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Items: 25

1.

Charge-based separation of proteins and peptides by electrically induced dynamic pH profiles.

Brod E, S Ben-Yosef V, Bandhakavi S, Sivan U.

J Chromatogr A. 2016 Jan 29;1431:166-175. doi: 10.1016/j.chroma.2015.12.070. Epub 2015 Dec 30.

PMID:
26768404
2.

2-D Western blotting for evaluation of antibodies developed for detection of host cell protein.

Berkelman T, Harbers A, Bandhakavi S.

Methods Mol Biol. 2015;1295:393-414. doi: 10.1007/978-1-4939-2550-6_28.

PMID:
25820736
3.

In-gel peptide IEF sample preparation for LC/MS analysis.

Berkelman T, Bandhakavi S, Paulus A.

Methods Mol Biol. 2015;1295:369-79. doi: 10.1007/978-1-4939-2550-6_26.

PMID:
25820734
4.

Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework.

Jagtap PD, Johnson JE, Onsongo G, Sadler FW, Murray K, Wang Y, Shenykman GM, Bandhakavi S, Smith LM, Griffin TJ.

J Proteome Res. 2014 Dec 5;13(12):5898-908. doi: 10.1021/pr500812t. Epub 2014 Oct 23.

5.

Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.

Jagtap P, Bandhakavi S, Higgins L, McGowan T, Sa R, Stone MD, Chilton J, Arriaga EA, Seymour SL, Griffin TJ.

Proteomics. 2012 Jun;12(11):1726-30. doi: 10.1002/pmic.201100097.

6.

Deep metaproteomic analysis of human salivary supernatant.

Jagtap P, McGowan T, Bandhakavi S, Tu ZJ, Seymour S, Griffin TJ, Rudney JD.

Proteomics. 2012 Apr;12(7):992-1001. doi: 10.1002/pmic.201100503.

7.

Three-dimensional peptide fractionation for highly sensitive nanoscale LC-based shotgun proteomic analysis of complex protein mixtures.

Bandhakavi S, Markowski TW, Xie H, Griffin TJ.

Methods Mol Biol. 2011;790:47-56. doi: 10.1007/978-1-61779-319-6_4.

PMID:
21948405
8.

Dynamic range compression: a solution for proteomic biomarker discovery?

Griffin TJ, Bandhakavi S.

Bioanalysis. 2011 Sep;3(18):2053-6. doi: 10.4155/bio.11.206. No abstract available.

PMID:
21942515
9.

Large-scale phosphoproteomics analysis of whole saliva reveals a distinct phosphorylation pattern.

Stone MD, Chen X, McGowan T, Bandhakavi S, Cheng B, Rhodus NL, Griffin TJ.

J Proteome Res. 2011 Apr 1;10(4):1728-36. doi: 10.1021/pr1010247. Epub 2011 Mar 1.

10.

Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.

Bandhakavi S, Van Riper SK, Tawfik PN, Stone MD, Haddad T, Rhodus NL, Carlis JV, Griffin TJ.

J Proteome Res. 2011 Mar 4;10(3):1052-61. doi: 10.1021/pr100857t. Epub 2011 Jan 14.

11.

Novel In Situ Collection of Tumor Interstitial Fluid from a Head and Neck Squamous Carcinoma Reveals a Unique Proteome with Diagnostic Potential.

Stone MD, Odland RM, McGowan T, Onsongo G, Tang C, Rhodus NL, Jagtap P, Bandhakavi S, Griffin TJ.

Clin Proteomics. 2010 Sep;6(3):75-82. Epub 2010 Jul 25.

12.

Quantitative nuclear proteomics identifies mTOR regulation of DNA damage response.

Bandhakavi S, Kim YM, Ro SH, Xie H, Onsongo G, Jun CB, Kim DH, Griffin TJ.

Mol Cell Proteomics. 2010 Feb;9(2):403-14. doi: 10.1074/mcp.M900326-MCP200. Epub 2009 Nov 23.

13.

A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva.

Bandhakavi S, Stone MD, Onsongo G, Van Riper SK, Griffin TJ.

J Proteome Res. 2009 Dec;8(12):5590-600. doi: 10.1021/pr900675w.

14.

Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis.

Bandhakavi S, Xie H, O'Callaghan B, Sakurai H, Kim DH, Griffin TJ.

PLoS One. 2008 Feb 13;3(2):e1598. doi: 10.1371/journal.pone.0001598.

15.

iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer.

Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L.

J Proteome Res. 2007 Nov;6(11):4200-9. Epub 2007 Sep 29.

16.

Advancing mammalian cell culture engineering using genome-scale technologies.

Griffin TJ, Seth G, Xie H, Bandhakavi S, Hu WS.

Trends Biotechnol. 2007 Sep;25(9):401-8. Epub 2007 Aug 2. Review.

PMID:
17681628
17.

PRR5, a novel component of mTOR complex 2, regulates platelet-derived growth factor receptor beta expression and signaling.

Woo SY, Kim DH, Jun CB, Kim YM, Haar EV, Lee SI, Hegg JW, Bandhakavi S, Griffin TJ, Kim DH.

J Biol Chem. 2007 Aug 31;282(35):25604-12. Epub 2007 Jun 28.

18.

Proteomic mapping of 4-hydroxynonenal protein modification sites by solid-phase hydrazide chemistry and mass spectrometry.

Roe MR, Xie H, Bandhakavi S, Griffin TJ.

Anal Chem. 2007 May 15;79(10):3747-56. Epub 2007 Apr 17.

PMID:
17437329
19.

Preparative peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures.

Xie H, Bandhakavi S, Roe MR, Griffin TJ.

J Proteome Res. 2007 May;6(5):2019-26. Epub 2007 Mar 31.

PMID:
17397211
20.

Insulin signalling to mTOR mediated by the Akt/PKB substrate PRAS40.

Vander Haar E, Lee SI, Bandhakavi S, Griffin TJ, Kim DH.

Nat Cell Biol. 2007 Mar;9(3):316-23. Epub 2007 Feb 4.

PMID:
17277771
21.

A global view of CK2 function and regulation.

Poole A, Poore T, Bandhakavi S, McCann RO, Hanna DE, Glover CV.

Mol Cell Biochem. 2005 Jun;274(1-2):163-70.

PMID:
16342414
23.

Caenorhabditis elegans OSR-1 regulates behavioral and physiological responses to hyperosmotic environments.

Solomon A, Bandhakavi S, Jabbar S, Shah R, Beitel GJ, Morimoto RI.

Genetics. 2004 May;167(1):161-70.

24.

Genetic interactions among ZDS1,2, CDC37, and protein kinase CK2 in Saccharomyces cerevisiae.

Bandhakavi S, McCann RO, Hanna DE, Glover CV.

FEBS Lett. 2003 Nov 20;554(3):295-300.

25.

A positive feedback loop between protein kinase CKII and Cdc37 promotes the activity of multiple protein kinases.

Bandhakavi S, McCann RO, Hanna DE, Glover CV.

J Biol Chem. 2003 Jan 31;278(5):2829-36. Epub 2002 Nov 14.

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