Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 39

1.

Microbial Communities of Polymetallic Deposits' Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts.

Gavrilov SN, Korzhenkov AA, Kublanov IV, Bargiela R, Zamana LV, Popova AA, Toshchakov SV, Golyshin PN, Golyshina OV.

Front Microbiol. 2019 Jul 17;10:1573. doi: 10.3389/fmicb.2019.01573. eCollection 2019.

2.

Diversity of "Ca. Micrarchaeota" in Two Distinct Types of Acidic Environments and Their Associations with Thermoplasmatales.

Golyshina OV, Bargiela R, Toshchakov SV, Chernyh NA, Ramayah S, Korzhenkov AA, Kublanov IV, Golyshin PN.

Genes (Basel). 2019 Jun 15;10(6). pii: E461. doi: 10.3390/genes10060461.

3.

Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity.

Korzhenkov AA, Toshchakov SV, Bargiela R, Gibbard H, Ferrer M, Teplyuk AV, Jones DL, Kublanov IV, Golyshin PN, Golyshina OV.

Microbiome. 2019 Jan 28;7(1):11. doi: 10.1186/s40168-019-0623-8.

4.

Decoding the ocean's microbiological secrets for marine enzyme biodiscovery.

Ferrer M, Méndez-García C, Bargiela R, Chow J, Alonso S, García-Moyano A, Bjerga GEK, Steen IH, Schwabe T, Blom C, Vester J, Weckbecker A, Shahgaldian P, de Carvalho CCCR, Meskys R, Zanaroli G, Glöckner FO, Fernández-Guerra A, Thambisetty S, de la Calle F, Golyshina OV, Yakimov MM, Jaeger KE, Yakunin AF, Streit WR, McMeel O, Calewaert JB, Tonné N, Golyshin PN; INMARE Consortium.

FEMS Microbiol Lett. 2019 Jan 1;366(1). doi: 10.1093/femsle/fny285.

5.

Cuniculiplasmataceae, their ecogenomic and metabolic patterns, and interactions with 'ARMAN'.

Golyshina OV, Bargiela R, Golyshin PN.

Extremophiles. 2019 Jan;23(1):1-7. doi: 10.1007/s00792-018-1071-2. Epub 2018 Nov 29. Review.

6.

Bioprospecting Reveals Class III ω-Transaminases Converting Bulky Ketones and Environmentally Relevant Polyamines.

Coscolín C, Katzke N, García-Moyano A, Navarro-Fernández J, Almendral D, Martínez-Martínez M, Bollinger A, Bargiela R, Gertler C, Chernikova TN, Rojo D, Barbas C, Tran H, Golyshina OV, Koch R, Yakimov MM, Bjerga GEK, Golyshin PN, Jaeger KE, Ferrer M.

Appl Environ Microbiol. 2019 Jan 9;85(2). pii: e02404-18. doi: 10.1128/AEM.02404-18. Print 2019 Jan 15.

7.

Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota.

Deusch S, Serrano-Villar S, Rojo D, Martínez-Martínez M, Bargiela R, Vázquez-Castellanos JF, Sainz T, Barbas C, Moya A, Moreno S, Gosalbes MJ, Estrada V, Seifert J, Ferrer M.

AIDS. 2018 Jun 19;32(10):1229-1237. doi: 10.1097/QAD.0000000000001831.

PMID:
29683848
8.

Rational Engineering of Multiple Active Sites in an Ester Hydrolase.

Santiago G, Martínez-Martínez M, Alonso S, Bargiela R, Coscolín C, Golyshin PN, Guallar V, Ferrer M.

Biochemistry. 2018 Apr 17;57(15):2245-2255. doi: 10.1021/acs.biochem.8b00274. Epub 2018 Mar 30.

9.

Draft Genome Sequence of Monaibacterium marinum C7T, Isolated from Seawater from the Menai Straits, Wales, United Kingdom.

Chernikova TN, Kyrpides N, Bargiela R, Woyke T, Shapiro N, Whitman WB, Golyshin PN.

Genome Announc. 2018 Feb 1;6(5). pii: e01444-17. doi: 10.1128/genomeA.01444-17.

10.

Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, "Methanonatronarchaeia".

Ferrer M, Sorokin DY, Wolf YI, Ciordia S, Mena MC, Bargiela R, Koonin EV, Makarova KS.

Genes (Basel). 2018 Jan 23;9(2). pii: E28. doi: 10.3390/genes9020028.

11.

Determinants and Prediction of Esterase Substrate Promiscuity Patterns.

Martínez-Martínez M, Coscolín C, Santiago G, Chow J, Stogios PJ, Bargiela R, Gertler C, Navarro-Fernández J, Bollinger A, Thies S, Méndez-García C, Popovic A, Brown G, Chernikova TN, García-Moyano A, Bjerga GEK, Pérez-García P, Hai T, Del Pozo MV, Stokke R, Steen IH, Cui H, Xu X, Nocek BP, Alcaide M, Distaso M, Mesa V, Peláez AI, Sánchez J, Buchholz PCF, Pleiss J, Fernández-Guerra A, Glöckner FO, Golyshina OV, Yakimov MM, Savchenko A, Jaeger KE, Yakunin AF, Streit WR, Golyshin PN, Guallar V, Ferrer M, The Inmare Consortium.

ACS Chem Biol. 2018 Jan 19;13(1):225-234. doi: 10.1021/acschembio.7b00996. Epub 2017 Dec 20.

PMID:
29182315
12.

Exploring the human microbiome from multiple perspectives: factors altering its composition and function.

Rojo D, Méndez-García C, Raczkowska BA, Bargiela R, Moya A, Ferrer M, Barbas C.

FEMS Microbiol Rev. 2017 Jul 1;41(4):453-478. doi: 10.1093/femsre/fuw046. Review.

13.

Degradation Network Reconstruction Guided by Metagenomic Data.

Bargiela R, Ferrer M.

Methods Mol Biol. 2017;1539:145-157.

PMID:
27900688
14.

Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

Bourguignon N, Bargiela R, Rojo D, Chernikova TN, de Rodas SA, García-Cantalejo J, Näther DJ, Golyshin PN, Barbas C, Ferrero M, Ferrer M.

World J Microbiol Biotechnol. 2016 Dec;32(12):201. Epub 2016 Oct 26.

PMID:
27785708
15.

Gut Bacteria Metabolism Impacts Immune Recovery in HIV-infected Individuals.

Serrano-Villar S, Rojo D, Martínez-Martínez M, Deusch S, Vázquez-Castellanos JF, Bargiela R, Sainz T, Vera M, Moreno S, Estrada V, Gosalbes MJ, Latorre A, Seifert J, Barbas C, Moya A, Ferrer M.

EBioMedicine. 2016 Jun;8:203-216. doi: 10.1016/j.ebiom.2016.04.033. Epub 2016 Apr 27.

16.

Degradation Network Reconstruction in Uric Acid and Ammonium Amendments in Oil-Degrading Marine Microcosms Guided by Metagenomic Data.

Bargiela R, Gertler C, Magagnini M, Mapelli F, Chen J, Daffonchio D, Golyshin PN, Ferrer M.

Front Microbiol. 2015 Nov 24;6:1270. doi: 10.3389/fmicb.2015.01270. eCollection 2015.

17.

Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.

Ferrer M, Martínez-Martínez M, Bargiela R, Streit WR, Golyshina OV, Golyshin PN.

Microb Biotechnol. 2016 Jan;9(1):22-34. doi: 10.1111/1751-7915.12309. Epub 2015 Aug 14. Review.

18.

Metaproteomics and metabolomics analyses of chronically petroleum-polluted sites reveal the importance of general anaerobic processes uncoupled with degradation.

Bargiela R, Herbst FA, Martínez-Martínez M, Seifert J, Rojo D, Cappello S, Genovese M, Crisafi F, Denaro R, Chernikova TN, Barbas C, von Bergen M, Yakimov MM, Ferrer M, Golyshin PN.

Proteomics. 2015 Oct;15(20):3508-20. doi: 10.1002/pmic.201400614. Epub 2015 Aug 27.

19.

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature.

Bargiela R, Mapelli F, Rojo D, Chouaia B, Tornés J, Borin S, Richter M, Del Pozo MV, Cappello S, Gertler C, Genovese M, Denaro R, Martínez-Martínez M, Fodelianakis S, Amer RA, Bigazzi D, Han X, Chen J, Chernikova TN, Golyshina OV, Mahjoubi M, Jaouanil A, Benzha F, Magagnini M, Hussein E, Al-Horani F, Cherif A, Blaghen M, Abdel-Fattah YR, Kalogerakis N, Barbas C, Malkawi HI, Golyshin PN, Yakimov MM, Daffonchio D, Ferrer M.

Sci Rep. 2015 Jun 29;5:11651. doi: 10.1038/srep11651.

20.

Erratum to: Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN.

Microb Ecol. 2015 Nov;70(4):1034. doi: 10.1007/s00248-015-0631-6. No abstract available.

PMID:
26066513
21.

Conversion of Uric Acid into Ammonium in Oil-Degrading Marine Microbial Communities: a Possible Role of Halomonads.

Gertler C, Bargiela R, Mapelli F, Han X, Chen J, Hai T, Amer RA, Mahjoubi M, Malkawi H, Magagnini M, Cherif A, Abdel-Fattah YR, Kalogerakis N, Daffonchio D, Ferrer M, Golyshin PN.

Microb Ecol. 2015 Oct;70(3):724-40. doi: 10.1007/s00248-015-0606-7. Epub 2015 Apr 29. Erratum in: Microb Ecol. 2015 Nov;70(4):1034.

22.

Heterotrophic bicarbonate assimilation is the main process of de novo organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest part of Mediterranean Sea.

Yakimov MM, La Cono V, Smedile F, Crisafi F, Arcadi E, Leonardi M, Decembrini F, Catalfamo M, Bargiela R, Ferrer M, Golyshin PN, Giuliano L.

Environ Microbiol Rep. 2014 Dec;6(6):709-22.

PMID:
25756124
23.

Ranking the impact of human health disorders on gut metabolism: systemic lupus erythematosus and obesity as study cases.

Rojo D, Hevia A, Bargiela R, López P, Cuervo A, González S, Suárez A, Sánchez B, Martínez-Martínez M, Milani C, Ventura M, Barbas C, Moya A, Suárez A, Margolles A, Ferrer M.

Sci Rep. 2015 Feb 6;5:8310. doi: 10.1038/srep08310.

24.

Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.

Tobalina L, Bargiela R, Pey J, Herbst FA, Lores I, Rojo D, Barbas C, Peláez AI, Sánchez J, von Bergen M, Seifert J, Ferrer M, Planes FJ.

Bioinformatics. 2015 Jun 1;31(11):1771-9. doi: 10.1093/bioinformatics/btv036. Epub 2015 Jan 23.

PMID:
25618865
25.

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics.

Alcaide M, Tchigvintsev A, Martínez-Martínez M, Popovic A, Reva ON, Lafraya Á, Bargiela R, Nechitaylo TY, Matesanz R, Cambon-Bonavita MA, Jebbar M, Yakimov MM, Savchenko A, Golyshina OV, Yakunin AF, Golyshin PN, Ferrer M; MAMBA Consortium.

Appl Environ Microbiol. 2015 Mar;81(6):2125-36. doi: 10.1128/AEM.03387-14. Epub 2015 Jan 16.

26.

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.

Alcaide M, Stogios PJ, Lafraya Á, Tchigvintsev A, Flick R, Bargiela R, Chernikova TN, Reva ON, Hai T, Leggewie CC, Katzke N, La Cono V, Matesanz R, Jebbar M, Jaeger KE, Yakimov MM, Yakunin AF, Golyshin PN, Golyshina OV, Savchenko A, Ferrer M; MAMBA Consortium.

Environ Microbiol. 2015 Feb;17(2):332-45. doi: 10.1111/1462-2920.12660. Epub 2014 Dec 17.

PMID:
25330254
27.

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium.

Kubacka A, Diez MS, Rojo D, Bargiela R, Ciordia S, Zapico I, Albar JP, Barbas C, Martins dos Santos VA, Fernández-García M, Ferrer M.

Sci Rep. 2014 Feb 19;4:4134. doi: 10.1038/srep04134.

28.

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage.

Méndez-García C, Mesa V, Sprenger RR, Richter M, Diez MS, Solano J, Bargiela R, Golyshina OV, Manteca Á, Ramos JL, Gallego JR, Llorente I, Martins dos Santos VA, Jensen ON, Peláez AI, Sánchez J, Ferrer M.

ISME J. 2014 Jun;8(6):1259-74. doi: 10.1038/ismej.2013.242. Epub 2014 Jan 16.

29.

Biochemical studies on a versatile esterase that is most catalytically active with polyaromatic esters.

Martínez-Martínez M, Lores I, Peña-García C, Bargiela R, Reyes-Duarte D, Guazzaroni ME, Peláez AI, Sánchez J, Ferrer M.

Microb Biotechnol. 2014 Mar;7(2):184-91. doi: 10.1111/1751-7915.12107. Epub 2014 Jan 13.

30.

Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori.

Choi HP, Juarez S, Ciordia S, Fernandez M, Bargiela R, Albar JP, Mazumdar V, Anton BP, Kasif S, Ferrer M, Steffen M.

PLoS One. 2013 Jun 18;8(6):e66605. doi: 10.1371/journal.pone.0066605. Print 2013.

31.

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity.

Hernández E, Bargiela R, Diez MS, Friedrichs A, Pérez-Cobas AE, Gosalbes MJ, Knecht H, Martínez-Martínez M, Seifert J, von Bergen M, Artacho A, Ruiz A, Campoy C, Latorre A, Ott SJ, Moya A, Suárez A, Martins dos Santos VA, Ferrer M.

Gut Microbes. 2013 Jul-Aug;4(4):306-15. doi: 10.4161/gmic.25321. Epub 2013 Jun 12.

32.

Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family.

Alcaide M, Tornés J, Stogios PJ, Xu X, Gertler C, Di Leo R, Bargiela R, Lafraya A, Guazzaroni ME, López-Cortés N, Chernikova TN, Golyshina OV, Nechitaylo TY, Plumeier I, Pieper DH, Yakimov MM, Savchenko A, Golyshin PN, Ferrer M.

Biochem J. 2013 Aug 15;454(1):157-66. doi: 10.1042/BJ20130552.

PMID:
23750508
33.

Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach.

Martínez-Martínez M, Alcaide M, Tchigvintsev A, Reva O, Polaina J, Bargiela R, Guazzaroni ME, Chicote A, Canet A, Valero F, Rico Eguizabal E, Guerrero Mdel C, Yakunin AF, Ferrer M.

Appl Environ Microbiol. 2013 Jun;79(12):3553-62. doi: 10.1128/AEM.00240-13. Epub 2013 Mar 29.

34.

Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx.

Alcaide M, Messina E, Richter M, Bargiela R, Peplies J, Huws SA, Newbold CJ, Golyshin PN, Simón MA, López G, Yakimov MM, Ferrer M.

PLoS One. 2012;7(12):e51521. doi: 10.1371/journal.pone.0051521. Epub 2012 Dec 12.

35.

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach.

Pérez-Cobas AE, Gosalbes MJ, Friedrichs A, Knecht H, Artacho A, Eismann K, Otto W, Rojo D, Bargiela R, von Bergen M, Neulinger SC, Däumer C, Heinsen FA, Latorre A, Barbas C, Seifert J, dos Santos VM, Ott SJ, Ferrer M, Moya A.

Gut. 2013 Nov;62(11):1591-601. doi: 10.1136/gutjnl-2012-303184. Epub 2012 Dec 12.

36.

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure.

Ferrer M, Ruiz A, Lanza F, Haange SB, Oberbach A, Till H, Bargiela R, Campoy C, Segura MT, Richter M, von Bergen M, Seifert J, Suarez A.

Environ Microbiol. 2013 Jan;15(1):211-26. doi: 10.1111/j.1462-2920.2012.02845.x. Epub 2012 Aug 14.

PMID:
22891823
37.

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

Guazzaroni ME, Herbst FA, Lores I, Tamames J, Peláez AI, López-Cortés N, Alcaide M, Del Pozo MV, Vieites JM, von Bergen M, Gallego JL, Bargiela R, López-López A, Pieper DH, Rosselló-Móra R, Sánchez J, Seifert J, Ferrer M.

ISME J. 2013 Jan;7(1):122-36. doi: 10.1038/ismej.2012.82. Epub 2012 Jul 26.

38.

Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study.

Ferrer M, Werner J, Chernikova TN, Bargiela R, Fernández L, La Cono V, Waldmann J, Teeling H, Golyshina OV, Glöckner FO, Yakimov MM, Golyshin PN; MAMBA Scientific Consortium.

Environ Microbiol. 2012 Jan;14(1):268-81. doi: 10.1111/j.1462-2920.2011.02634.x. Epub 2011 Oct 31.

PMID:
22040283
39.

Draft genome sequence of the electricigen Acidiphilium sp. strain PM (DSM 24941).

San Martin-Uriz P, Gomez MJ, Arcas A, Bargiela R, Amils R.

J Bacteriol. 2011 Oct;193(19):5585-6. doi: 10.1128/JB.05386-11.

Supplemental Content

Loading ...
Support Center