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Items: 1 to 50 of 93

1.

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.

Weissensteiner H, Pacher D, Kloss-Brandstätter A, Forer L, Specht G, Bandelt HJ, Kronenberg F, Salas A, Schönherr S.

Nucleic Acids Res. 2016 Jul 8;44(W1):W58-63. doi: 10.1093/nar/gkw233. Epub 2016 Apr 15.

2.

The saga of the many studies wrongly associating mitochondrial DNA with breast cancer.

Salas A, García-Magariños M, Logan I, Bandelt HJ.

BMC Cancer. 2014 Sep 9;14:659. doi: 10.1186/1471-2407-14-659.

3.

The case for the continuing use of the revised Cambridge Reference Sequence (rCRS) and the standardization of notation in human mitochondrial DNA studies.

Bandelt HJ, Kloss-Brandstätter A, Richards MB, Yao YG, Logan I.

J Hum Genet. 2014 Feb;59(2):66-77. doi: 10.1038/jhg.2013.120. Epub 2013 Dec 5. Review.

PMID:
24304692
4.

Haplogrouping mitochondrial DNA sequences in Legal Medicine/Forensic Genetics.

Bandelt HJ, van Oven M, Salas A.

Int J Legal Med. 2012 Nov;126(6):901-16. doi: 10.1007/s00414-012-0762-y. Epub 2012 Sep 1.

PMID:
22940763
5.

Rapid coastal spread of First Americans: novel insights from South America's Southern Cone mitochondrial genomes.

Bodner M, Perego UA, Huber G, Fendt L, Röck AW, Zimmermann B, Olivieri A, Gómez-Carballa A, Lancioni H, Angerhofer N, Bobillo MC, Corach D, Woodward SR, Salas A, Achilli A, Torroni A, Bandelt HJ, Parson W.

Genome Res. 2012 May;22(5):811-20. doi: 10.1101/gr.131722.111. Epub 2012 Feb 14.

6.

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication.

Achilli A, Olivieri A, Soares P, Lancioni H, Hooshiar Kashani B, Perego UA, Nergadze SG, Carossa V, Santagostino M, Capomaccio S, Felicetti M, Al-Achkar W, Penedo MC, Verini-Supplizi A, Houshmand M, Woodward SR, Semino O, Silvestrelli M, Giulotto E, Pereira L, Bandelt HJ, Torroni A.

Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2449-54. doi: 10.1073/pnas.1111637109. Epub 2012 Jan 30.

7.

Is mitochondrial tRNA(phe) variant m.593T>C a synergistically pathogenic mutation in Chinese LHON families with m.11778G>A?

Zhang AM, Bandelt HJ, Jia X, Zhang W, Li S, Yu D, Wang D, Zhuang XY, Zhang Q, Yao YG.

PLoS One. 2011;6(10):e26511. doi: 10.1371/journal.pone.0026511. Epub 2011 Oct 19.

8.

Current next generation sequencing technology may not meet forensic standards.

Bandelt HJ, Salas A.

Forensic Sci Int Genet. 2012 Jan;6(1):143-5. doi: 10.1016/j.fsigen.2011.04.004. Epub 2011 May 11.

PMID:
21565569
9.

The archaeogenetics of Europe.

Soares P, Achilli A, Semino O, Davies W, Macaulay V, Bandelt HJ, Torroni A, Richards MB.

Curr Biol. 2010 Feb 23;20(4):R174-83. doi: 10.1016/j.cub.2009.11.054. Review.

10.

mtDNA data mining in GenBank needs surveying.

Yao YG, Salas A, Logan I, Bandelt HJ.

Am J Hum Genet. 2009 Dec;85(6):929-33; author reply 933. doi: 10.1016/j.ajhg.2009.10.023. No abstract available.

11.

Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan Plateau.

Zhao M, Kong QP, Wang HW, Peng MS, Xie XD, Wang WZ, Jiayang, Duan JG, Cai MC, Zhao SN, Cidanpingcuo, Tu YQ, Wu SF, Yao YG, Bandelt HJ, Zhang YP.

Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21230-5. doi: 10.1073/pnas.0907844106. Epub 2009 Dec 2.

12.

High mitochondrial DNA stability in B-cell chronic lymphocytic leukemia.

Cerezo M, Bandelt HJ, Martín-Guerrero I, Ardanaz M, Vega A, Carracedo A, García-Orad A, Salas A.

PLoS One. 2009 Nov 18;4(11):e7902. doi: 10.1371/journal.pone.0007902.

13.

Amerindian mitochondrial DNA haplogroups predominate in the population of Argentina: towards a first nationwide forensic mitochondrial DNA sequence database.

Bobillo MC, Zimmermann B, Sala A, Huber G, Röck A, Bandelt HJ, Corach D, Parson W.

Int J Legal Med. 2010 Jul;124(4):263-8. doi: 10.1007/s00414-009-0366-3. Epub 2009 Aug 13.

PMID:
19680675
14.

Mitochondrial haplogroup U5b3: a distant echo of the epipaleolithic in Italy and the legacy of the early Sardinians.

Pala M, Achilli A, Olivieri A, Hooshiar Kashani B, Perego UA, Sanna D, Metspalu E, Tambets K, Tamm E, Accetturo M, Carossa V, Lancioni H, Panara F, Zimmermann B, Huber G, Al-Zahery N, Brisighelli F, Woodward SR, Francalacci P, Parson W, Salas A, Behar DM, Villems R, Semino O, Bandelt HJ, Torroni A.

Am J Hum Genet. 2009 Jun;84(6):814-21. doi: 10.1016/j.ajhg.2009.05.004. Epub 2009 Jun 4.

15.

The multifaceted origin of taurine cattle reflected by the mitochondrial genome.

Achilli A, Bonfiglio S, Olivieri A, Malusà A, Pala M, Hooshiar Kashani B, Perego UA, Ajmone-Marsan P, Liotta L, Semino O, Bandelt HJ, Ferretti L, Torroni A.

PLoS One. 2009 Jun 1;4(6):e5753. doi: 10.1371/journal.pone.0005753.

16.
17.

Median network analysis of defectively sequenced entire mitochondrial genomes from early and contemporary disease studies.

Bandelt HJ, Yao YG, Bravi CM, Salas A, Kivisild T.

J Hum Genet. 2009 Mar;54(3):174-81. doi: 10.1038/jhg.2009.9. Epub 2009 Mar 13.

PMID:
19322152
18.

Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups.

Perego UA, Achilli A, Angerhofer N, Accetturo M, Pala M, Olivieri A, Hooshiar Kashani B, Ritchie KH, Scozzari R, Kong QP, Myres NM, Salas A, Semino O, Bandelt HJ, Woodward SR, Torroni A.

Curr Biol. 2009 Jan 13;19(1):1-8. doi: 10.1016/j.cub.2008.11.058.

19.

Mitochondrial DNA haplogroups M7b1'2 and M8a affect clinical expression of leber hereditary optic neuropathy in Chinese families with the m.11778G-->a mutation.

Ji Y, Zhang AM, Jia X, Zhang YP, Xiao X, Li S, Guo X, Bandelt HJ, Zhang Q, Yao YG.

Am J Hum Genet. 2008 Dec;83(6):760-8. doi: 10.1016/j.ajhg.2008.11.002. Epub 2008 Nov 20.

20.

The brave new era of human genetic testing.

Bandelt HJ, Yao YG, Richards MB, Salas A.

Bioessays. 2008 Nov;30(11-12):1246-51. doi: 10.1002/bies.20837.

PMID:
18937378
21.

Exaggerated status of "novel" and "pathogenic" mtDNA sequence variants due to inadequate database searches.

Bandelt HJ, Salas A, Taylor RW, Yao YG.

Hum Mutat. 2009 Feb;30(2):191-6. doi: 10.1002/humu.20846.

PMID:
18800376
22.

Distilling artificial recombinants from large sets of complete mtDNA genomes.

Kong QP, Salas A, Sun C, Fuku N, Tanaka M, Zhong L, Wang CY, Yao YG, Bandelt HJ.

PLoS One. 2008 Aug 20;3(8):e3016. doi: 10.1371/journal.pone.0003016.

23.

Perfectly misleading distances from ternary characters.

Bandelt HJ, Fischer M.

Syst Biol. 2008 Aug;57(4):540-3. doi: 10.1080/10635150802203880.

PMID:
18629738
24.

Pseudomitochondrial genome haunts disease studies.

Yao YG, Kong QP, Salas A, Bandelt HJ.

J Med Genet. 2008 Dec;45(12):769-72. doi: 10.1136/jmg.2008.059782. Epub 2008 Jul 8. Review.

PMID:
18611982
25.

The phylogeny of the four pan-American MtDNA haplogroups: implications for evolutionary and disease studies.

Achilli A, Perego UA, Bravi CM, Coble MD, Kong QP, Woodward SR, Salas A, Torroni A, Bandelt HJ.

PLoS One. 2008 Mar 12;3(3):e1764. doi: 10.1371/journal.pone.0001764.

26.

Mitochondrial genomes of extinct aurochs survive in domestic cattle.

Achilli A, Olivieri A, Pellecchia M, Uboldi C, Colli L, Al-Zahery N, Accetturo M, Pala M, Hooshiar Kashani B, Perego UA, Battaglia V, Fornarino S, Kalamati J, Houshmand M, Negrini R, Semino O, Richards M, Macaulay V, Ferretti L, Bandelt HJ, Ajmone-Marsan P, Torroni A.

Curr Biol. 2008 Feb 26;18(4):R157-8. doi: 10.1016/j.cub.2008.01.019. No abstract available.

27.

Clock debate: when times are a-changin': time dependency of molecular rate estimates: tempest in a teacup.

Bandelt HJ.

Heredity (Edinb). 2008 Jan;100(1):1-2. Epub 2007 Oct 17. No abstract available.

28.

Misanalysis gave false association of mtDNA mutations with infertility.

Bandelt HJ.

Int J Androl. 2008 Aug;31(4):450-3. No abstract available.

PMID:
17916186
29.

External contamination in single cell mtDNA analysis.

Yao YG, Bandelt HJ, Young NS.

PLoS One. 2007 Aug 1;2(8):e681.

30.

Mutation C11994T in the mitochondrial ND4 gene is not a cause of low sperm motility in Portugal.

Pereira L, Gonçalves J, Bandelt HJ.

Fertil Steril. 2008 Mar;89(3):738-41. Epub 2007 May 22.

PMID:
17517394
31.

The search of 'novel' mtDNA mutations in hypertrophic cardiomyopathy: MITOMAPping as a risk factor.

Bandelt HJ, Yao YG, Salas A.

Int J Cardiol. 2008 Jun 6;126(3):439-42. Epub 2007 May 7.

PMID:
17482693
32.

Mitochondrial DNA variation of modern Tuscans supports the near eastern origin of Etruscans.

Achilli A, Olivieri A, Pala M, Metspalu E, Fornarino S, Battaglia V, Accetturo M, Kutuev I, Khusnutdinova E, Pennarun E, Cerutti N, Di Gaetano C, Crobu F, Palli D, Matullo G, Santachiara-Benerecetti AS, Cavalli-Sforza LL, Semino O, Villems R, Bandelt HJ, Piazza A, Torroni A.

Am J Hum Genet. 2007 Apr;80(4):759-68. Epub 2007 Feb 6.

33.

Consistent treatment of length variants in the human mtDNA control region: a reappraisal.

Bandelt HJ, Parson W.

Int J Legal Med. 2008 Jan;122(1):11-21. Epub 2007 Mar 9.

PMID:
17347766
34.

Extended guidelines for mtDNA typing of population data in forensic science.

Parson W, Bandelt HJ.

Forensic Sci Int Genet. 2007 Mar;1(1):13-9. doi: 10.1016/j.fsigen.2006.11.003. Epub 2006 Dec 19.

PMID:
19083723
35.

'Distorted' mitochondrial DNA sequences in schizophrenic patients.

Bandelt HJ, Olivieri A, Bravi C, Yao YG, Torroni A, Salas A.

Eur J Hum Genet. 2007 Apr;15(4):400-2; author reply 402-4. Epub 2007 Jan 31. No abstract available.

36.

The mtDNA legacy of the Levantine early Upper Palaeolithic in Africa.

Olivieri A, Achilli A, Pala M, Battaglia V, Fornarino S, Al-Zahery N, Scozzari R, Cruciani F, Behar DM, Dugoujon JM, Coudray C, Santachiara-Benerecetti AS, Semino O, Bandelt HJ, Torroni A.

Science. 2006 Dec 15;314(5806):1767-70.

37.

High penetrance of sequencing errors and interpretative shortcomings in mtDNA sequence analysis of LHON patients.

Bandelt HJ, Yao YG, Salas A, Kivisild T, Bravi CM.

Biochem Biophys Res Commun. 2007 Jan 12;352(2):283-91. Epub 2006 Nov 3.

PMID:
17123466
38.

What is a 'novel' mtDNA mutation--and does 'novelty' really matter?

Bandelt HJ, Salas A, Bravi CM.

J Hum Genet. 2006;51(12):1073-82. Epub 2006 Oct 5.

PMID:
17021933
39.

Translating DNA data tables into quasi-median networks for parsimony analysis and error detection.

Bandelt HJ, Dür A.

Mol Phylogenet Evol. 2007 Jan;42(1):256-71. Epub 2006 Jul 26.

PMID:
16945554
40.

Phylogeographic investigations: the role of trees in forensic genetics.

Salas A, Bandelt HJ, Macaulay V, Richards MB.

Forensic Sci Int. 2007 May 3;168(1):1-13. Epub 2006 Jun 30. Review.

PMID:
16814504
41.

Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations.

Kong QP, Bandelt HJ, Sun C, Yao YG, Salas A, Achilli A, Wang CY, Zhong L, Zhu CL, Wu SF, Torroni A, Zhang YP.

Hum Mol Genet. 2006 Jul 1;15(13):2076-86. Epub 2006 May 19.

PMID:
16714301
42.

Assessing ancient DNA studies.

Gilbert MT, Bandelt HJ, Hofreiter M, Barnes I.

Trends Ecol Evol. 2005 Oct;20(10):541-4. Epub 2005 Jul 21.

PMID:
16701432
43.

Harvesting the fruit of the human mtDNA tree.

Torroni A, Achilli A, Macaulay V, Richards M, Bandelt HJ.

Trends Genet. 2006 Jun;22(6):339-45. Epub 2006 May 4. Review.

PMID:
16678300
44.
45.

A reappraisal of complete mtDNA variation in East Asian families with hearing impairment.

Yao YG, Salas A, Bravi CM, Bandelt HJ.

Hum Genet. 2006 Jun;119(5):505-15. Epub 2006 Mar 10.

PMID:
16528519
46.

The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes.

Sun C, Kong QP, Palanichamy MG, Agrawal S, Bandelt HJ, Yao YG, Khan F, Zhu CL, Chaudhuri TK, Zhang YP.

Mol Biol Evol. 2006 Mar;23(3):683-90. Epub 2005 Dec 16.

PMID:
16361303
47.

A critical reassessment of the role of mitochondria in tumorigenesis.

Salas A, Yao YG, Macaulay V, Vega A, Carracedo A, Bandelt HJ.

PLoS Med. 2005 Nov;2(11):e296. Epub 2005 Oct 4.

48.

Phantom mutation hotspots in human mitochondrial DNA.

Brandstätter A, Sänger T, Lutz-Bonengel S, Parson W, Béraud-Colomb E, Wen B, Kong QP, Bravi CM, Bandelt HJ.

Electrophoresis. 2005 Sep;26(18):3414-29.

PMID:
16167362
49.

A practical guide to mitochondrial DNA error prevention in clinical, forensic, and population genetics.

Salas A, Carracedo A, Macaulay V, Richards M, Bandelt HJ.

Biochem Biophys Res Commun. 2005 Sep 30;335(3):891-9.

PMID:
16102729
50.

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