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Items: 1 to 50 of 171

1.

The elixir phase of chain molecules.

Škrbić T, Hoang TX, Maritan A, Banavar JR, Giacometti A.

Proteins. 2019 Mar;87(3):176-184. doi: 10.1002/prot.25619. Epub 2018 Nov 18.

PMID:
30371948
2.

Publisher Correction: Feasibility and coexistence of large ecological communities.

Grilli J, Adorisio M, Suweis S, Barabás G, Banavar JR, Allesina S, Maritan A.

Nat Commun. 2018 Jul 13;9:16228. doi: 10.1038/ncomms16228.

3.

Upscaling species richness and abundances in tropical forests.

Tovo A, Suweis S, Formentin M, Favretti M, Volkov I, Banavar JR, Azaele S, Maritan A.

Sci Adv. 2017 Oct 18;3(10):e1701438. doi: 10.1126/sciadv.1701438. eCollection 2017 Oct.

4.

Feasibility and coexistence of large ecological communities.

Grilli J, Adorisio M, Suweis S, Barabás G, Banavar JR, Allesina S, Maritan A.

Nat Commun. 2017 Feb 24;8. doi: 10.1038/ncomms14389. Erratum in: Nat Commun. 2018 Jul 13;9:16228.

5.

Corrigendum to "Generalized CNS arousal: An elementary force within the vertebrate nervous system" [Neurosci. Biobehav. Rev. 68 (2016) 167-176].

Calderon DP, Kilinc M, Maritan A, Banavar JR, Pfaff D.

Neurosci Biobehav Rev. 2016 Sep;68:1021. doi: 10.1016/j.neubiorev.2016.06.035. Epub 2016 Jul 5. No abstract available.

6.

Uncovering low-dimensional, miR-based signatures of acute myeloid and lymphoblastic leukemias with a machine-learning-driven network approach.

Candia J, Cherukuri S, Guo Y, Doshi KA, Banavar JR, Civin CI, Losert W.

Converg Sci Phys Oncol. 2015 Dec;1(2). pii: 025002. Epub 2015 Dec 21.

7.

Generalized CNS arousal: An elementary force within the vertebrate nervous system.

Calderon DP, Kilinc M, Maritan A, Banavar JR, Pfaff D.

Neurosci Biobehav Rev. 2016 Sep;68:167-176. doi: 10.1016/j.neubiorev.2016.05.014. Epub 2016 May 20. Review. Erratum in: Neurosci Biobehav Rev. 2016 Sep;68:1021.

8.

Phase diagram of the ground states of DNA condensates.

Hoang TX, Trinh HL, Giacometti A, Podgornik R, Banavar JR, Maritan A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6):060701. doi: 10.1103/PhysRevE.92.060701. Epub 2015 Dec 28.

PMID:
26764619
9.

Effect of localization on the stability of mutualistic ecological networks.

Suweis S, Grilli J, Banavar JR, Allesina S, Maritan A.

Nat Commun. 2015 Dec 17;6:10179. doi: 10.1038/ncomms10179.

10.

Information-based fitness and the emergence of criticality in living systems.

Hidalgo J, Grilli J, Suweis S, Muñoz MA, Banavar JR, Maritan A.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10095-100. doi: 10.1073/pnas.1319166111. Epub 2014 Jun 30.

11.

Form, function, and evolution of living organisms.

Banavar JR, Cooke TJ, Rinaldo A, Maritan A.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3332-7. doi: 10.1073/pnas.1401336111. Epub 2014 Feb 18.

12.

Evolution and selection of river networks: statics, dynamics, and complexity.

Rinaldo A, Rigon R, Banavar JR, Maritan A, Rodriguez-Iturbe I.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2417-24. doi: 10.1073/pnas.1322700111. Epub 2014 Feb 3.

13.

From toroidal to rod-like condensates of semiflexible polymers.

Hoang TX, Giacometti A, Podgornik R, Nguyen NT, Banavar JR, Maritan A.

J Chem Phys. 2014 Feb 14;140(6):064902. doi: 10.1063/1.4863996.

PMID:
24527935
14.

Understanding health and disease with multidimensional single-cell methods.

Candia J, Banavar JR, Losert W.

J Phys Condens Matter. 2014 Feb 19;26(7):073102. doi: 10.1088/0953-8984/26/7/073102. Epub 2014 Jan 22. Review.

15.

Energy landscape and dynamics of proteins: an exact analysis of a simplified lattice model.

Cieplak M, Banavar JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Oct;88(4):040702. Epub 2013 Oct 22.

PMID:
24229101
16.

From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells.

Candia J, Maunu R, Driscoll M, Biancotto A, Dagur P, McCoy JP Jr, Sen HN, Wei L, Maritan A, Cao K, Nussenblatt RB, Banavar JR, Losert W.

PLoS Comput Biol. 2013;9(9):e1003215. doi: 10.1371/journal.pcbi.1003215. Epub 2013 Sep 5.

17.

Emergence of structural and dynamical properties of ecological mutualistic networks.

Suweis S, Simini F, Banavar JR, Maritan A.

Nature. 2013 Aug 22;500(7463):449-52. doi: 10.1038/nature12438.

PMID:
23969462
18.

Sequence repeats and protein structure.

Hoang TX, Trovato A, Seno F, Banavar JR, Maritan A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Nov;86(5 Pt 1):050901. Epub 2012 Nov 8.

PMID:
23214731
19.

An allometry-based approach for understanding forest structure, predicting tree-size distribution and assessing the degree of disturbance.

Anfodillo T, Carrer M, Simini F, Popa I, Banavar JR, Maritan A.

Proc Biol Sci. 2013 Jan 22;280(1751):20122375. doi: 10.1098/rspb.2012.2375.

20.

Spatial aggregation and the species-area relationship across scales.

Grilli J, Azaele S, Banavar JR, Maritan A.

J Theor Biol. 2012 Nov 21;313:87-97. doi: 10.1016/j.jtbi.2012.07.030. Epub 2012 Aug 9.

PMID:
22902426
21.

Spontaneously broken neutral symmetry in an ecological system.

Borile C, Muñoz MA, Azaele S, Banavar JR, Maritan A.

Phys Rev Lett. 2012 Jul 20;109(3):038102. Epub 2012 Jul 20.

22.

Scale invariance in the dynamics of spontaneous behavior.

Proekt A, Banavar JR, Maritan A, Pfaff DW.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10564-9. doi: 10.1073/pnas.1206894109. Epub 2012 Jun 7.

23.

Amino acid interaction preferences in helical membrane proteins.

Jha AN, Vishveshwara S, Banavar JR.

Protein Eng Des Sel. 2011 Aug;24(8):579-88. doi: 10.1093/protein/gzr022. Epub 2011 Jun 10.

PMID:
21666247
24.

Quantitative descriptions of generalized arousal, an elementary function of the vertebrate brain.

Quinkert AW, Vimal V, Weil ZM, Reeke GN, Schiff ND, Banavar JR, Pfaff DW.

Proc Natl Acad Sci U S A. 2011 Sep 13;108 Suppl 3:15617-23. doi: 10.1073/pnas.1101894108. Epub 2011 May 9. Review.

25.

System size expansion for systems with an absorbing state.

Di Patti F, Azaele S, Banavar JR, Maritan A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jan;83(1 Pt 1):010102. Epub 2011 Jan 24.

26.

Applications of the principle of maximum entropy: from physics to ecology.

Banavar JR, Maritan A, Volkov I.

J Phys Condens Matter. 2010 Feb 17;22(6):063101. doi: 10.1088/0953-8984/22/6/063101. Epub 2010 Jan 22. Review.

PMID:
21389359
27.

A general basis for quarter-power scaling in animals.

Banavar JR, Moses ME, Brown JH, Damuth J, Rinaldo A, Sibly RM, Maritan A.

Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15816-20. doi: 10.1073/pnas.1009974107. Epub 2010 Aug 19.

28.

Phenotypic differences in viral immune escape explained by linking within-host dynamics to host-population immunity.

Pepin KM, Volkov I, Banavar JR, Wilke CO, Grenfell BT.

J Theor Biol. 2010 Aug 21;265(4):501-10. doi: 10.1016/j.jtbi.2010.05.036. Epub 2010 Jun 4.

29.

Self-similarity and scaling in forest communities.

Simini F, Anfodillo T, Carrer M, Banavar JR, Maritan A.

Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7658-62. doi: 10.1073/pnas.1000137107. Epub 2010 Apr 7.

30.

Synthesizing within-host and population-level selective pressures on viral populations: the impact of adaptive immunity on viral immune escape.

Volkov I, Pepin KM, Lloyd-Smith JO, Banavar JR, Grenfell BT.

J R Soc Interface. 2010 Sep 6;7(50):1311-8. doi: 10.1098/rsif.2009.0560. Epub 2010 Mar 24.

31.

Amino acid interaction preferences in proteins.

Jha AN, Vishveshwara S, Banavar JR.

Protein Sci. 2010 Mar;19(3):603-16. doi: 10.1002/pro.339.

32.

Probing noise in gene expression and protein production.

Azaele S, Banavar JR, Maritan A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Sep;80(3 Pt 1):031916. Epub 2009 Sep 24.

33.

Inferring species interactions in tropical forests.

Volkov I, Banavar JR, Hubbell SP, Maritan A.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13854-9. doi: 10.1073/pnas.0903244106. Epub 2009 Aug 4.

34.

Ecology: Towards a theory of biodiversity.

Banavar JR, Maritan A.

Nature. 2009 Jul 16;460(7253):334-5. doi: 10.1038/460334a. No abstract available.

PMID:
19606135
35.

First-principles design of nanomachines.

Banavar JR, Cieplak M, Hoang TX, Maritan A.

Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):6900-3. doi: 10.1073/pnas.0901429106. Epub 2009 Apr 9.

36.

Incipient criticality in ecological communities.

Zillio T, Banavar JR, Green JL, Harte J, Maritan A.

Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18714-7. doi: 10.1073/pnas.0807380105. Epub 2008 Nov 24.

37.

Inference of the solvation energy parameters of amino acids using maximum entropy approach.

Hoang TX, Seno F, Trovato A, Banavar JR, Maritan A.

J Chem Phys. 2008 Jul 21;129(3):035102. doi: 10.1063/1.2953691.

PMID:
18647046
38.

Emergence of secondary motifs in tubelike polymers in a solvent.

Poletto C, Giacometti A, Trovato A, Banavar JR, Maritan A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 1):061804. Epub 2008 Jun 18.

PMID:
18643292
39.

Maximum entropy approach for deducing amino Acid interactions in proteins.

Seno F, Trovato A, Banavar JR, Maritan A.

Phys Rev Lett. 2008 Feb 22;100(7):078102. Epub 2008 Feb 20.

PMID:
18352600
40.

Molecular dynamics of immiscible fluids in chemically patterned nanochannels.

Cieplak M, Banavar JR.

J Chem Phys. 2008 Mar 14;128(10):104709. doi: 10.1063/1.2837804.

PMID:
18345921
41.

Symmetry, shape, and order.

Trovato A, Hoang TX, Banavar JR, Maritan A.

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19187-92. Epub 2007 Nov 21.

42.

Patterns of relative species abundance in rainforests and coral reefs.

Volkov I, Banavar JR, Hubbell SP, Maritan A.

Nature. 2007 Nov 1;450(7166):45-9.

PMID:
17972874
43.

Structural motifs of biomolecules.

Banavar JR, Hoang TX, Maddocks JH, Maritan A, Poletto C, Stasiak A, Trovato A.

Proc Natl Acad Sci U S A. 2007 Oct 30;104(44):17283-6. Epub 2007 Oct 24.

44.

A theoretical framework for CNS arousal.

Pfaff D, Banavar JR.

Bioessays. 2007 Aug;29(8):803-10. Review.

PMID:
17621668
45.

Physics of proteins.

Banavar JR, Maritan A.

Annu Rev Biophys Biomol Struct. 2007;36:261-80. Review.

PMID:
17477839
46.

Scaling in ecosystems and the linkage of macroecological laws.

Banavar JR, Damuth J, Maritan A, Rinaldo A.

Phys Rev Lett. 2007 Feb 9;98(6):068104. Epub 2007 Feb 9.

PMID:
17358987
47.

Dynamical evolution of ecosystems.

Azaele S, Pigolotti S, Banavar JR, Maritan A.

Nature. 2006 Dec 14;444(7121):926-8.

PMID:
17167485
48.

Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns.

Lezon TR, Banavar JR, Cieplak M, Maritan A, Fedoroff NV.

Proc Natl Acad Sci U S A. 2006 Dec 12;103(50):19033-8. Epub 2006 Nov 30.

49.

A backbone-based theory of protein folding.

Rose GD, Fleming PJ, Banavar JR, Maritan A.

Proc Natl Acad Sci U S A. 2006 Nov 7;103(45):16623-33. Epub 2006 Oct 30. Review.

50.

Comment on "Computational improvements reveal great bacterial diversity and high metal toxicity in soil".

Volkov I, Banavar JR, Maritan A.

Science. 2006 Aug 18;313(5789):918; author reply 918.

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