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Items: 1 to 50 of 102

1.

Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica.

Ferreira de Carvalho J, Lucas J, Deniot G, Falentin C, Filangi O, Gilet M, Legeai F, Lode M, Morice J, Trotoux G, Aury JM, Barbe V, Keller J, Snowdon R, He Z, Denoeud F, Wincker P, Bancroft I, Chèvre AM, Rousseau-Gueutin M.

Plant J. 2019 Jan 3. doi: 10.1111/tpj.14228. [Epub ahead of print]

PMID:
30604905
2.

Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation in Brassica napus L.

Alcock TD, Havlickova L, He Z, Wilson L, Bancroft I, White PJ, Broadley MR, Graham NS.

Front Plant Sci. 2018 Oct 16;9:1487. doi: 10.3389/fpls.2018.01487. eCollection 2018.

3.

Organization of the genome sequence of the polyploid crop species Brassica juncea.

He Z, Bancroft I.

Nat Genet. 2018 Nov;50(11):1496-1497. doi: 10.1038/s41588-018-0239-0. No abstract available.

PMID:
30250124
4.

Dissecting the complex regulation of lodging resistance in Brassica napus.

Miller CN, Harper AL, Trick M, Wellner N, Werner P, Waldron KW, Bancroft I.

Mol Breed. 2018;38(3):30. doi: 10.1007/s11032-018-0781-6. Epub 2018 Feb 21.

5.

Identification of Candidate Genes for Calcium and Magnesium Accumulation in Brassica napus L. by Association Genetics.

Alcock TD, Havlickova L, He Z, Bancroft I, White PJ, Broadley MR, Graham NS.

Front Plant Sci. 2017 Nov 15;8:1968. doi: 10.3389/fpls.2017.01968. eCollection 2017.

6.

Validation of an updated Associative Transcriptomics platform for the polyploid crop species Brassica napus by dissection of the genetic architecture of erucic acid and tocopherol isoform variation in seeds.

Havlickova L, He Z, Wang L, Langer S, Harper AL, Kaur H, Broadley MR, Gegas V, Bancroft I.

Plant J. 2018 Jan;93(1):181-192. doi: 10.1111/tpj.13767. Epub 2017 Dec 2.

7.

Variation across a wheat genetic diversity panel for saccharification of hydrothermally pretreated straw.

Collins SRA, Wilson DR, Moates GK, Harper AL, Bancroft I, Waldron KW.

Biotechnol Biofuels. 2017 Oct 2;10:227. doi: 10.1186/s13068-017-0914-x. eCollection 2017.

8.

Carbohydrate microarrays and their use for the identification of molecular markers for plant cell wall composition.

Wood IP, Pearson BM, Garcia-Gutierrez E, Havlickova L, He Z, Harper AL, Bancroft I, Waldron KW.

Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):6860-6865. doi: 10.1073/pnas.1619033114. Epub 2017 Jun 12.

9.

Assembly and comparison of two closely related Brassica napus genomes.

Bayer PE, Hurgobin B, Golicz AA, Chan CK, Yuan Y, Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King GJ, Batley J, Edwards D.

Plant Biotechnol J. 2017 Dec;15(12):1602-1610. doi: 10.1111/pbi.12742. Epub 2017 Jun 14.

10.

Development of an efficient glucosinolate extraction method.

Doheny-Adams T, Redeker K, Kittipol V, Bancroft I, Hartley SE.

Plant Methods. 2017 Mar 21;13:17. doi: 10.1186/s13007-017-0164-8. eCollection 2017.

11.

Genome sequence and genetic diversity of European ash trees.

Sollars ES, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, Worswick G, Studholme DJ, Zohren J, Salmon DL, Clavijo BJ, Li Y, He Z, Fellgett A, McKinney LV, Nielsen LR, Douglas GC, Kjær ED, Downie JA, Boshier D, Lee S, Clark J, Grant M, Bancroft I, Caccamo M, Buggs RJ.

Nature. 2017 Jan 12;541(7636):212-216. doi: 10.1038/nature20786. Epub 2016 Dec 26.

PMID:
28024298
12.

Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNAseq-based visualization.

He Z, Wang L, Harper AL, Havlickova L, Pradhan AK, Parkin IAP, Bancroft I.

Plant Biotechnol J. 2017 May;15(5):594-604. doi: 10.1111/pbi.12657. Epub 2016 Dec 6.

13.

Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit.

Thomas CL, Alcock TD, Graham NS, Hayden R, Matterson S, Wilson L, Young SD, Dupuy LX, White PJ, Hammond JP, Danku JM, Salt DE, Sweeney A, Bancroft I, Broadley MR.

BMC Plant Biol. 2016 Oct 4;16(1):214.

14.

Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics.

Miller CN, Harper AL, Trick M, Werner P, Waldron K, Bancroft I.

BMC Genomics. 2016 Jul 16;17:500. doi: 10.1186/s12864-016-2775-2.

15.

Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics.

Harper AL, McKinney LV, Nielsen LR, Havlickova L, Li Y, Trick M, Fraser F, Wang L, Fellgett A, Sollars ES, Janacek SH, Downie JA, Buggs RJ, Kjær ED, Bancroft I.

Sci Rep. 2016 Jan 13;6:19335. doi: 10.1038/srep19335.

16.

Genome distribution of differential homoeologue contributions to leaf gene expression in bread wheat.

Harper AL, Trick M, He Z, Clissold L, Fellgett A, Griffiths S, Bancroft I.

Plant Biotechnol J. 2016 May;14(5):1207-14. doi: 10.1111/pbi.12486. Epub 2015 Oct 7.

17.

Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus.

Shen E, Zou J, Hubertus Behrens F, Chen L, Ye C, Dai S, Li R, Ni M, Jiang X, Qiu J, Liu Y, Wang W, Zhu QH, Chalhoub B, Bancroft I, Meng J, Cai D, Fan L.

J Exp Bot. 2015 Dec;66(22):7241-53. doi: 10.1093/jxb/erv420. Epub 2015 Sep 10.

18.

Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research.

He Z, Cheng F, Li Y, Wang X, Parkin IA, Chalhoub B, Liu S, Bancroft I.

Data Brief. 2015 Jul 2;4:357-62. doi: 10.1016/j.dib.2015.06.016. eCollection 2015 Sep.

19.

Collinearity analysis of Brassica A and C genomes based on an updated inferred unigene order.

Bancroft I, Fraser F, Morgan C, Trick M.

Data Brief. 2015 Feb 10;3:51-5. doi: 10.1016/j.dib.2015.01.004. eCollection 2015 Jun.

20.

Effect of Brassica napus cultivar on cellulosic ethanol yield.

Wood IP, Wellner N, Elliston A, Wilson DR, Bancroft I, Waldron KW.

Biotechnol Biofuels. 2015 Jul 11;8:99. doi: 10.1186/s13068-015-0278-z. eCollection 2015.

21.

Seedling development traits in Brassica napus examined by gene expression analysis and association mapping.

Körber N, Bus A, Li J, Higgins J, Bancroft I, Higgins EE, Parkin IA, Salazar-Colqui B, Snowdon RJ, Stich B.

BMC Plant Biol. 2015 Jun 9;15:136. doi: 10.1186/s12870-015-0496-3.

22.

Identification of a gene controlling variation in the salt tolerance of rapeseed (Brassica napus L.).

Yong HY, Wang C, Bancroft I, Li F, Wu X, Kitashiba H, Nishio T.

Planta. 2015 Jul;242(1):313-26. doi: 10.1007/s00425-015-2310-8. Epub 2015 Apr 29.

PMID:
25921693
23.

Variation in the chemical composition of wheat straw: the role of tissue ratio and composition.

Collins SR, Wellner N, Martinez Bordonado I, Harper AL, Miller CN, Bancroft I, Waldron KW.

Biotechnol Biofuels. 2014 Aug 20;7(1):121. doi: 10.1186/s13068-014-0121-y. eCollection 2014.

24.

A novel and fast approach for population structure inference using kernel-PCA and optimization.

Popescu AA, Harper AL, Trick M, Bancroft I, Huber KT.

Genetics. 2014 Dec;198(4):1421-31. doi: 10.1534/genetics.114.171314. Epub 2014 Oct 16.

25.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

26.

Dissection of the control of anion homeostasis by associative transcriptomics in Brassica napus.

Koprivova A, Harper AL, Trick M, Bancroft I, Kopriva S.

Plant Physiol. 2014 Sep;166(1):442-50. doi: 10.1104/pp.114.239947. Epub 2014 Jul 21.

27.

Associative transcriptomics study dissects the genetic architecture of seed glucosinolate content in Brassica napus.

Lu G, Harper AL, Trick M, Morgan C, Fraser F, O'Neill C, Bancroft I.

DNA Res. 2014 Dec;21(6):613-25. doi: 10.1093/dnares/dsu024. Epub 2014 Jul 15.

28.

Genome-wide investigation of genetic changes during modern breeding of Brassica napus.

Wang N, Li F, Chen B, Xu K, Yan G, Qiao J, Li J, Gao G, Bancroft I, Meng J, King GJ, Wu X.

Theor Appl Genet. 2014 Aug;127(8):1817-29. doi: 10.1007/s00122-014-2343-6. Epub 2014 Jun 20.

PMID:
24947439
29.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

30.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

31.

Steam explosion of oilseed rape straw: establishing key determinants of saccharification efficiency.

Wood IP, Elliston A, Collins SR, Wilson D, Bancroft I, Waldron KW.

Bioresour Technol. 2014 Jun;162:175-83. doi: 10.1016/j.biortech.2014.03.115. Epub 2014 Mar 31.

PMID:
24747672
32.

Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.).

Li F, Chen B, Xu K, Wu J, Song W, Bancroft I, Harper AL, Trick M, Liu S, Gao G, Wang N, Yan G, Qiao J, Li J, Li H, Xiao X, Zhang T, Wu X.

DNA Res. 2014 Aug;21(4):355-67. doi: 10.1093/dnares/dsu002. Epub 2014 Feb 7.

33.

The control of seed oil polyunsaturate content in the polyploid crop species Brassica napus.

Wells R, Trick M, Soumpourou E, Clissold L, Morgan C, Werner P, Gibbard C, Clarke M, Jennaway R, Bancroft I.

Mol Breed. 2014;33:349-362. Epub 2013 Sep 21.

34.

Sequencing-based variant detection in the polyploid crop oilseed rape.

Wells R, Trick M, Fraser F, Soumpourou E, Clissold L, Morgan C, Pauquet J, Bancroft I.

BMC Plant Biol. 2013 Aug 6;13:111. doi: 10.1186/1471-2229-13-111.

35.

Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea.

Navabi ZK, Huebert T, Sharpe AG, O'Neill CM, Bancroft I, Parkin IA.

BMC Genomics. 2013 Apr 15;14:250. doi: 10.1186/1471-2164-14-250.

36.

Analysis of the bread wheat genome using whole-genome shotgun sequencing.

Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N.

Nature. 2012 Nov 29;491(7426):705-10. doi: 10.1038/nature11650.

37.

Associative transcriptomics of traits in the polyploid crop species Brassica napus.

Harper AL, Trick M, Higgins J, Fraser F, Clissold L, Wells R, Hattori C, Werner P, Bancroft I.

Nat Biotechnol. 2012 Aug;30(8):798-802. No abstract available.

PMID:
22820317
38.

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus.

Higgins J, Magusin A, Trick M, Fraser F, Bancroft I.

BMC Genomics. 2012 Jun 15;13:247. doi: 10.1186/1471-2164-13-247.

39.

The genome of the mesopolyploid crop species Brassica rapa.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium.

Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

PMID:
21873998
40.

Two high linolenic mutants of Arabidopsis thaliana contain megabase-scale genome duplications encompassing the FAD3 locus.

O'Neill CM, Baker D, Bennett G, Clarke J, Bancroft I.

Plant J. 2011 Dec;68(5):912-8. doi: 10.1111/j.1365-313X.2011.04742.x. Epub 2011 Oct 4.

41.

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing.

Bancroft I, Morgan C, Fraser F, Higgins J, Wells R, Clissold L, Baker D, Long Y, Meng J, Wang X, Liu S, Trick M.

Nat Biotechnol. 2011 Jul 31;29(8):762-6. doi: 10.1038/nbt.1926.

PMID:
21804563
42.

Towards the genetic architecture of seed lipid biosynthesis and accumulation in Arabidopsis thaliana.

O'Neill CM, Morgan C, Hattori C, Brennan M, Rosas U, Tschoep H, Deng PX, Baker D, Wells R, Bancroft I.

Heredity (Edinb). 2012 Feb;108(2):115-23. doi: 10.1038/hdy.2011.54. Epub 2011 Jul 6.

43.

The identification and mapping of candidate genes and QTL involved in the fatty acid desaturation pathway in Brassica napus.

Smooker AM, Wells R, Morgan C, Beaudoin F, Cho K, Fraser F, Bancroft I.

Theor Appl Genet. 2011 Apr;122(6):1075-90. doi: 10.1007/s00122-010-1512-5. Epub 2010 Dec 24.

PMID:
21184048
44.

Sequence and structure of Brassica rapa chromosome A3.

Mun JH, Kwon SJ, Seol YJ, Kim JA, Jin M, Kim JS, Lim MH, Lee SI, Hong JK, Park TH, Lee SC, Kim BJ, Seo MS, Baek S, Lee MJ, Shin JY, Hahn JH, Hwang YJ, Lim KB, Park JY, Lee J, Yang TJ, Yu HJ, Choi IY, Choi BS, Choi SR, Ramchiary N, Lim YP, Fraser F, Drou N, Soumpourou E, Trick M, Bancroft I, Sharpe AG, Parkin IA, Batley J, Edwards D, Park BS.

Genome Biol. 2010;11(9):R94. doi: 10.1186/gb-2010-11-9-r94. Epub 2010 Sep 27.

45.

Sequence-level comparative analysis of the Brassica napus genome around two stearoyl-ACP desaturase loci.

Cho K, O'Neill CM, Kwon SJ, Yang TJ, Smooker AM, Fraser F, Bancroft I.

Plant J. 2010 Feb;61(4):591-9. doi: 10.1111/j.1365-313X.2009.04084.x. Epub 2009 Nov 19.

46.

Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis.

Trick M, Kwon SJ, Choi SR, Fraser F, Soumpourou E, Drou N, Wang Z, Lee SY, Yang TJ, Mun JH, Paterson AH, Town CD, Pires JC, Pyo Lim Y, Park BS, Bancroft I.

BMC Genomics. 2009 Nov 18;10:539. doi: 10.1186/1471-2164-10-539.

47.

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.

Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, Yu HJ, Kim DS, Kim N, Lim KB, Lee SI, Hahn JH, Lim YP, Bancroft I, Park BS.

Genome Biol. 2009;10(10):R111. doi: 10.1186/gb-2009-10-10-r111. Epub 2009 Oct 12.

48.

Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa.

Kim H, Choi SR, Bae J, Hong CP, Lee SY, Hossain MJ, Van Nguyen D, Jin M, Park BS, Bang JW, Bancroft I, Lim YP.

BMC Genomics. 2009 Sep 15;10:432. doi: 10.1186/1471-2164-10-432.

49.

Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence.

Cheung F, Trick M, Drou N, Lim YP, Park JY, Kwon SJ, Kim JA, Scott R, Pires JC, Paterson AH, Town C, Bancroft I.

Plant Cell. 2009 Jul;21(7):1912-28. doi: 10.1105/tpc.108.060376. Epub 2009 Jul 14.

50.

A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.

Trick M, Cheung F, Drou N, Fraser F, Lobenhofer EK, Hurban P, Magusin A, Town CD, Bancroft I.

BMC Plant Biol. 2009 May 8;9:50. doi: 10.1186/1471-2229-9-50.

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