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Items: 1 to 50 of 63

1.

Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra.

Rogier O, Chateigner A, Amanzougarene S, Lesage-Descauses MC, Balzergue S, Brunaud V, Caius J, Soubigou-Taconnat L, Jorge V, Segura V.

BMC Genomics. 2018 Dec 12;19(1):909. doi: 10.1186/s12864-018-5239-z.

2.

One Way to Achieve Germination: Common Molecular Mechanism Induced by Ethylene and After-Ripening in Sunflower Seeds.

Xia Q, Saux M, Ponnaiah M, Gilard F, Perreau F, Huguet S, Balzergue S, Langlade N, Bailly C, Meimoun P, Corbineau F, El-Maarouf-Bouteau H.

Int J Mol Sci. 2018 Aug 20;19(8). pii: E2464. doi: 10.3390/ijms19082464.

3.

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jul;4(7):473-484. doi: 10.1038/s41477-018-0166-1. Epub 2018 Jun 11.

PMID:
29892093
4.

Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat.

Rey E, Abrouk M, Keeble-Gagnère G, Karafiátová M, Vrána J, Balzergue S, Soubigou-Taconnat L, Brunaud V, Martin-Magniette ML, Endo TR, Bartoš J; International Wheat Genome Sequencing Consortium (IWGSC), Appels R, Doležel J.

Plant Biotechnol J. 2018 Oct;16(10):1767-1777. doi: 10.1111/pbi.12913. Epub 2018 Apr 13.

5.

Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo.

Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B.

Plant Methods. 2018 Feb 3;14:10. doi: 10.1186/s13007-018-0275-x. eCollection 2018.

6.

An Integrated "Multi-Omics" Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality.

Galland M, He D, Lounifi I, Arc E, Clément G, Balzergue S, Huguet S, Cueff G, Godin B, Collet B, Granier F, Morin H, Tran J, Valot B, Rajjou L.

Front Plant Sci. 2017 Nov 22;8:1984. doi: 10.3389/fpls.2017.01984. eCollection 2017.

7.

Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.

Richard MMS, Gratias A, Thareau V, Kim KD, Balzergue S, Joets J, Jackson SA, Geffroy V.

DNA Res. 2018 Apr 1;25(2):161-172. doi: 10.1093/dnares/dsx046.

8.

Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop.

Lloyd A, Blary A, Charif D, Charpentier C, Tran J, Balzergue S, Delannoy E, Rigaill G, Jenczewski E.

New Phytol. 2018 Jan;217(1):367-377. doi: 10.1111/nph.14836. Epub 2017 Oct 16.

9.

Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding.

Thieme M, Lanciano S, Balzergue S, Daccord N, Mirouze M, Bucher E.

Genome Biol. 2017 Jul 7;18(1):134. doi: 10.1186/s13059-017-1265-4.

10.

Responses to Hypoxia and Endoplasmic Reticulum Stress Discriminate the Development of Vitreous and Floury Endosperms of Conventional Maize (Zea mays) Inbred Lines.

Gayral M, Elmorjani K, Dalgalarrondo M, Balzergue SM, Pateyron S, Morel MH, Brunet S, Linossier L, Delluc C, Bakan B, Marion D.

Front Plant Sci. 2017 Apr 13;8:557. doi: 10.3389/fpls.2017.00557. eCollection 2017.

11.

Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula.

Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C, Bensmihen S.

J Exp Bot. 2017 Jan 1;68(3):569-583. doi: 10.1093/jxb/erw474.

12.

MtNF-YA1, A Central Transcriptional Regulator of Symbiotic Nodule Development, Is Also a Determinant of Medicago truncatula Susceptibility toward a Root Pathogen.

Rey T, Laporte P, Bonhomme M, Jardinaud MF, Huguet S, Balzergue S, Dumas B, Niebel A, Jacquet C.

Front Plant Sci. 2016 Dec 5;7:1837. eCollection 2016.

13.

Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies.

Kiefer H, Jouneau L, Campion É, Rousseau-Ralliard D, Larcher T, Martin-Magniette ML, Balzergue S, Ledevin M, Prézelin A, Chavatte-Palmer P, Heyman Y, Richard C, Le Bourhis D, Renard JP, Jammes H.

Sci Rep. 2016 Dec 13;6:38869. doi: 10.1038/srep38869.

14.

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis.

Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E.

Brief Bioinform. 2018 Jan 1;19(1):65-76. doi: 10.1093/bib/bbw092.

PMID:
27742662
15.

Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks.

Damiani I, Drain A, Guichard M, Balzergue S, Boscari A, Boyer JC, Brunaud V, Cottaz S, Rancurel C, Da Rocha M, Fizames C, Fort S, Gaillard I, Maillol V, Danchin EG, Rouached H, Samain E, Su YH, Thouin J, Touraine B, Puppo A, Frachisse JM, Pauly N, Sentenac H.

Front Plant Sci. 2016 Jun 7;7:794. doi: 10.3389/fpls.2016.00794. eCollection 2016.

16.

Transcriptome analysis highlights preformed defences and signalling pathways controlled by the prAe1 quantitative trait locus (QTL), conferring partial resistance to Aphanomyces euteiches in Medicago truncatula.

Badis Y, Bonhomme M, Lafitte C, Huguet S, Balzergue S, Dumas B, Jacquet C.

Mol Plant Pathol. 2015 Dec;16(9):973-86. doi: 10.1111/mpp.12253. Epub 2015 May 4.

PMID:
25765337
17.

In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs.

Martínez de Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A.

Nucleic Acids Res. 2015 Mar 11;43(5):2902-13. doi: 10.1093/nar/gkv119. Epub 2015 Feb 18.

18.

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response.

Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1010-7. doi: 10.1093/nar/gku1155. Epub 2014 Nov 11.

19.

Identification of phosphatin, a drug alleviating phosphate starvation responses in Arabidopsis.

Arnaud C, Clément M, Thibaud MC, Javot H, Chiarenza S, Delannoy E, Revol J, Soreau P, Balzergue S, Block MA, Maréchal E, Desnos T, Nussaume L.

Plant Physiol. 2014 Nov;166(3):1479-91. doi: 10.1104/pp.114.248112. Epub 2014 Sep 10.

20.

The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana.

Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Bérard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D.

PLoS Genet. 2014 Aug 21;10(8):e1004564. doi: 10.1371/journal.pgen.1004564. eCollection 2014 Aug.

21.

Long noncoding RNA modulates alternative splicing regulators in Arabidopsis.

Bardou F, Ariel F, Simpson CG, Romero-Barrios N, Laporte P, Balzergue S, Brown JW, Crespi M.

Dev Cell. 2014 Jul 28;30(2):166-76. doi: 10.1016/j.devcel.2014.06.017.

22.

Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum.

Pasquet JC, Chaouch S, Macadré C, Balzergue S, Huguet S, Martin-Magniette ML, Bellvert F, Deguercy X, Thareau V, Heintz D, Saindrenan P, Dufresne M.

BMC Genomics. 2014 Jul 25;15:629. doi: 10.1186/1471-2164-15-629.

23.

Compartmentation and dynamics of flavone metabolism in dry and germinated rice seeds.

Galland M, Boutet-Mercey S, Lounifi I, Godin B, Balzergue S, Grandjean O, Morin H, Perreau F, Debeaujon I, Rajjou L.

Plant Cell Physiol. 2014 Sep;55(9):1646-59. doi: 10.1093/pcp/pcu095. Epub 2014 Jul 8.

PMID:
25008975
24.

Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences.

Frei dit Frey N, Garcia AV, Bigeard J, Zaag R, Bueso E, Garmier M, Pateyron S, de Tauzia-Moreau ML, Brunaud V, Balzergue S, Colcombet J, Aubourg S, Martin-Magniette ML, Hirt H.

Genome Biol. 2014 Jun 30;15(6):R87. doi: 10.1186/gb-2014-15-6-r87.

25.

The Medicago truncatula hypermycorrhizal B9 mutant displays an altered response to phosphate and is more susceptible to Aphanomyces euteiches.

Truong HN, Thalineau E, Bonneau L, Fournier C, Potin S, Balzergue S, VAN Tuinen D, Jeandroz S, Morandi D.

Plant Cell Environ. 2015 Jan;38(1):73-88. doi: 10.1111/pce.12370. Epub 2014 Jun 2.

26.

Reactive oxygen species, abscisic acid and ethylene interact to regulate sunflower seed germination.

El-Maarouf-Bouteau H, Sajjad Y, Bazin J, Langlade N, Cristescu SM, Balzergue S, Baudouin E, Bailly C.

Plant Cell Environ. 2015 Feb;38(2):364-74. doi: 10.1111/pce.12371. Epub 2014 Jun 5.

27.

Bridging physiological and evolutionary time-scales in a gene regulatory network.

Marchand G, Huynh-Thu VA, Kane NC, Arribat S, Varès D, Rengel D, Balzergue S, Rieseberg LH, Vincourt P, Geurts P, Vignes M, Langlade NB.

New Phytol. 2014 Jul;203(2):685-96. doi: 10.1111/nph.12818. Epub 2014 May 2.

28.

Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a Medicago truncatula highly branched root mutant.

Bourion V, Martin C, de Larambergue H, Jacquin F, Aubert G, Martin-Magniette ML, Balzergue S, Lescure G, Citerne S, Lepetit M, Munier-Jolain N, Salon C, Duc G.

J Exp Bot. 2014 Jun;65(9):2365-80. doi: 10.1093/jxb/eru124. Epub 2014 Apr 4.

29.

Is gene transcription involved in seed dry after-ripening?

Meimoun P, Mordret E, Langlade NB, Balzergue S, Arribat S, Bailly C, El-Maarouf-Bouteau H.

PLoS One. 2014 Jan 20;9(1):e86442. doi: 10.1371/journal.pone.0086442. eCollection 2014.

30.

The symbiotic transcription factor MtEFD and cytokinins are positively acting in the Medicago truncatula and Ralstonia solanacearum pathogenic interaction.

Moreau S, Fromentin J, Vailleau F, Vernié T, Huguet S, Balzergue S, Frugier F, Gamas P, Jardinaud MF.

New Phytol. 2014 Mar;201(4):1343-57. doi: 10.1111/nph.12636. Epub 2013 Dec 11.

31.

The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.

Djafi N, Vergnolle C, Cantrel C, Wietrzyñski W, Delage E, Cochet F, Puyaubert J, Soubigou-Taconnat L, Gey D, Collin S, Balzergue S, Zachowski A, Ruelland E.

Front Plant Sci. 2013 Aug 8;4:307. doi: 10.3389/fpls.2013.00307. eCollection 2013.

32.

NFP, a LysM protein controlling Nod factor perception, also intervenes in Medicago truncatula resistance to pathogens.

Rey T, Nars A, Bonhomme M, Bottin A, Huguet S, Balzergue S, Jardinaud MF, Bono JJ, Cullimore J, Dumas B, Gough C, Jacquet C.

New Phytol. 2013 May;198(3):875-86. doi: 10.1111/nph.12198. Epub 2013 Feb 25.

33.

A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments.

Rengel D, Arribat S, Maury P, Martin-Magniette ML, Hourlier T, Laporte M, Varès D, Carrère S, Grieu P, Balzergue S, Gouzy J, Vincourt P, Langlade NB.

PLoS One. 2012;7(10):e45249. doi: 10.1371/journal.pone.0045249. Epub 2012 Oct 8.

34.

Live imaging of DORNRÖSCHEN and DORNRÖSCHEN-LIKE promoter activity reveals dynamic changes in cell identity at the microcallus surface of Arabidopsis embryonic suspensions.

Cole M, Jacobs B, Soubigou-Taconnat L, Balzergue S, Renou JP, Chandler JW, Werr W.

Plant Cell Rep. 2013 Jan;32(1):45-59. doi: 10.1007/s00299-012-1339-4. Epub 2012 Sep 26.

PMID:
23011125
35.

Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis.

Bourbousse C, Ahmed I, Roudier F, Zabulon G, Blondet E, Balzergue S, Colot V, Bowler C, Barneche F.

PLoS Genet. 2012;8(7):e1002825. doi: 10.1371/journal.pgen.1002825. Epub 2012 Jul 19.

36.

Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification.

Eudes A, George A, Mukerjee P, Kim JS, Pollet B, Benke PI, Yang F, Mitra P, Sun L, Cetinkol OP, Chabout S, Mouille G, Soubigou-Taconnat L, Balzergue S, Singh S, Holmes BM, Mukhopadhyay A, Keasling JD, Simmons BA, Lapierre C, Ralph J, Loqué D.

Plant Biotechnol J. 2012 Jun;10(5):609-20. doi: 10.1111/j.1467-7652.2012.00692.x. Epub 2012 Mar 28.

37.

Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures.

Cubillos FA, Yansouni J, Khalili H, Balzergue S, Elftieh S, Martin-Magniette ML, Serrand Y, Lepiniec L, Baud S, Dubreucq B, Renou JP, Camilleri C, Loudet O.

BMC Genomics. 2012 Mar 27;13:117. doi: 10.1186/1471-2164-13-117.

38.

Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana.

Junker A, Mönke G, Rutten T, Keilwagen J, Seifert M, Thi TM, Renou JP, Balzergue S, Viehöver P, Hähnel U, Ludwig-Müller J, Altschmied L, Conrad U, Weisshaar B, Bäumlein H.

Plant J. 2012 Aug;71(3):427-42. doi: 10.1111/j.1365-313X.2012.04999.x. Epub 2012 May 30.

39.

Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes.

Damiani I, Baldacci-Cresp F, Hopkins J, Andrio E, Balzergue S, Lecomte P, Puppo A, Abad P, Favery B, Hérouart D.

New Phytol. 2012 Apr;194(2):511-22. doi: 10.1111/j.1469-8137.2011.04046.x. Epub 2012 Feb 23.

40.

Genomic approach to study floral development genes in Rosa sp.

Dubois A, Remay A, Raymond O, Balzergue S, Chauvet A, Maene M, Pécrix Y, Yang SH, Jeauffre J, Thouroude T, Boltz V, Martin-Magniette ML, Janczarski S, Legeai F, Renou JP, Vergne P, Le Bris M, Foucher F, Bendahmane M.

PLoS One. 2011;6(12):e28455. doi: 10.1371/journal.pone.0028455. Epub 2011 Dec 14.

41.

RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.).

Pont C, Murat F, Confolent C, Balzergue S, Salse J.

Genome Biol. 2011 Dec 2;12(12):R119. doi: 10.1186/gb-2011-12-12-r119.

42.

Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene.

Yu Y, Streubel J, Balzergue S, Champion A, Boch J, Koebnik R, Feng J, Verdier V, Szurek B.

Mol Plant Microbe Interact. 2011 Sep;24(9):1102-13. doi: 10.1094/MPMI-11-10-0254.

43.

Targeted mRNA oxidation regulates sunflower seed dormancy alleviation during dry after-ripening.

Bazin J, Langlade N, Vincourt P, Arribat S, Balzergue S, El-Maarouf-Bouteau H, Bailly C.

Plant Cell. 2011 Jun;23(6):2196-208. doi: 10.1105/tpc.111.086694. Epub 2011 Jun 3.

44.

Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression.

Tamasloukht B, Wong Quai Lam MS, Martinez Y, Tozo K, Barbier O, Jourda C, Jauneau A, Borderies G, Balzergue S, Renou JP, Huguet S, Martinant JP, Tatout C, Lapierre C, Barrière Y, Goffner D, Pichon M.

J Exp Bot. 2011 Jul;62(11):3837-48. doi: 10.1093/jxb/err077. Epub 2011 Apr 14.

45.

Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems.

Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cézard L, Le Bris P, Borrega N, Hervé J, Blondet E, Balzergue S, Lapierre C, Jouanin L.

Plant Cell. 2011 Mar;23(3):1124-37. doi: 10.1105/tpc.110.082792. Epub 2011 Mar 29.

46.

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.

Cohen D, Bogeat-Triboulot MB, Tisserant E, Balzergue S, Martin-Magniette ML, Lelandais G, Ningre N, Renou JP, Tamby JP, Le Thiec D, Hummel I.

BMC Genomics. 2010 Nov 12;11:630. doi: 10.1186/1471-2164-11-630.

47.

Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.).

Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, Oury FX, Ward J, Boros D, Gebruers K, Delcour JA, Courtin CM, Bedo Z, Saulnier L, Guillon F, Balzergue S, Shewry PR, Feuillet C, Charmet G, Salse J.

Funct Integr Genomics. 2011 Mar;11(1):71-83. doi: 10.1007/s10142-010-0183-2. Epub 2010 Aug 10.

PMID:
20697765
48.

Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse.

Chadi S, Young R, Le Guillou S, Tilly G, Bitton F, Martin-Magniette ML, Soubigou-Taconnat L, Balzergue S, Vilotte M, Peyre C, Passet B, Béringue V, Renou JP, Le Provost F, Laude H, Vilotte JL.

BMC Genomics. 2010 Jul 22;11:448. doi: 10.1186/1471-2164-11-448.

49.

Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids.

Chagué V, Just J, Mestiri I, Balzergue S, Tanguy AM, Huneau C, Huteau V, Belcram H, Coriton O, Jahier J, Chalhoub B.

New Phytol. 2010 Sep;187(4):1181-94. doi: 10.1111/j.1469-8137.2010.03339.x. Epub 2010 Jun 25.

50.

Multilevel regulation and signalling processes associated with adaptation to terminal drought in wild emmer wheat.

Krugman T, Chagué V, Peleg Z, Balzergue S, Just J, Korol AB, Nevo E, Saranga Y, Chalhoub B, Fahima T.

Funct Integr Genomics. 2010 May;10(2):167-86. doi: 10.1007/s10142-010-0166-3. Epub 2010 Mar 24.

PMID:
20333536

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