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Items: 30

1.

Draft Genome Sequence of Anoxybacillus sp. Strain UARK-01, a New Thermophilic Lignin-Utilizing Bacterium Isolated from Soil in Arkansas, USA.

Alkahem Albalawi TH, Rhoads DD, Barabote RD.

Genome Announc. 2017 Jul 27;5(30). pii: e00588-17. doi: 10.1128/genomeA.00588-17.

2.

Anoxybacillus sp. Strain UARK-01, a New Thermophilic Soil Bacterium with Hyperthermostable Alkaline Laccase Activity.

Al-Kahem Al-Balawi TH, Wood AL, Solis A, Cooper T, Barabote RD.

Curr Microbiol. 2017 Jun;74(6):762-771. doi: 10.1007/s00284-017-1239-5. Epub 2017 Apr 8.

PMID:
28389772
3.

Complete genome sequence of Arthrobacter sp. strain FB24.

Nakatsu CH, Barabote R, Thompson S, Bruce D, Detter C, Brettin T, Han C, Beasley F, Chen W, Konopka A, Xie G.

Stand Genomic Sci. 2013 Sep 30;9(1):106-16. doi: 10.4056/sigs.4438185. eCollection 2013 Oct 16.

4.

Xenobiotic efflux in bacteria and fungi: a genomics update.

Barabote RD, Thekkiniath J, Strauss RE, Vediyappan G, Fralick JA, San Francisco MJ.

Adv Enzymol Relat Areas Mol Biol. 2011;77:237-306. Review. No abstract available.

5.

Effects of phenolic monomers on growth of Acidothermus cellulolyticus.

Joh LD, Rezaei F, Barabote RD, Parales JV, Parales RE, Berry AM, Vandergheynst JS.

Biotechnol Prog. 2011 Jan-Feb;27(1):23-31. doi: 10.1002/btpr.525. Epub 2010 Dec 22.

PMID:
21312351
6.

Xyn10A, a thermostable endoxylanase from Acidothermus cellulolyticus 11B.

Barabote RD, Parales JV, Guo YY, Labavitch JM, Parales RE, Berry AM.

Appl Environ Microbiol. 2010 Nov;76(21):7363-6. doi: 10.1128/AEM.01326-10. Epub 2010 Sep 17.

7.

Large direct repeats flank genomic rearrangements between a new clinical isolate of Francisella tularensis subsp. tularensis A1 and Schu S4.

Nalbantoglu U, Sayood K, Dempsey MP, Iwen PC, Francesconi SC, Barabote RD, Xie G, Brettin TS, Hinrichs SH, Fey PD.

PLoS One. 2010 Feb 3;5(2):e9007. doi: 10.1371/journal.pone.0009007.

8.

Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00.

Barabote RD, Xie G, Brettin TS, Hinrichs SH, Fey PD, Jay JJ, Engle JL, Godbole SD, Noronha JM, Scheuermann RH, Zhou LW, Lion C, Dempsey MP.

PLoS One. 2009 Sep 16;4(9):e7041. doi: 10.1371/journal.pone.0007041.

9.

Comprehensive analyses of transport proteins encoded within the genome of "Aromatoleum aromaticum" strain EbN1.

Tamang DG, Rabus R, Barabote RD, Saier MH Jr.

J Membr Biol. 2009 May;229(2):53-90. doi: 10.1007/s00232-009-9168-2. Epub 2009 Jun 9.

PMID:
19506936
10.

Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations.

Barabote RD, Xie G, Leu DH, Normand P, Necsulea A, Daubin V, Médigue C, Adney WS, Xu XC, Lapidus A, Parales RE, Detter C, Pujic P, Bruce D, Lavire C, Challacombe JF, Brettin TS, Berry AM.

Genome Res. 2009 Jun;19(6):1033-43. doi: 10.1101/gr.084848.108. Epub 2009 Mar 6.

11.

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, Creasy T, Daugherty SC, Davidsen TM, DeBoy RT, Detter JC, Dodson RJ, Durkin AS, Ganapathy A, Gwinn-Giglio M, Han CS, Khouri H, Kiss H, Kothari SP, Madupu R, Nelson KE, Nelson WC, Paulsen I, Penn K, Ren Q, Rosovitz MJ, Selengut JD, Shrivastava S, Sullivan SA, Tapia R, Thompson LS, Watkins KL, Yang Q, Yu C, Zafar N, Zhou L, Kuske CR.

Appl Environ Microbiol. 2009 Apr;75(7):2046-56. doi: 10.1128/AEM.02294-08. Epub 2009 Feb 5.

12.

The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

Pierce E, Xie G, Barabote RD, Saunders E, Han CS, Detter JC, Richardson P, Brettin TS, Das A, Ljungdahl LG, Ragsdale SW.

Environ Microbiol. 2008 Oct;10(10):2550-73. doi: 10.1111/j.1462-2920.2008.01679.x. Epub 2008 Jun 9.

13.

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).

Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, Schoch CL, Yao J, Barabote R, Nelson MA, Detter C, Bruce D, Kuske CR, Xie G, Richardson P, Rokhsar DS, Lucas SM, Rubin EM, Dunn-Coleman N, Ward M, Brettin TS.

Nat Biotechnol. 2008 May;26(5):553-60. doi: 10.1038/nbt1403. Epub 2008 May 4. Erratum in: Nat Biotechnol. 2008 Oct;26(10):1193.. Barbote, Ravi [corrected to Barabote, Ravi].

PMID:
18454138
14.

Comprehensive analysis of transport proteins encoded within the genome of Bdellovibrio bacteriovorus.

Barabote RD, Rendulic S, Schuster SC, Saier MH Jr.

Genomics. 2007 Oct;90(4):424-46. Epub 2007 Aug 15. Review.

15.

Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses.

Lorca GL, Barabote RD, Zlotopolski V, Tran C, Winnen B, Hvorup RN, Stonestrom AJ, Nguyen E, Huang LW, Kim DS, Saier MH Jr.

Biochim Biophys Acta. 2007 Jun;1768(6):1342-66. Epub 2007 Feb 17. Review.

16.

Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids.

Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PR, Toth IK, Payton P, San Francisco MJ.

Mol Plant Microbe Interact. 2007 Mar;20(3):313-20.

17.

Topological predictions for integral membrane permeases of the phosphoenolpyruvate:sugar phosphotransferase system.

Nguyen TX, Yen MR, Barabote RD, Saier MH Jr.

J Mol Microbiol Biotechnol. 2006;11(6):345-60. Review.

PMID:
17114898
18.

Comparative genomics of the lactic acid bacteria.

Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D.

Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15611-6. Epub 2006 Oct 9.

19.

Extra domains in secondary transport carriers and channel proteins.

Barabote RD, Tamang DG, Abeywardena SN, Fallah NS, Fu JY, Lio JK, Mirhosseini P, Pezeshk R, Podell S, Salampessy ML, Thever MD, Saier MH Jr.

Biochim Biophys Acta. 2006 Oct;1758(10):1557-79. Epub 2006 Jun 27. Review.

20.

The iron/lead transporter superfamily of Fe/Pb2+ uptake systems.

Debut AJ, Dumay QC, Barabote RD, Saier MH Jr.

J Mol Microbiol Biotechnol. 2006;11(1-2):1-9. Review.

PMID:
16825785
21.

Evolutionary appearance of H+-translocating pyrophosphatases.

Au KM, Barabote RD, Hu KY, Saier MH Jr.

Microbiology. 2006 May;152(Pt 5):1243-7. No abstract available.

PMID:
16622041
22.

TCDB: the Transporter Classification Database for membrane transport protein analyses and information.

Saier MH Jr, Tran CV, Barabote RD.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D181-6.

23.

Comparative genomic analyses of the bacterial phosphotransferase system.

Barabote RD, Saier MH Jr.

Microbiol Mol Biol Rev. 2005 Dec;69(4):608-34. Review.

24.

Catabolite repression and activation in Bacillus subtilis: dependency on CcpA, HPr, and HprK.

Lorca GL, Chung YJ, Barabote RD, Weyler W, Schilling CH, Saier MH Jr.

J Bacteriol. 2005 Nov;187(22):7826-39.

25.

The bestrophin family of anion channels: identification of prokaryotic homologues.

Hagen AR, Barabote RD, Saier MH.

Mol Membr Biol. 2005 Jul-Aug;22(4):291-302.

PMID:
16154901
26.

Bioinformatic analyses of bacterial HPr kinase/phosphorylase homologues.

Stonestrom A, Barabote RD, Gonzalez CF, Saier MH Jr.

Res Microbiol. 2005 Apr;156(3):443-51. Epub 2005 Jan 28.

PMID:
15808949
27.

Evolution of the bacterial phosphotransferase system: from carriers and enzymes to group translocators.

Saier MH, Hvorup RN, Barabote RD.

Biochem Soc Trans. 2005 Feb;33(Pt 1):220-4.

PMID:
15667312
28.

Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli.

Zhang Z, Gosset G, Barabote R, Gonzalez CS, Cuevas WA, Saier MH Jr.

J Bacteriol. 2005 Feb;187(3):980-90.

29.

Erwinia chrysanthemi tolC is involved in resistance to antimicrobial plant chemicals and is essential for phytopathogenesis.

Barabote RD, Johnson OL, Zetina E, San Francisco SK, Fralick JA, San Francisco MJ.

J Bacteriol. 2003 Oct;185(19):5772-8.

30.

Erwinia chrysanthemi strains cause death of human gastrointestinal cells in culture and express an intimin-like protein.

Duarté X, Anderson CT, Grimson M, Barabote RD, Strauss RE, Gollahon LS, San Francisco MJ.

FEMS Microbiol Lett. 2000 Sep 1;190(1):81-6.

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