK, Frommer WB, Fujita T, Gramzow L, Gutensohn M, Harholt J, Hattori M, Heyl A, Hirai T, Hiwatashi Y, Ishikawa M, Iwata M, Karol KG, Koehler B, Kolukisaoglu U, Kubo M, Kurata T, Lalonde S, Li K, Li Y, Litt A, Lyons E, Manning G, Maruyama T, Michael TP, Mikami K, Miyazaki S, Morinaga S, Murata T, Mueller-Roeber B, Nelson DR, Obara M, Oguri Y, Olmstead RG, Onodera N, Petersen BL, Pils B, Prigge M, Rensing SA, Riaño-Pachón DM, Roberts AW, Sato Y, Scheller HV, Schulz B, Schulz C, Shakirov EV, Shibagaki N, Shinohara N, Shippen DE, Sørensen I, Sotooka R, Sugimoto N, Sugita M, Sumikawa N, Tanurdzic M, Theissen G, Ulvskov P, Wakazuki S, Weng JK, Willats WW, Wipf D, Wolf PG, Yang L, Zimmer AD, Zhu Q, Mitros T, Hellsten U, Loqué D, Otillar R, Salamov A, Schmutz J, Shapiro H, Lindquist E, Lucas S, Rokhsar D, Grigoriev IV.

Science. 2011 May 20;332(6032):960-3. doi: 10.1126/science.1203810. Epub 2011 May 5.


De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum.

Der JP, Barker MS, Wickett NJ, dePamphilis CW, Wolf PG.

BMC Genomics. 2011 Feb 8;12:99. doi: 10.1186/1471-2164-12-99.

38. Bioinformatic Tools for Ecological and Evolutionary Genomics.

Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, King MG, Rieseberg LH.

Evol Bioinform Online. 2010 Oct 20;6:143-9. doi: 10.4137/EBO.S5861.


NU-IN: Nucleotide evolution and input module for the EvolSimulator genome simulation platform.

Dlugosch KM, Barker MS, Rieseberg LH.

BMC Res Notes. 2010 Aug 2;3:217. doi: 10.1186/1756-0500-3-217.


Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales.

Shi T, Huang H, Barker MS.

Ann Bot. 2010 Sep;106(3):497-504. doi: 10.1093/aob/mcq129. Epub 2010 Jun 24.


Probabilistic models of chromosome number evolution and the inference of polyploidy.

Mayrose I, Barker MS, Otto SP.

Syst Biol. 2010 Mar;59(2):132-44. doi: 10.1093/sysbio/syp083. Epub 2009 Dec 10.


The frequency of polyploid speciation in vascular plants.

Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13875-9. doi: 10.1073/pnas.0811575106. Epub 2009 Aug 10.


Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species.

Kane NC, King MG, Barker MS, Raduski A, Karrenberg S, Yatabe Y, Knapp SJ, Rieseberg LH.

Evolution. 2009 Aug;63(8):2061-75. doi: 10.1111/j.1558-5646.2009.00703.x. Epub 2009 May 9.


SCARF: maximizing next-generation EST assemblies for evolutionary and population genomic analyses.

Barker MS, Dlugosch KM, Reddy AC, Amyotte SN, Rieseberg LH.

Bioinformatics. 2009 Feb 15;25(4):535-6. doi: 10.1093/bioinformatics/btp011. Epub 2009 Jan 6.


Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years.

Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH.

Mol Biol Evol. 2008 Nov;25(11):2445-55. doi: 10.1093/molbev/msn187. Epub 2008 Aug 26.


Gene co-inheritance and gene transfer.

Brandvain Y, Barker MS, Wade MJ.

Science. 2007 Mar 23;315(5819):1685.


Maternal expression relaxes constraint on innovation of the anterior determinant, bicoid.

Barker MS, Demuth JP, Wade MJ.

PLoS Genet. 2005 Nov;1(5):e57. Epub 2005 Nov 11.

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