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Items: 48

1.

Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity.

Baltrus DA, Cuomo CA, Dennehy JJ, Dunning Hotopp JC, Maresca JA, Newton ILG, Rasko DA, Rokas A, Roux S, Stajich JE.

Microbiol Resour Announc. 2019 Sep 5;8(36). pii: e00954-19. doi: 10.1128/MRA.00954-19.

2.

A Novel, Highly Related Jumbo Family of Bacteriophages That Were Isolated Against Erwinia.

Sharma R, Pielstick BA, Bell KA, Nieman TB, Stubbs OA, Yeates EL, Baltrus DA, Grose JH.

Front Microbiol. 2019 Jul 23;10:1533. doi: 10.3389/fmicb.2019.01533. eCollection 2019.

3.

Complete Genome Sequence of Luteibacter pinisoli MAH-14.

Baltrus DA, Clark M, Inderbitzin P, Pignatta D, Knight-Connoni V, Arnold AE.

Microbiol Resour Announc. 2019 Jul 18;8(29). pii: e00774-19. doi: 10.1128/MRA.00774-19.

4.
5.

Just the Two of Us? A Family of Pseudomonas Megaplasmids Offers a Rare Glimpse into the Evolution of Large Mobile Elements.

Smith BA, Leligdon C, Baltrus DA.

Genome Biol Evol. 2019 Apr 1;11(4):1192-1206. doi: 10.1093/gbe/evz066.

6.

Native and Invading Yellow Starthistle (Centaurea solstitialis) Microbiomes Differ in Composition and Diversity of Bacteria.

Lu-Irving P, Harenčár JG, Sounart H, Welles SR, Swope SM, Baltrus DA, Dlugosch KM.

mSphere. 2019 Mar 6;4(2). pii: e00088-19. doi: 10.1128/mSphere.00088-19.

7.

The Extended Genotype: To What Extent? A Comment on Carthey et al.

Morimoto J, Baltrus DA.

Trends Ecol Evol. 2019 Mar;34(3):186-187. doi: 10.1016/j.tree.2018.12.010. Epub 2019 Jan 21. No abstract available.

PMID:
30679064
8.

Genome Sequences of Nine Erwinia amylovora Bacteriophages.

Sharma R, Berg JA, Beatty NJ, Choi MC, Cowger AE, Cozzens BJR, Duncan SG, Fajardo CP, Ferguson HP, Galbraith T, Herring JA, Hoj TR, Durrant JL, Hyde JR, Jensen GL, Ke SY, Killpack S, Kruger JL, Lawrence EEK, Nwosu IO, Tam TC, Thompson DW, Tueller JA, Ward MEH, Webb CJ, Wood ME, Yeates EL, Baltrus DA, Breakwell DP, Hope S, Grose JH.

Microbiol Resour Announc. 2018 Oct 11;7(14). pii: e00944-18. doi: 10.1128/MRA.00944-18. eCollection 2018 Oct.

9.

Quantifying Re-association of a Facultative Endohyphal Bacterium with a Filamentous Fungus.

Baltrus DA, Spraker J, Arnold AE.

Methods Mol Biol. 2018;1848:1-11. doi: 10.1007/978-1-4939-8724-5_1.

PMID:
30182224
10.

Localized recombination drives diversification of killing spectra for phage-derived syringacins.

Baltrus DA, Clark M, Smith C, Hockett KL.

ISME J. 2019 Feb;13(2):237-249. doi: 10.1038/s41396-018-0261-3. Epub 2018 Aug 31.

11.

Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies.

Fitzpatrick CR, Lu-Irving P, Copeland J, Guttman DS, Wang PW, Baltrus DA, Dlugosch KM, Johnson MTJ.

Microbiome. 2018 Aug 18;6(1):144. doi: 10.1186/s40168-018-0534-0.

12.

Understanding genomic diversity in Pseudomonas syringae throughout the forest and on the trees.

Baltrus DA, Orth KN.

New Phytol. 2018 Jul;219(2):482-484. doi: 10.1111/nph.15269. No abstract available.

13.

Evolutionary Plasticity of AmrZ Regulation in Pseudomonas.

Baltrus DA, Dougherty K, Diaz B, Murillo R.

mSphere. 2018 Apr 18;3(2). pii: e00132-18. doi: 10.1128/mSphere.00132-18. Print 2018 Apr 25.

14.

Entomopathogenicity to Two Hemipteran Insects Is Common but Variable across Epiphytic Pseudomonas syringae Strains.

Smee MR, Baltrus DA, Hendry TA.

Front Plant Sci. 2017 Dec 19;8:2149. doi: 10.3389/fpls.2017.02149. eCollection 2017.

15.

Complete Genome Sequence of the Predatory Bacterium Ensifer adhaerens Casida A.

Williams LE, Baltrus DA, O'Donnell SD, Skelly TJ, Martin MO.

Genome Announc. 2017 Nov 22;5(47). pii: e01344-17. doi: 10.1128/genomeA.01344-17.

16.

Bacterial Endosymbionts: Master Modulators of Fungal Phenotypes.

Araldi-Brondolo SJ, Spraker J, Shaffer JP, Woytenko EH, Baltrus DA, Gallery RE, Arnold AE.

Microbiol Spectr. 2017 Sep;5(5). doi: 10.1128/microbiolspec.FUNK-0056-2016. Review.

PMID:
28936944
17.

Adaptation, specialization, and coevolution within phytobiomes.

Baltrus DA.

Curr Opin Plant Biol. 2017 Aug;38:109-116. doi: 10.1016/j.pbi.2017.04.023. Epub 2017 May 22. Review.

PMID:
28545003
18.

An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae).

Shaffer JP, U'Ren JM, Gallery RE, Baltrus DA, Arnold AE.

Front Microbiol. 2017 Mar 14;8:350. doi: 10.3389/fmicb.2017.00350. eCollection 2017.

19.

Absence of genome reduction in diverse, facultative endohyphal bacteria.

Baltrus DA, Dougherty K, Arendt KR, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Arnold AE.

Microb Genom. 2017 Feb 28;3(2):e000101. doi: 10.1099/mgen.0.000101. eCollection 2017 Feb.

20.

Use of the Soft-agar Overlay Technique to Screen for Bacterially Produced Inhibitory Compounds.

Hockett KL, Baltrus DA.

J Vis Exp. 2017 Jan 14;(119). doi: 10.3791/55064.

21.

Evolution, genomics and epidemiology of Pseudomonas syringae: Challenges in Bacterial Molecular Plant Pathology.

Baltrus DA, McCann HC, Guttman DS.

Mol Plant Pathol. 2017 Jan;18(1):152-168. doi: 10.1111/mpp.12506. Epub 2016 Nov 25. Review.

22.

A highly infective plant-associated bacterium influences reproductive rates in pea aphids.

Hendry TA, Clark KJ, Baltrus DA.

R Soc Open Sci. 2016 Feb 10;3(2):150478. doi: 10.1098/rsos.150478. eCollection 2016 Feb.

23.

Isolation of Endohyphal Bacteria from Foliar Ascomycota and In Vitro Establishment of Their Symbiotic Associations.

Arendt KR, Hockett KL, Araldi-Brondolo SJ, Baltrus DA, Arnold AE.

Appl Environ Microbiol. 2016 May 2;82(10):2943-2949. doi: 10.1128/AEM.00452-16. Print 2016 May 15.

24.

Divorcing Strain Classification from Species Names.

Baltrus DA.

Trends Microbiol. 2016 Jun;24(6):431-439. doi: 10.1016/j.tim.2016.02.004. Epub 2016 Mar 2. Review.

PMID:
26947794
25.

Independent Co-Option of a Tailed Bacteriophage into a Killing Complex in Pseudomonas.

Hockett KL, Renner T, Baltrus DA.

MBio. 2015 Aug 11;6(4):e00452. doi: 10.1128/mBio.00452-15.

26.

The Facultative Symbiont Rickettsia Protects an Invasive Whitefly against Entomopathogenic Pseudomonas syringae Strains.

Hendry TA, Hunter MS, Baltrus DA.

Appl Environ Microbiol. 2014 Dec;80(23):7161-8. doi: 10.1128/AEM.02447-14. Epub 2014 Sep 12.

27.

Multiple phenotypic changes associated with large-scale horizontal gene transfer.

Dougherty K, Smith BA, Moore AF, Maitland S, Fanger C, Murillo R, Baltrus DA.

PLoS One. 2014 Jul 21;9(7):e102170. doi: 10.1371/journal.pone.0102170. eCollection 2014.

28.

Complete Genome Sequence of the Highly Transformable Pseudomonas stutzeri Strain 28a24.

Smith BA, Dougherty KM, Baltrus DA.

Genome Announc. 2014 Jun 5;2(3). pii: e00543-14. doi: 10.1128/genomeA.00543-14.

29.

Pseudomonas syringae CC1557: a highly virulent strain with an unusually small type III effector repertoire that includes a novel effector.

Hockett KL, Nishimura MT, Karlsrud E, Dougherty K, Baltrus DA.

Mol Plant Microbe Interact. 2014 Sep;27(9):923-32. doi: 10.1094/MPMI-11-13-0354-R.

30.

Bigger is not always better: transmission and fitness burden of ∼1MB Pseudomonas syringae megaplasmid pMPPla107.

Romanchuk A, Jones CD, Karkare K, Moore A, Smith BA, Jones C, Dougherty K, Baltrus DA.

Plasmid. 2014 May;73:16-25. doi: 10.1016/j.plasmid.2014.04.002. Epub 2014 May 2.

PMID:
24792221
31.

The Pseudomonas viridiflava phylogroups in the P. syringae species complex are characterized by genetic variability and phenotypic plasticity of pathogenicity-related traits.

Bartoli C, Berge O, Monteil CL, Guilbaud C, Balestra GM, Varvaro L, Jones C, Dangl JL, Baltrus DA, Sands DC, Morris CE.

Environ Microbiol. 2014 Jul;16(7):2301-15. doi: 10.1111/1462-2920.12433. Epub 2014 Mar 27.

PMID:
24612372
32.

Draft Genome Sequences of a Phylogenetically Diverse Suite of Pseudomonas syringae Strains from Multiple Source Populations.

Baltrus DA, Yourstone S, Lind A, Guilbaud C, Sands DC, Jones CD, Morris CE, Dangl JL.

Genome Announc. 2014 Jan 23;2(1). pii: e01195-13. doi: 10.1128/genomeA.01195-13.

33.

Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny.

Mucyn TS, Yourstone S, Lind AL, Biswas S, Nishimura MT, Baltrus DA, Cumbie JS, Chang JH, Jones CD, Dangl JL, Grant SR.

PLoS Pathog. 2014 Jan;10(1):e1003807. doi: 10.1371/journal.ppat.1003807. Epub 2014 Jan 2.

34.

Incongruence between multi-locus sequence analysis (MLSA) and whole-genome-based phylogenies: Pseudomonas syringae pathovar pisi as a cautionary tale.

Baltrus DA, Dougherty K, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Foster JT.

Mol Plant Pathol. 2014 Jun;15(5):461-5. doi: 10.1111/mpp.12103. Epub 2014 Jan 6.

35.

Exploring the costs of horizontal gene transfer.

Baltrus DA.

Trends Ecol Evol. 2013 Aug;28(8):489-95. doi: 10.1016/j.tree.2013.04.002. Epub 2013 May 22. Review.

PMID:
23706556
36.

Comparative genomics of multiple strains of Pseudomonas cannabina pv. alisalensis, a potential model pathogen of both monocots and dicots.

Sarris PF, Trantas EA, Baltrus DA, Bull CT, Wechter WP, Yan S, Ververidis F, Almeida NF, Jones CD, Dangl JL, Panopoulos NJ, Vinatzer BA, Goumas DE.

PLoS One. 2013;8(3):e59366. doi: 10.1371/journal.pone.0059366. Epub 2013 Mar 28.

37.

The molecular basis of host specialization in bean pathovars of Pseudomonas syringae.

Baltrus DA, Nishimura MT, Dougherty KM, Biswas S, Mukhtar MS, Vicente J, Holub EB, Dangl JL.

Mol Plant Microbe Interact. 2012 Jul;25(7):877-88. doi: 10.1094/MPMI-08-11-0218.

38.

Draft genome sequence of plant growth-promoting rhizobium Mesorhizobium amorphae, isolated from zinc-lead mine tailings.

Hao X, Lin Y, Johnstone L, Baltrus DA, Miller SJ, Wei G, Rensing C.

J Bacteriol. 2012 Feb;194(3):736-7. doi: 10.1128/JB.06475-11.

39.

Draft genome of Streptomyces zinciresistens K42, a novel metal-resistant species isolated from copper-zinc mine tailings.

Lin Y, Hao X, Johnstone L, Miller SJ, Baltrus DA, Rensing C, Wei G.

J Bacteriol. 2011 Nov;193(22):6408-9. doi: 10.1128/JB.06165-11.

40.

Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates.

Baltrus DA, Nishimura MT, Romanchuk A, Chang JH, Mukhtar MS, Cherkis K, Roach J, Grant SR, Jones CD, Dangl JL.

PLoS Pathog. 2011 Jul;7(7):e1002132. doi: 10.1371/journal.ppat.1002132. Epub 2011 Jul 14.

41.

Helicobacter pylori Genome Plasticity.

Baltrus DA, Blaser MJ, Guillemin K.

Genome Dyn. 2009;6:75-90. doi: 10.1159/000235764. Epub 2009 Aug 19.

PMID:
19696495
42.

De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.

Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD, Dangl JL.

Genome Res. 2009 Feb;19(2):294-305. doi: 10.1101/gr.083311.108. Epub 2008 Nov 17.

43.

The complete genome sequence of Helicobacter pylori strain G27.

Baltrus DA, Amieva MR, Covacci A, Lowe TM, Merrell DS, Ottemann KM, Stein M, Salama NR, Guillemin K.

J Bacteriol. 2009 Jan;191(1):447-8. doi: 10.1128/JB.01416-08. Epub 2008 Oct 24.

44.

Natural transformation increases the rate of adaptation in the human pathogen Helicobacter pylori.

Baltrus DA, Guillemin K, Phillips PC.

Evolution. 2008 Jan;62(1):39-49. Epub 2007 Nov 1.

PMID:
17976191
45.

Extending assembly of short DNA sequences to handle error.

Jeck WR, Reinhardt JA, Baltrus DA, Hickenbotham MT, Magrini V, Mardis ER, Dangl JL, Jones CD.

Bioinformatics. 2007 Nov 1;23(21):2942-4. Epub 2007 Sep 24.

PMID:
17893086
46.

Global virulence regulation networks in phytopathogenic bacteria.

Mole BM, Baltrus DA, Dangl JL, Grant SR.

Trends Microbiol. 2007 Aug;15(8):363-71. Epub 2007 Jul 12. Review.

PMID:
17627825
47.

Multiple phases of competence occur during the Helicobacter pylori growth cycle.

Baltrus DA, Guillemin K.

FEMS Microbiol Lett. 2006 Feb;255(1):148-55.

48.

Genome duplication, subfunction partitioning, and lineage divergence: Sox9 in stickleback and zebrafish.

Cresko WA, Yan YL, Baltrus DA, Amores A, Singer A, Rodríguez-Marí A, Postlethwait JH.

Dev Dyn. 2003 Nov;228(3):480-9.

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