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Special Issue: Repetitive DNA Sequences.

Lower SE, Dion-Côté AM, Clark AG, Barbash DA.

Genes (Basel). 2019 Nov 6;10(11). pii: E896. doi: 10.3390/genes10110896.


Rates and Patterns of Mutation in Tandem Repetitive DNA in Six Independent Lineages of Chlamydomonas reinhardtii.

Flynn JM, Lower SE, Barbash DA, Clark AG.

Genome Biol Evol. 2018 Jul 1;10(7):1673-1686. doi: 10.1093/gbe/evy123.


Double insertion of transposable elements provides a substrate for the evolution of satellite DNA.

McGurk MP, Barbash DA.

Genome Res. 2018 May;28(5):714-725. doi: 10.1101/gr.231472.117. Epub 2018 Mar 27.


Satellite DNA evolution: old ideas, new approaches.

Lower SS, McGurk MP, Clark AG, Barbash DA.

Curr Opin Genet Dev. 2018 Apr;49:70-78. doi: 10.1016/j.gde.2018.03.003. Epub 2018 Mar 23. Review.


Did Mitochondria Kill the Frog?

Marsit S, Dion-Côté AM, Barbash DA.

Dev Cell. 2018 Mar 12;44(5):539-541. doi: 10.1016/j.devcel.2018.02.020.


Variable Rates of Simple Satellite Gains across the Drosophila Phylogeny.

Wei KH, Lower SE, Caldas IV, Sless TJS, Barbash DA, Clark AG.

Mol Biol Evol. 2018 Apr 1;35(4):925-941. doi: 10.1093/molbev/msy005. Erratum in: Mol Biol Evol. 2018 Jul 1;35(7):1821.


Moving Speciation Genetics Forward: Modern Techniques Build on Foundational Studies in Drosophila.

Castillo DM, Barbash DA.

Genetics. 2017 Nov;207(3):825-842. doi: 10.1534/genetics.116.187120. Review.


The Hybrid Incompatibility Genes Lhr and Hmr Are Required for Sister Chromatid Detachment During Anaphase but Not for Centromere Function.

Blum JA, Bonaccorsi S, Marzullo M, Palumbo V, Yamashita YM, Barbash DA, Gatti M.

Genetics. 2017 Dec;207(4):1457-1472. doi: 10.1534/genetics.117.300390. Epub 2017 Oct 18.


Beyond speciation genes: an overview of genome stability in evolution and speciation.

Dion-Côté AM, Barbash DA.

Curr Opin Genet Dev. 2017 Dec;47:17-23. doi: 10.1016/j.gde.2017.07.014. Epub 2017 Aug 19. Review.


One-pot photoassisted synthesis, in situ photocatalytic testing for hydrogen generation and the mechanism of binary nitrogen and copper promoted titanium dioxide.

Taylor S, Mehta M, Barbash D, Samokhvalov A.

Photochem Photobiol Sci. 2017 Jun 14;16(6):916-924. doi: 10.1039/c6pp00477f.


A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver in Drosophila.

Wei KH, Reddy HM, Rathnam C, Lee J, Lin D, Ji S, Mason JM, Clark AG, Barbash DA.

Genetics. 2017 May;206(1):451-465. doi: 10.1534/genetics.116.197335. Epub 2017 Mar 3.


Towards controlled polymer brushes via a self-assembly-assisted-grafting-to approach.

Zhou T, Qi H, Han L, Barbash D, Li CY.

Nat Commun. 2016 Mar 24;7:11119. doi: 10.1038/ncomms11119.


The Drosophila bag of marbles Gene Interacts Genetically with Wolbachia and Shows Female-Specific Effects of Divergence.

Flores HA, Bubnell JE, Aquadro CF, Barbash DA.

PLoS Genet. 2015 Aug 20;11(8):e1005453. doi: 10.1371/journal.pgen.1005453. eCollection 2015 Aug.


Never settling down: frequent changes in sex chromosomes.

Wei KH, Barbash DA.

PLoS Biol. 2015 Apr 16;13(4):e1002077. doi: 10.1371/journal.pbio.1002077. eCollection 2015 Apr.


Adaptive evolution of genes involved in the regulation of germline stem cells in Drosophila melanogaster and D. simulans.

Flores HA, DuMont VL, Fatoo A, Hubbard D, Hijji M, Barbash DA, Aquadro CF.

G3 (Bethesda). 2015 Feb 9;5(4):583-92. doi: 10.1534/g3.114.015875.


Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs.

Kern AD, Barbash DA, Chang Mell J, Hupalo D, Jensen A.

Genome Biol Evol. 2015 Jan 23;7(3):689-98. doi: 10.1093/gbe/evv011.


Correlated variation and population differentiation in satellite DNA abundance among lines of Drosophila melanogaster.

Wei KH, Grenier JK, Barbash DA, Clark AG.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18793-8. doi: 10.1073/pnas.1421951112. Epub 2014 Dec 15.


Normal segregation of a foreign-species chromosome during Drosophila female meiosis despite extensive heterochromatin divergence.

Gilliland WD, Colwell EM, Osiecki DM, Park S, Lin D, Rathnam C, Barbash DA.

Genetics. 2015 Jan;199(1):73-83. doi: 10.1534/genetics.114.172072. Epub 2014 Nov 17.


A screen for F1 hybrid male rescue reveals no major-effect hybrid lethality loci in the Drosophila melanogaster autosomal genome.

Cuykendall TN, Satyaki P, Ji S, Clay DM, Edelman NB, Kimchy A, Li LH, Nuzzo EA, Parekh N, Park S, Barbash DA.

G3 (Bethesda). 2014 Oct 27;4(12):2451-60. doi: 10.1534/g3.114.014076.


Limited gene misregulation is exacerbated by allele-specific upregulation in lethal hybrids between Drosophila melanogaster and Drosophila simulans.

Wei KH, Clark AG, Barbash DA.

Mol Biol Evol. 2014 Jul;31(7):1767-78. doi: 10.1093/molbev/msu127. Epub 2014 Apr 9.


The Hmr and Lhr hybrid incompatibility genes suppress a broad range of heterochromatic repeats.

Satyaki PR, Cuykendall TN, Wei KH, Brideau NJ, Kwak H, Aruna S, Ferree PM, Ji S, Barbash DA.

PLoS Genet. 2014 Mar 20;10(3):e1004240. doi: 10.1371/journal.pgen.1004240. eCollection 2014 Mar.


Heterochromatin position effects on circularized sex chromosomes cause filicidal embryonic lethality in Drosophila melanogaster.

Ferree PM, Gomez K, Rominger P, Howard D, Kornfeld H, Barbash DA.

Genetics. 2014 Apr;196(4):1001-5. doi: 10.1534/genetics.113.161075. Epub 2014 Jan 29.


Joint representation of depth from motion parallax and binocular disparity cues in macaque area MT.

Nadler JW, Barbash D, Kim HR, Shimpi S, Angelaki DE, DeAngelis GC.

J Neurosci. 2013 Aug 28;33(35):14061-74, 14074a. doi: 10.1523/JNEUROSCI.0251-13.2013.


Analysis of piRNA-mediated silencing of active TEs in Drosophila melanogaster suggests limits on the evolution of host genome defense.

Kelleher ES, Barbash DA.

Mol Biol Evol. 2013 Aug;30(8):1816-29. doi: 10.1093/molbev/mst081. Epub 2013 Apr 26.


Drosophila interspecific hybrids phenocopy piRNA-pathway mutants.

Kelleher ES, Edelman NB, Barbash DA.

PLoS Biol. 2012;10(11):e1001428. doi: 10.1371/journal.pbio.1001428. Epub 2012 Nov 20.


An indel polymorphism in the hybrid incompatibility gene lethal hybrid rescue of Drosophila is functionally relevant.

Maheshwari S, Barbash DA.

Genetics. 2012 Oct;192(2):683-91. doi: 10.1534/genetics.112.141952. Epub 2012 Aug 3.


Cis-by-Trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene.

Maheshwari S, Barbash DA.

PLoS Genet. 2012;8(3):e1002597. doi: 10.1371/journal.pgen.1002597. Epub 2012 Mar 22.


Comment on "A test of the snowball theory for the rate of evolution of hybrid incompatibilities".

Barbash DA.

Science. 2011 Sep 16;333(6049):1576; author reply 1576. doi: 10.1126/science.1202876.


The genetics of hybrid incompatibilities.

Maheshwari S, Barbash DA.

Annu Rev Genet. 2011;45:331-55. doi: 10.1146/annurev-genet-110410-132514. Epub 2011 Sep 6. Review.


Functional conservation of the Drosophila hybrid incompatibility gene Lhr.

Brideau NJ, Barbash DA.

BMC Evol Biol. 2011 Mar 2;11:57. doi: 10.1186/1471-2148-11-57.


Ninety years of Drosophila melanogaster hybrids.

Barbash DA.

Genetics. 2010 Sep;186(1):1-8. doi: 10.1534/genetics.110.121459.


Evolutionary biology: Expanding islands of speciation.

Kelleher ES, Barbash DA.

Nature. 2010 Jun 24;465(7301):1019-20. doi: 10.1038/4651019a. No abstract available.


Species-specific heterochromatin prevents mitotic chromosome segregation to cause hybrid lethality in Drosophila.

Ferree PM, Barbash DA.

PLoS Biol. 2009 Oct;7(10):e1000234. doi: 10.1371/journal.pbio.1000234. Epub 2009 Oct 27.


Genetic testing of the hypothesis that hybrid male lethality results from a failure in dosage compensation.

Barbash DA.

Genetics. 2010 Jan;184(1):313-6. doi: 10.1534/genetics.109.108100. Epub 2009 Oct 19.


Reduced fertility of Drosophila melanogaster hybrid male rescue (Hmr) mutant females is partially complemented by Hmr orthologs from sibling species.

Aruna S, Flores HA, Barbash DA.

Genetics. 2009 Apr;181(4):1437-50. doi: 10.1534/genetics.108.100057. Epub 2009 Jan 19.


Clash of the genomes.

Barbash DA.

Cell. 2008 Dec 12;135(6):1002-3. doi: 10.1016/j.cell.2008.11.019.


A novel imaging technique to investigate the influence of atomization air pressure on film-tablet interfacial thickness.

Barbash D, Fulghum JE, Yang J, Felton L.

Drug Dev Ind Pharm. 2009 Apr;35(4):480-6. doi: 10.1080/03639040802438381 .


The pachytene checkpoint and its relationship to evolutionary patterns of polyploidization and hybrid sterility.

Li XC, Barringer BC, Barbash DA.

Heredity (Edinb). 2009 Jan;102(1):24-30. doi: 10.1038/hdy.2008.84. Epub 2008 Sep 3. Review.


Recurrent positive selection of the Drosophila hybrid incompatibility gene Hmr.

Maheshwari S, Wang J, Barbash DA.

Mol Biol Evol. 2008 Nov;25(11):2421-30. doi: 10.1093/molbev/msn190. Epub 2008 Aug 28.


Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes.

Yang HP, Barbash DA.

Genome Biol. 2008;9(2):R39. doi: 10.1186/gb-2008-9-2-r39. Epub 2008 Feb 21.


Evolution of genes and genomes on the Drosophila phylogeny.

Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artieri CG, Barbash DA, Barker D, Barsanti P, Batterham P, Batzoglou S, Begun D, Bhutkar A, Blanco E, Bosak SA, Bradley RK, Brand AD, Brent MR, Brooks AN, Brown RH, Butlin RK, Caggese C, Calvi BR, Bernardo de Carvalho A, Caspi A, Castrezana S, Celniker SE, Chang JL, Chapple C, Chatterji S, Chinwalla A, Civetta A, Clifton SW, Comeron JM, Costello JC, Coyne JA, Daub J, David RG, Delcher AL, Delehaunty K, Do CB, Ebling H, Edwards K, Eickbush T, Evans JD, Filipski A, Findeiss S, Freyhult E, Fulton L, Fulton R, Garcia AC, Gardiner A, Garfield DA, Garvin BE, Gibson G, Gilbert D, Gnerre S, Godfrey J, Good R, Gotea V, Gravely B, Greenberg AJ, Griffiths-Jones S, Gross S, Guigo R, Gustafson EA, Haerty W, Hahn MW, Halligan DL, Halpern AL, Halter GM, Han MV, Heger A, Hillier L, Hinrichs AS, Holmes I, Hoskins RA, Hubisz MJ, Hultmark D, Huntley MA, Jaffe DB, Jagadeeshan S, Jeck WR, Johnson J, Jones CD, Jordan WC, Karpen GH, Kataoka E, Keightley PD, Kheradpour P, Kirkness EF, Koerich LB, Kristiansen K, Kudrna D, Kulathinal RJ, Kumar S, Kwok R, Lander E, Langley CH, Lapoint R, Lazzaro BP, Lee SJ, Levesque L, Li R, Lin CF, Lin MF, Lindblad-Toh K, Llopart A, Long M, Low L, Lozovsky E, Lu J, Luo M, Machado CA, Makalowski W, Marzo M, Matsuda M, Matzkin L, McAllister B, McBride CS, McKernan B, McKernan K, Mendez-Lago M, Minx P, Mollenhauer MU, Montooth K, Mount SM, Mu X, Myers E, Negre B, Newfeld S, Nielsen R, Noor MA, O'Grady P, Pachter L, Papaceit M, Parisi MJ, Parisi M, Parts L, Pedersen JS, Pesole G, Phillippy AM, Ponting CP, Pop M, Porcelli D, Powell JR, Prohaska S, Pruitt K, Puig M, Quesneville H, Ram KR, Rand D, Rasmussen MD, Reed LK, Reenan R, Reily A, Remington KA, Rieger TT, Ritchie MG, Robin C, Rogers YH, Rohde C, Rozas J, Rubenfield MJ, Ruiz A, Russo S, Salzberg SL, Sanchez-Gracia A, Saranga DJ, Sato H, Schaeffer SW, Schatz MC, Schlenke T, Schwartz R, Segarra C, Singh RS, Sirot L, Sirota M, Sisneros NB, Smith CD, Smith TF, Spieth J, Stage DE, Stark A, Stephan W, Strausberg RL, Strempel S, Sturgill D, Sutton G, Sutton GG, Tao W, Teichmann S, Tobari YN, Tomimura Y, Tsolas JM, Valente VL, Venter E, Venter JC, Vicario S, Vieira FG, Vilella AJ, Villasante A, Walenz B, Wang J, Wasserman M, Watts T, Wilson D, Wilson RK, Wing RA, Wolfner MF, Wong A, Wong GK, Wu CI, Wu G, Yamamoto D, Yang HP, Yang SP, Yorke JA, Yoshida K, Zdobnov E, Zhang P, Zhang Y, Zimin AV, Baldwin J, Abdouelleil A, Abdulkadir J, Abebe A, Abera B, Abreu J, Acer SC, Aftuck L, Alexander A, An P, Anderson E, Anderson S, Arachi H, Azer M, Bachantsang P, Barry A, Bayul T, Berlin A, Bessette D, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Bourzgui I, Brown A, Cahill P, Channer S, Cheshatsang Y, Chuda L, Citroen M, Collymore A, Cooke P, Costello M, D'Aco K, Daza R, De Haan G, DeGray S, DeMaso C, Dhargay N, Dooley K, Dooley E, Doricent M, Dorje P, Dorjee K, Dupes A, Elong R, Falk J, Farina A, Faro S, Ferguson D, Fisher S, Foley CD, Franke A, Friedrich D, Gadbois L, Gearin G, Gearin CR, Giannoukos G, Goode T, Graham J, Grandbois E, Grewal S, Gyaltsen K, Hafez N, Hagos B, Hall J, Henson C, Hollinger A, Honan T, Huard MD, Hughes L, Hurhula B, Husby ME, Kamat A, Kanga B, Kashin S, Khazanovich D, Kisner P, Lance K, Lara M, Lee W, Lennon N, Letendre F, LeVine R, Lipovsky A, Liu X, Liu J, Liu S, Lokyitsang T, Lokyitsang Y, Lubonja R, Lui A, MacDonald P, Magnisalis V, Maru K, Matthews C, McCusker W, McDonough S, Mehta T, Meldrim J, Meneus L, Mihai O, Mihalev A, Mihova T, Mittelman R, Mlenga V, Montmayeur A, Mulrain L, Navidi A, Naylor J, Negash T, Nguyen T, Nguyen N, Nicol R, Norbu C, Norbu N, Novod N, O'Neill B, Osman S, Markiewicz E, Oyono OL, Patti C, Phunkhang P, Pierre F, Priest M, Raghuraman S, Rege F, Reyes R, Rise C, Rogov P, Ross K, Ryan E, Settipalli S, Shea T, Sherpa N, Shi L, Shih D, Sparrow T, Spaulding J, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Strader C, Tesfaye S, Thomson T, Thoulutsang Y, Thoulutsang D, Topham K, Topping I, Tsamla T, Vassiliev H, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Young G, Yu Q, Zembek L, Zhong D, Zimmer A, Zwirko Z, Jaffe DB, Alvarez P, Brockman W, Butler J, Chin C, Gnerre S, Grabherr M, Kleber M, Mauceli E, MacCallum I.

Nature. 2007 Nov 8;450(7167):203-18.


Distorted sex ratios: a window into RNAi-mediated silencing.

Ferree PM, Barbash DA.

PLoS Biol. 2007 Nov 6;5(11):e303. No abstract available.


Developmental and cell cycle progression defects in Drosophila hybrid males.

Bolkan BJ, Booker R, Goldberg ML, Barbash DA.

Genetics. 2007 Dec;177(4):2233-41. Epub 2007 Oct 18.


Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila.

Brideau NJ, Flores HA, Wang J, Maheshwari S, Wang X, Barbash DA.

Science. 2006 Nov 24;314(5803):1292-5.


Functional divergence caused by ancient positive selection of a Drosophila hybrid incompatibility locus.

Barbash DA, Awadalla P, Tarone AM.

PLoS Biol. 2004 Jun;2(6):e142. Epub 2004 Jun 15.


A new hybrid rescue allele in Drosophila melanogaster.

Barbash DA, Roote J, Johnson G, Ashburner M.

Genetica. 2004 Mar;120(1-3):261-6.


A rapidly evolving MYB-related protein causes species isolation in Drosophila.

Barbash DA, Siino DF, Tarone AM, Roote J.

Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5302-7. Epub 2003 Apr 14.

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