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Items: 1 to 50 of 313

1.

Asymmetrical flow field-flow fractionation in purification of an enveloped bacteriophage ϕ6.

Lampi M, Oksanen HM, Meier F, Moldenhauer E, Poranen MM, Bamford DH, Eskelin K.

J Chromatogr B Analyt Technol Biomed Life Sci. 2018 Sep 15;1095:251-257. doi: 10.1016/j.jchromb.2018.07.008. Epub 2018 Jul 10.

PMID:
30098552
2.

Genome Sequence of PM2-Like Phage Cr39582, Induced from a Pseudoalteromonas sp. Isolated from the Gut of Ciona robusta.

Leigh BA, Breitbart M, Oksanen HM, Bamford DH, Dishaw LJ.

Genome Announc. 2018 May 24;6(21). pii: e00368-18. doi: 10.1128/genomeA.00368-18.

3.

Extremely halophilic pleomorphic archaeal virus HRPV9 extends the diversity of pleolipoviruses with integrases.

Atanasova NS, Demina TA, Krishnam Rajan Shanthi SNV, Oksanen HM, Bamford DH.

Res Microbiol. 2018 May 14. pii: S0923-2508(18)30060-3. doi: 10.1016/j.resmic.2018.04.004. [Epub ahead of print]

4.

Membrane-containing virus particles exhibit the mechanics of a composite material for genome protection.

Azinas S, Bano F, Torca I, Bamford DH, Schwartz GA, Esnaola J, Oksanen HM, Richter RP, Abrescia NG.

Nanoscale. 2018 Apr 26;10(16):7769-7779. doi: 10.1039/c8nr00196k.

5.

The Unexplored Diversity of Pleolipoviruses: The Surprising Case of Two Viruses with Identical Major Structural Modules.

Atanasova NS, Heiniö CH, Demina TA, Bamford DH, Oksanen HM.

Genes (Basel). 2018 Feb 28;9(3). pii: E131. doi: 10.3390/genes9030131.

6.

Towards in cellulo virus crystallography.

Duyvesteyn HME, Ginn HM, Pietilä MK, Wagner A, Hattne J, Grimes JM, Hirvonen E, Evans G, Parsy ML, Sauter NK, Brewster AS, Huiskonen JT, Stuart DI, Sutton G, Bamford DH.

Sci Rep. 2018 Feb 28;8(1):3771. doi: 10.1038/s41598-018-21693-3.

7.

The first known virus isolates from Antarctic sea ice have complex infection patterns.

Luhtanen AM, Eronen-Rasimus E, Oksanen HM, Tison JL, Delille B, Dieckmann GS, Rintala JM, Bamford DH.

FEMS Microbiol Ecol. 2018 Apr 1;94(4). doi: 10.1093/femsec/fiy028.

PMID:
29481638
8.

ICTV Virus Taxonomy Profile: Pleolipoviridae.

Bamford DH, Pietilä MK, Roine E, Atanasova NS, Dienstbier A, Oksanen HM, Ictv Report Consortium.

J Gen Virol. 2017 Dec;98(12):2916-2917. doi: 10.1099/jgv.0.000972. Epub 2017 Nov 10.

9.

The enigmatic archaeal virosphere.

Prangishvili D, Bamford DH, Forterre P, Iranzo J, Koonin EV, Krupovic M.

Nat Rev Microbiol. 2017 Nov 10;15(12):724-739. doi: 10.1038/nrmicro.2017.125. Review.

PMID:
29123227
10.

Halophilic viruses with varying biochemical and biophysical properties are amenable to purification with asymmetrical flow field-flow fractionation.

Eskelin K, Lampi M, Meier F, Moldenhauer E, Bamford DH, Oksanen HM.

Extremophiles. 2017 Nov;21(6):1119-1132. doi: 10.1007/s00792-017-0963-x. Epub 2017 Oct 10.

PMID:
29019077
11.

Topical treatment of herpes simplex virus infection with enzymatically created siRNA swarm.

Paavilainen H, Lehtinen J, Romanovskaya A, Nygårdas M, Bamford DH, Poranen MM, Hukkanen V.

Antivir Ther. 2017;22(7):631-637. doi: 10.3851/IMP3153. Epub 2017 Mar 13.

PMID:
28287396
12.

HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae.

Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM.

Viruses. 2017 Feb 18;9(2). pii: E32. doi: 10.3390/v9020032. Review.

13.

Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification.

Sinclair RM, Ravantti JJ, Bamford DH.

J Virol. 2017 Mar 29;91(8). pii: e02275-16. doi: 10.1128/JVI.02275-16. Print 2017 Apr 15.

14.

Membrane-assisted viral DNA ejection.

Santos-Pérez I, Oksanen HM, Bamford DH, Goñi FM, Reguera D, Abrescia NGA.

Biochim Biophys Acta Gen Subj. 2017 Mar;1861(3):664-672. doi: 10.1016/j.bbagen.2016.12.013. Epub 2016 Dec 16.

PMID:
27993658
15.

Newly isolated Nodularia phage influences cyanobacterial community dynamics.

Coloma SE, Dienstbier A, Bamford DH, Sivonen K, Roine E, Hiltunen T.

Environ Microbiol. 2017 Jan;19(1):273-286. doi: 10.1111/1462-2920.13601. Epub 2017 Jan 23.

PMID:
27878952
16.

Regulation of kynurenine biosynthesis during influenza virus infection.

Gaelings L, Söderholm S, Bugai A, Fu Y, Nandania J, Schepens B, Lorey MB, Tynell J, Vande Ginste L, Le Goffic R, Miller MS, Kuisma M, Marjomäki V, De Brabander J, Matikainen S, Nyman TA, Bamford DH, Saelens X, Julkunen I, Paavilainen H, Hukkanen V, Velagapudi V, Kainov DE.

FEBS J. 2017 Jan;284(2):222-236. doi: 10.1111/febs.13966. Epub 2016 Dec 14.

17.

Single-molecule measurements of viral ssRNA packaging.

Hanhijärvi KJ, Ziedaite G, Bamford DH, Hæggström E, Poranen MM.

RNA. 2017 Jan;23(1):119-129. Epub 2016 Nov 1.

18.

Asymmetric flow field flow fractionation methods for virus purification.

Eskelin K, Lampi M, Meier F, Moldenhauer E, Bamford DH, Oksanen HM.

J Chromatogr A. 2016 Oct 21;1469:108-119. doi: 10.1016/j.chroma.2016.09.055. Epub 2016 Sep 28.

PMID:
27697294
19.

Vesicle-like virion of Haloarcula hispanica pleomorphic virus 3 preserves high infectivity in saturated salt.

Demina TA, Atanasova NS, Pietilä MK, Oksanen HM, Bamford DH.

Virology. 2016 Dec;499:40-51. doi: 10.1016/j.virol.2016.09.002. Epub 2016 Sep 12.

20.

Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments.

Demina TA, Pietilä MK, Svirskaitė J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM.

MBio. 2016 Jul 19;7(4). pii: e00699-16. doi: 10.1128/mBio.00699-16.

21.

Inhibition of clinical pathogenic herpes simplex virus 1 strains with enzymatically created siRNA pools.

Paavilainen H, Lehtinen J, Romanovskaya A, Nygårdas M, Bamford DH, Poranen MM, Hukkanen V.

J Med Virol. 2016 Dec;88(12):2196-2205. doi: 10.1002/jmv.24578. Epub 2016 May 30.

PMID:
27191509
22.

Virus-host interplay in high salt environments.

Atanasova NS, Bamford DH, Oksanen HM.

Environ Microbiol Rep. 2016 Aug;8(4):431-44. doi: 10.1111/1758-2229.12385. Epub 2016 Apr 28. Review.

PMID:
26929102
23.

Monitoring Physiological Changes in Haloarchaeal Cell during Virus Release.

Svirskaitė J, Oksanen HM, Daugelavičius R, Bamford DH.

Viruses. 2016 Feb 24;8(3):59. doi: 10.3390/v8030059.

24.

Temperature and pH dependence of DNA ejection from archaeal lemon-shaped virus His1.

Hanhijärvi KJ, Ziedaite G, Hæggström E, Bamford DH.

Eur Biophys J. 2016 Jul;45(5):435-42. doi: 10.1007/s00249-016-1112-7. Epub 2016 Jan 28.

PMID:
26820561
25.

K2 killer toxin-induced physiological changes in the yeast Saccharomyces cerevisiae.

Orentaite I, Poranen MM, Oksanen HM, Daugelavicius R, Bamford DH.

FEMS Yeast Res. 2016 Mar;16(2):fow003. doi: 10.1093/femsyr/fow003. Epub 2016 Jan 26.

PMID:
26818855
26.

Buried Alive: Microbes from Ancient Halite.

Jaakkola ST, Ravantti JJ, Oksanen HM, Bamford DH.

Trends Microbiol. 2016 Feb;24(2):148-160. doi: 10.1016/j.tim.2015.12.002. Epub 2016 Jan 13. Review.

PMID:
26796472
27.

Immuno-modulating properties of saliphenylhalamide, SNS-032, obatoclax, and gemcitabine.

Söderholm S, Anastasina M, Islam MM, Tynell J, Poranen MM, Bamford DH, Stenman J, Julkunen I, Šaulienė I, De Brabander JK, Matikainen S, Nyman TA, Saelens X, Kainov D.

Antiviral Res. 2016 Feb;126:69-80. doi: 10.1016/j.antiviral.2015.12.011. Epub 2015 Dec 29.

28.

The complete genome of a viable archaeum isolated from 123-million-year-old rock salt.

Jaakkola ST, Pfeiffer F, Ravantti JJ, Guo Q, Liu Y, Chen X, Ma H, Yang C, Oksanen HM, Bamford DH.

Environ Microbiol. 2016 Feb;18(2):565-79. doi: 10.1111/1462-2920.13130. Epub 2016 Jan 18.

PMID:
26628271
29.

Pleolipoviridae, a newly proposed family comprising archaeal pleomorphic viruses with single-stranded or double-stranded DNA genomes.

Pietilä MK, Roine E, Sencilo A, Bamford DH, Oksanen HM.

Arch Virol. 2016 Jan;161(1):249-56. doi: 10.1007/s00705-015-2613-x. Epub 2015 Oct 12.

PMID:
26459284
30.

Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Quemin ER, Pietilä MK, Oksanen HM, Forterre P, Rijpstra WI, Schouten S, Bamford DH, Prangishvili D, Krupovic M.

J Virol. 2015 Nov;89(22):11681-91. doi: 10.1128/JVI.02270-15. Epub 2015 Sep 9.

31.

Identification and characterization of SNJ2, the first temperate pleolipovirus integrating into the genome of the SNJ1-lysogenic archaeal strain.

Liu Y, Wang J, Liu Y, Wang Y, Zhang Z, Oksanen HM, Bamford DH, Chen X.

Mol Microbiol. 2015 Dec;98(6):1002-20. doi: 10.1111/mmi.13204. Epub 2015 Sep 25.

32.

Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins.

Gil-Carton D, Jaakkola ST, Charro D, Peralta B, Castaño-Díez D, Oksanen HM, Bamford DH, Abrescia NGA.

Structure. 2015 Oct 6;23(10):1866-1877. doi: 10.1016/j.str.2015.07.015. Epub 2015 Aug 27.

33.

Haloarchaeal virus morphotypes.

Atanasova NS, Bamford DH, Oksanen HM.

Biochimie. 2015 Nov;118:333-43. doi: 10.1016/j.biochi.2015.07.002. Epub 2015 Jul 4.

PMID:
26151345
34.

Haloviruses of archaea, bacteria, and eukaryotes.

Atanasova NS, Oksanen HM, Bamford DH.

Curr Opin Microbiol. 2015 Jun;25:40-8. doi: 10.1016/j.mib.2015.04.001. Epub 2015 Apr 28. Review.

PMID:
25932531
35.

Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).

Adams MJ, Lefkowitz EJ, King AM, Bamford DH, Breitbart M, Davison AJ, Ghabrial SA, Gorbalenya AE, Knowles NJ, Krell P, Lavigne R, Prangishvili D, Sanfaçon H, Siddell SG, Simmonds P, Carstens EB.

Arch Virol. 2015 Jul;160(7):1837-50. doi: 10.1007/s00705-015-2425-z.

PMID:
25913692
36.

Archaeal viruses multiply: temporal screening in a solar saltern.

Atanasova NS, Demina TA, Buivydas A, Bamford DH, Oksanen HM.

Viruses. 2015 Apr 10;7(4):1902-26. doi: 10.3390/v7041902.

37.

Comparison of lipid-containing bacterial and archaeal viruses.

Atanasova NS, Senčilo A, Pietilä MK, Roine E, Oksanen HM, Bamford DH.

Adv Virus Res. 2015;92:1-61. doi: 10.1016/bs.aivir.2014.11.005. Epub 2015 Jan 13. Review.

PMID:
25701885
38.

Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase.

Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen MM, Depken M, Dekker NH.

Cell Rep. 2015 Feb 11. pii: S2211-1247(15)00056-X. doi: 10.1016/j.celrep.2015.01.031. [Epub ahead of print]

39.

Lemon-shaped halo archaeal virus His1 with uniform tail but variable capsid structure.

Hong C, Pietilä MK, Fu CJ, Schmid MF, Bamford DH, Chiu W.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2449-54. doi: 10.1073/pnas.1425008112. Epub 2015 Feb 9.

40.

A structural model of the genome packaging process in a membrane-containing double stranded DNA virus.

Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W.

PLoS Biol. 2014 Dec 16;12(12):e1002024. doi: 10.1371/journal.pbio.1002024. eCollection 2014 Dec.

41.

MAP kinase p38α regulates type III interferon (IFN-λ1) gene expression in human monocyte-derived dendritic cells in response to RNA stimulation.

Jiang M, Österlund P, Fagerlund R, Rios DN, Hoffmann A, Poranen MM, Bamford DH, Julkunen I.

J Leukoc Biol. 2015 Feb;97(2):307-20. doi: 10.1189/jlb.2A0114-059RR. Epub 2014 Dec 3.

PMID:
25473098
42.

Halophilic archaea cultivated from surface sterilized middle-late eocene rock salt are polyploid.

Jaakkola ST, Zerulla K, Guo Q, Liu Y, Ma H, Yang C, Bamford DH, Chen X, Soppa J, Oksanen HM.

PLoS One. 2014 Oct 22;9(10):e110533. doi: 10.1371/journal.pone.0110533. eCollection 2014.

43.

Efficient double-stranded RNA production methods for utilization in plant virus control.

Voloudakis AE, Holeva MC, Sarin LP, Bamford DH, Vargas M, Poranen MM, Tenllado F.

Methods Mol Biol. 2015;1236:255-74. doi: 10.1007/978-1-4939-1743-3_19.

PMID:
25287509
44.

Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions.

Senčilo A, Luhtanen AM, Saarijärvi M, Bamford DH, Roine E.

Environ Microbiol. 2015 Oct;17(10):3628-41. doi: 10.1111/1462-2920.12611. Epub 2014 Oct 20.

PMID:
25156651
45.

Innate responses to small interfering RNA pools inhibiting herpes simplex virus infection in astrocytoid and epithelial cells.

Paavilainen H, Romanovskaya A, Nygårdas M, Bamford DH, Poranen MM, Hukkanen V.

Innate Immun. 2015 May;21(4):349-57. doi: 10.1177/1753425914537921. Epub 2014 Jul 3.

PMID:
24996409
46.
47.

Electrostatic interactions drive the self-assembly and the transcription activity of the Pseudomonas phage ϕ6 procapsid.

Sun X, Bamford DH, Poranen MM.

J Virol. 2014 Jun;88(12):7112-6. doi: 10.1128/JVI.00467-14. Epub 2014 Apr 9.

48.

Archaeal viruses and bacteriophages: comparisons and contrasts.

Pietilä MK, Demina TA, Atanasova NS, Oksanen HM, Bamford DH.

Trends Microbiol. 2014 Jun;22(6):334-44. doi: 10.1016/j.tim.2014.02.007. Epub 2014 Mar 16. Review.

PMID:
24647075
49.

Optical tweezers reveal force plateau and internal friction in PEG-induced DNA condensation.

Ojala H, Ziedaite G, Wallin AE, Bamford DH, Hæggström E.

Eur Biophys J. 2014 Mar;43(2-3):71-9. doi: 10.1007/s00249-013-0941-x. Epub 2014 Jan 30.

PMID:
24477280
50.

Unification of the globally distributed spindle-shaped viruses of the Archaea.

Krupovic M, Quemin ER, Bamford DH, Forterre P, Prangishvili D.

J Virol. 2014 Feb;88(4):2354-8. doi: 10.1128/JVI.02941-13. Epub 2013 Dec 11.

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