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Items: 1 to 50 of 116

1.

Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016.

Senchyna F, Gaur RL, Sandlund J, Truong C, Tremintin G, Kültz D, Gomez CA, Tamburini FB, Andermann T, Bhatt A, Tickler I, Watz N, Budvytiene I, Shi G, Tenover FC, Banaei N.

Diagn Microbiol Infect Dis. 2018 Oct 13. pii: S0732-8893(18)30473-5. doi: 10.1016/j.diagmicrobio.2018.10.004. [Epub ahead of print]

PMID:
30482638
2.

Clinical Impact of Clostridium difficile PCR Cycle Threshold-Predicted Toxin Reporting in Pediatric Patients.

Schwenk HT, Bio LL, Kruger JF, Banaei N.

J Pediatric Infect Dis Soc. 2018 Nov 22. doi: 10.1093/jpids/piy117. [Epub ahead of print]

PMID:
30476169
3.

Towards the development of a cfDNA-based in-vitro diagnostic test for infectious diseases: A review of evidence for tuberculosis.

Fernández-Carballo BL, Broger T, Wyss R, Banaei N, Denkinger CM.

J Clin Microbiol. 2018 Nov 7. pii: JCM.01234-18. doi: 10.1128/JCM.01234-18. [Epub ahead of print] Review.

4.

1H, 13C and 15N resonance assignments and structure prediction of translation initiation factor 1 from Clostridium difficile.

Aguilar F, Banaei N, Zhang Y.

Biomol NMR Assign. 2018 Oct 28. doi: 10.1007/s12104-018-9858-8. [Epub ahead of print]

PMID:
30370502
5.

Higher positivity rate with 4th generation QuantiFERON-TB Gold Plus assay in low-risk U.S. healthcare workers.

Hogan C, Tien S, Pai M, Banaei N.

J Clin Microbiol. 2018 Oct 24. pii: JCM.01688-18. doi: 10.1128/JCM.01688-18. [Epub ahead of print]

PMID:
30355762
6.

Precision identification of diverse bloodstream pathogens in the gut microbiome.

Tamburini FB, Andermann TM, Tkachenko E, Senchyna F, Banaei N, Bhatt AS.

Nat Med. 2018 Dec;24(12):1809-1814. doi: 10.1038/s41591-018-0202-8. Epub 2018 Oct 15.

PMID:
30323331
7.

Ultrasensitive Detection of Clostridioides difficile Toxins A and B by Use of Automated Single-Molecule Counting Technology.

Sandlund J, Bartolome A, Almazan A, Tam S, Biscocho S, Abusali S, Bishop JJ, Nolan N, Estis J, Todd J, Young S, Senchyna F, Banaei N.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00908-18. doi: 10.1128/JCM.00908-18. Print 2018 Nov.

PMID:
30158195
8.

Rapid and specific labeling of single live Mycobacterium tuberculosis with a dual-targeting fluorogenic probe.

Cheng Y, Xie J, Lee KH, Gaur RL, Song A, Dai T, Ren H, Wu J, Sun Z, Banaei N, Akin D, Rao J.

Sci Transl Med. 2018 Aug 15;10(454). pii: eaar4470. doi: 10.1126/scitranslmed.aar4470.

PMID:
30111644
9.

Development of colorimetric sensor array for diagnosis of tuberculosis through detection of urinary volatile organic compounds.

Sandlund J, Lim S, Queralto N, Huang R, Yun J, Taba B, Song R, Odero R, Ouma G, Sitati R, Murithi W, Cain KP, Banaei N.

Diagn Microbiol Infect Dis. 2018 Dec;92(4):299-304. doi: 10.1016/j.diagmicrobio.2018.06.014. Epub 2018 Jun 22.

PMID:
30025968
10.

Liquid biopsy for infectious diseases: sequencing of cell-free plasma to detect pathogen DNA in patients with invasive fungal disease.

Hong DK, Blauwkamp TA, Kertesz M, Bercovici S, Truong C, Banaei N.

Diagn Microbiol Infect Dis. 2018 Nov;92(3):210-213. doi: 10.1016/j.diagmicrobio.2018.06.009. Epub 2018 Jun 22.

11.

Spiking of intravenous bags does not cause time-dependent microbial contamination: a preliminary report.

Brock-Utne JG, Smith SC, Banaei N, Chang SC, Alejandro-Harper D, Jaffe RA.

Infect Control Hosp Epidemiol. 2018 Sep;39(9):1029-1030. doi: 10.1017/ice.2018.143. Epub 2018 Jul 2. No abstract available.

PMID:
29961441
12.

Trypanosoma cruzi Reactivation in the Brain.

Gomez CA, Banaei N.

N Engl J Med. 2018 May 10;378(19):1824. doi: 10.1056/NEJMicm1703763. No abstract available.

PMID:
29742366
13.

Intramolecular substitution uncages fluorogenic probes for detection of metallo-carbapenemase-expressing bacteria.

Song A, Cheng Y, Xie J, Banaei N, Rao J.

Chem Sci. 2017 Nov 1;8(11):7669-7674. doi: 10.1039/c7sc02416a. Epub 2017 Sep 21.

14.

Evaluation of the Xpert MTB/RIF Performance on Tissues: Potential Impact on Airborne Infection Isolation at a Tertiary Cancer Care Center.

McMillen T, Usiak SC, Chen LH, Gomez L, Ntiamoah P, Hameed MR, Budvytiene I, Banaei N, Kamboj M, Babady NE.

Infect Control Hosp Epidemiol. 2018 Apr;39(4):462-466. doi: 10.1017/ice.2018.7. Epub 2018 Feb 15.

PMID:
29444723
15.
16.

Low Yield of FilmArray GI Panel in Hospitalized Patients with Diarrhea: an Opportunity for Diagnostic Stewardship Intervention.

Hitchcock MM, Gomez CA, Banaei N.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01558-17. doi: 10.1128/JCM.01558-17. Print 2018 Mar.

17.

Microfluidics for Combating Antimicrobial Resistance.

Liu Z, Banaei N, Ren K.

Trends Biotechnol. 2017 Dec;35(12):1129-1139. doi: 10.1016/j.tibtech.2017.07.008. Epub 2017 Nov 15. Review.

PMID:
29153761
18.

Performance of Targeted Fungal Sequencing for Culture-Independent Diagnosis of Invasive Fungal Disease.

Gomez CA, Budvytiene I, Zemek AJ, Banaei N.

Clin Infect Dis. 2017 Nov 29;65(12):2035-2041. doi: 10.1093/cid/cix728.

PMID:
29020284
19.

Multiplex detection of pancreatic cancer biomarkers using a SERS-based immunoassay.

Banaei N, Foley A, Houghton JM, Sun Y, Kim B.

Nanotechnology. 2017 Nov 10;28(45):455101. doi: 10.1088/1361-6528/aa8e8c.

PMID:
28937361
20.

Small Colony Variants of Pseudomonas aeruginosa Display Heterogeneity in Inhibiting Aspergillus fumigatus Biofilm.

Anand R, Moss RB, Sass G, Banaei N, Clemons KV, Martinez M, Stevens DA.

Mycopathologia. 2018 Feb;183(1):263-272. doi: 10.1007/s11046-017-0186-9. Epub 2017 Aug 7.

PMID:
28785939
21.

Detecting New Mycobacterium tuberculosis Infection. Time for a More Nuanced Interpretation of QuantiFERON Conversions.

Banaei N, Pai M.

Am J Respir Crit Care Med. 2017 Sep 1;196(5):546-547. doi: 10.1164/rccm.201707-1543ED. No abstract available.

PMID:
28763239
22.

Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children.

Waggoner J, Brichard J, Mutuku F, Ndenga B, Heath CJ, Mohamed-Hadley A, Sahoo MK, Vulule J, Lefterova M, Banaei N, Mukoko D, Pinsky BA, LaBeaud AD.

Open Forum Infect Dis. 2017 May 29;4(3):ofx110. doi: 10.1093/ofid/ofx110. eCollection 2017 Summer.

23.

Clostridium difficile PCR Cycle Threshold Predicts Free Toxin.

Senchyna F, Gaur RL, Gombar S, Truong CY, Schroeder LF, Banaei N.

J Clin Microbiol. 2017 Sep;55(9):2651-2660. doi: 10.1128/JCM.00563-17. Epub 2017 Jun 14.

24.

Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel.

Gomez CA, Pinsky BA, Liu A, Banaei N.

Open Forum Infect Dis. 2016 Dec 7;4(1):ofw245. doi: 10.1093/ofid/ofw245. eCollection 2017 Winter.

25.

Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.

Doan T, Acharya NR, Pinsky BA, Sahoo MK, Chow ED, Banaei N, Budvytiene I, Cevallos V, Zhong L, Zhou Z, Lietman TM, DeRisi JL.

Ophthalmology. 2017 Aug;124(8):1247-1248. doi: 10.1016/j.ophtha.2017.03.045. Epub 2017 May 16. No abstract available.

26.

Susceptibility of Candida albicans from Cystic Fibrosis Patients.

Sabino R, Carolino E, Moss RB, Banaei N, Verissimo C, Stevens DA.

Mycopathologia. 2017 Oct;182(9-10):863-867. doi: 10.1007/s11046-017-0133-9. Epub 2017 Apr 18.

PMID:
28421452
27.

Evaluation of QuantiFERON-TB Gold-Plus in Health Care Workers in a Low-Incidence Setting.

Moon HW, Gaur RL, Tien SS, Spangler M, Pai M, Banaei N.

J Clin Microbiol. 2017 Jun;55(6):1650-1657. doi: 10.1128/JCM.02498-16. Epub 2017 Mar 15.

28.

Real-Time Electronic Tracking of Diarrheal Episodes and Laxative Therapy Enables Verification of Clostridium difficile Clinical Testing Criteria and Reduction of Clostridium difficile Infection Rates.

Truong CY, Gombar S, Wilson R, Sundararajan G, Tekic N, Holubar M, Shepard J, Madison A, Tompkins L, Shah N, Deresinski S, Schroeder LF, Banaei N.

J Clin Microbiol. 2017 May;55(5):1276-1284. doi: 10.1128/JCM.02319-16. Epub 2017 Mar 1.

29.

New and developing diagnostic technologies for urinary tract infections.

Davenport M, Mach KE, Shortliffe LMD, Banaei N, Wang TH, Liao JC.

Nat Rev Urol. 2017 May;14(5):296-310. doi: 10.1038/nrurol.2017.20. Epub 2017 Mar 1. Review.

30.

Is Follow-Up Testing with the FilmArray Gastrointestinal Multiplex PCR Panel Necessary?

Park S, Hitchcock MM, Gomez CA, Banaei N.

J Clin Microbiol. 2017 Apr;55(4):1154-1161. doi: 10.1128/JCM.02354-16. Epub 2017 Jan 25.

31.

Fatal Emmonsia sp. Infection and Fungemia after Orthotopic Liver Transplantation.

Kappagoda S, Adams JY, Luo R, Banaei N, Concepcion W, Ho DY.

Emerg Infect Dis. 2017 Feb;23(2):346-349. doi: 10.3201/eid2302.160799.

32.

Clostridium difficile rates in asymptomatic and symptomatic hospitalized patients using nucleic acid testing.

Truong C, Schroeder LF, Gaur R, Anikst VE, Komo I, Watters C, McCalley E, Kulik C, Pickham D, Lee NJ, Banaei N.

Diagn Microbiol Infect Dis. 2017 Apr;87(4):365-370. doi: 10.1016/j.diagmicrobio.2016.12.014. Epub 2017 Jan 3.

PMID:
28087170
33.

Are Cystic Fibrosis Aspergillus fumigatus Isolates Different? Intermicrobial Interactions with Pseudomonas.

Nazik H, Moss RB, Karna V, Clemons KV, Banaei N, Cohen K, Choudhary V, Stevens DA.

Mycopathologia. 2017 Apr;182(3-4):315-318. doi: 10.1007/s11046-016-0087-3. Epub 2016 Nov 7.

PMID:
27822731
34.

Adenosine triphosphate bioluminescence for bacteriologic surveillance and reprocessing strategies for minimizing risk of infection transmission by duodenoscopes.

Sethi S, Huang RJ, Barakat MT, Banaei N, Friedland S, Banerjee S.

Gastrointest Endosc. 2017 Jun;85(6):1180-1187.e1. doi: 10.1016/j.gie.2016.10.035. Epub 2016 Nov 3.

35.

Determining the cause of recurrent Clostridium difficile infection using whole genome sequencing.

Sim JH, Truong C, Minot SS, Greenfield N, Budvytiene I, Lohith A, Anikst V, Pourmand N, Banaei N.

Diagn Microbiol Infect Dis. 2017 Jan;87(1):11-16. doi: 10.1016/j.diagmicrobio.2016.09.023. Epub 2016 Oct 5.

PMID:
27771207
36.

Serial testing for latent tuberculosis using QuantiFERON-TB Gold In-Tube: A Markov model.

Moses MW, Zwerling A, Cattamanchi A, Denkinger CM, Banaei N, Kik SV, Metcalfe J, Pai M, Dowdy D.

Sci Rep. 2016 Jul 29;6:30781. doi: 10.1038/srep30781.

37.

Rapid Diagnosis of Tuberculosis from Analysis of Urine Volatile Organic Compounds.

Lim SH, Martino R, Anikst V, Xu Z, Mix S, Benjamin R, Schub H, Eiden M, Rhodes PA, Banaei N.

ACS Sens. 2016 Jul 22;1(7):852-856. doi: 10.1021/acssensors.6b00309. Epub 2016 Jun 9.

38.

Toxin Immunoassays and Clostridium difficile Infection.

Banaei N, Schroeder LF.

JAMA Intern Med. 2016 Mar;176(3):413. doi: 10.1001/jamainternmed.2015.8525. No abstract available.

PMID:
26954049
39.

Organism burden, toxin concentration, and lactoferrin concentration do not distinguish between clinically significant and nonsignificant diarrhea in patients with Clostridium difficile.

Anikst VE, Gaur RL, Schroeder LF, Banaei N.

Diagn Microbiol Infect Dis. 2016 Apr;84(4):343-6. doi: 10.1016/j.diagmicrobio.2015.11.022. Epub 2015 Nov 30.

PMID:
26778484
40.

Interferon Gamma Release Assays for Latent Tuberculosis: What Are the Sources of Variability?

Banaei N, Gaur RL, Pai M.

J Clin Microbiol. 2016 Apr;54(4):845-50. doi: 10.1128/JCM.02803-15. Epub 2016 Jan 13. Review.

41.

Integrated Biosensor Assay for Rapid Uropathogen Identification and Phenotypic Antimicrobial Susceptibility Testing.

Altobelli E, Mohan R, Mach KE, Sin MLY, Anikst V, Buscarini M, Wong PK, Gau V, Banaei N, Liao JC.

Eur Urol Focus. 2017 Apr;3(2-3):293-299. doi: 10.1016/j.euf.2015.12.010. Epub 2016 Jan 15.

42.

Bacterial culture detection and identification in blood agar plates with an optoelectronic nose.

Lim SH, Mix S, Anikst V, Budvytiene I, Eiden M, Churi Y, Queralto N, Berliner A, Martino RA, Rhodes PA, Banaei N.

Analyst. 2016 Feb 7;141(3):918-25. doi: 10.1039/c5an01990g. Epub 2016 Jan 11.

PMID:
26753182
43.

Correction: LprG-Mediated Surface Expression of Lipoarabinomannan Is Essential for Virulence of Mycobacterium tuberculosis.

Gaur RL, Ren K, Blumenthal A, Bhamidi S, Gibbs S, Jackson M, Zare RN, Ehrt S, Ernst JD, Banaei N.

PLoS Pathog. 2015 Dec 9;11(12):e1005336. doi: 10.1371/journal.ppat.1005336. eCollection 2015 Dec.

44.

First case of infectious endocarditis caused by Parvimonas micra.

Gomez CA, Gerber DA, Zambrano E, Banaei N, Deresinski S, Blackburn BG.

Anaerobe. 2015 Dec;36:53-5. doi: 10.1016/j.anaerobe.2015.10.007. Epub 2015 Oct 17.

PMID:
26485192
45.

Next-Generation Sequencing for Infectious Disease Diagnosis and Management: A Report of the Association for Molecular Pathology.

Lefterova MI, Suarez CJ, Banaei N, Pinsky BA.

J Mol Diagn. 2015 Nov;17(6):623-34. doi: 10.1016/j.jmoldx.2015.07.004. Epub 2015 Sep 30. Review.

PMID:
26433313
46.

A small-molecule antivirulence agent for treating Clostridium difficile infection.

Bender KO, Garland M, Ferreyra JA, Hryckowian AJ, Child MA, Puri AW, Solow-Cordero DE, Higginbottom SK, Segal E, Banaei N, Shen A, Sonnenburg JL, Bogyo M.

Sci Transl Med. 2015 Sep 23;7(306):306ra148. doi: 10.1126/scitranslmed.aac9103. Epub 2015 Sep 23.

47.

Molecular Testing for Plasmodium falciparum by Use of Serum or Plasma and Comparison with Microscopy and Rapid Diagnostic Testing in Febrile Nigerian Patients.

Waggoner JJ, Okangba C, Mohamed-Hadley A, Lefterova MI, Banaei N, Oyibo W, Pinsky BA.

J Clin Microbiol. 2015 Nov;53(11):3596-600. doi: 10.1128/JCM.01876-15. Epub 2015 Sep 9.

48.

First case of mesh infection due to Coccidioides spp. and literature review of fungal mesh infections after hernia repair.

Forrester JD, Gomez CA, Forrester JA, Nguyen M, Gregg D, Deresinski S, Banaei N, Weiser TG.

Mycoses. 2015 Oct;58(10):582-7. doi: 10.1111/myc.12364. Epub 2015 Aug 20. Review.

PMID:
26293423
49.

Inhibition of Aspergillus fumigatus and Its Biofilm by Pseudomonas aeruginosa Is Dependent on the Source, Phenotype and Growth Conditions of the Bacterium.

Ferreira JA, Penner JC, Moss RB, Haagensen JA, Clemons KV, Spormann AM, Nazik H, Cohen K, Banaei N, Carolino E, Stevens DA.

PLoS One. 2015 Aug 7;10(8):e0134692. doi: 10.1371/journal.pone.0134692. eCollection 2015.

50.

Ribosomal RNA gene sequencing for early diagnosis of Blastomyces dermatitidis infection.

Morjaria S, Otto C, Moreira A, Chung R, Hatzoglou V, Pillai M, Banaei N, Tang YW, Figueroa CJ.

Int J Infect Dis. 2015 Aug;37:122-4. doi: 10.1016/j.ijid.2015.06.017. Epub 2015 Jun 28.

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