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Items: 13

1.

ZFN, TALEN and CRISPR-Cas9 mediated homology directed gene insertion in Arabidopsis: A disconnect between somatic and germinal cells.

Shan Q, Baltes NJ, Atkins P, Kirkland ER, Zhang Y, Baller JA, Lowder LG, Malzahn AA, Haugner JC 3rd, Seelig B, Voytas DF, Qi Y.

J Genet Genomics. 2018 Dec 20;45(12):681-684. doi: 10.1016/j.jgg.2018.07.011. Epub 2018 Oct 10. No abstract available.

PMID:
30598393
2.

Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF.

Dale JL, Beckman KB, Willett JLE, Nilson JL, Palani NP, Baller JA, Hauge A, Gohl DM, Erickson R, Manias DA, Sadowsky MJ, Dunny GM.

mSystems. 2018 Sep 11;3(5). pii: e00062-18. doi: 10.1128/mSystems.00062-18. eCollection 2018 Sep-Oct.

3.

The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease.

Pragman AA, Lyu T, Baller JA, Gould TJ, Kelly RF, Reilly CS, Isaacson RE, Wendt CH.

Microbiome. 2018 Jan 9;6(1):7. doi: 10.1186/s40168-017-0381-4.

4.

Histone H2AX and the small RNA pathway modulate both non-homologous end-joining and homologous recombination in plants.

Qi Y, Zhang Y, Baller JA, Voytas DF.

Mutat Res. 2016 Jan;783:9-14. doi: 10.1016/j.mrfmmm.2015.12.002. Epub 2015 Dec 4.

PMID:
26687994
5.

Retrotransposons. An RNA polymerase III subunit determines sites of retrotransposon integration.

Bridier-Nahmias A, Tchalikian-Cosson A, Baller JA, Menouni R, Fayol H, Flores A, Saïb A, Werner M, Voytas DF, Lesage P.

Science. 2015 May 1;348(6234):585-8. doi: 10.1126/science.1259114.

6.

Origin replication complex binding, nucleosome depletion patterns, and a primary sequence motif can predict origins of replication in a genome with epigenetic centromeres.

Tsai HJ, Baller JA, Liachko I, Koren A, Burrack LS, Hickman MA, Thevandavakkam MA, Rusche LN, Berman J.

MBio. 2014 Sep 2;5(5):e01703-14. doi: 10.1128/mBio.01703-14.

7.

Silencing is noisy: population and cell level noise in telomere-adjacent genes is dependent on telomere position and sir2.

Anderson MZ, Gerstein AC, Wigen L, Baller JA, Berman J.

PLoS Genet. 2014 Jul 24;10(7):e1004436. doi: 10.1371/journal.pgen.1004436. eCollection 2014 Jul.

8.

Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways.

Qi Y, Zhang Y, Zhang F, Baller JA, Cleland SC, Ryu Y, Starker CG, Voytas DF.

Genome Res. 2013 Mar;23(3):547-54. doi: 10.1101/gr.145557.112. Epub 2013 Jan 2.

9.

Transcription activator-like effector nucleases enable efficient plant genome engineering.

Zhang Y, Zhang F, Li X, Baller JA, Qi Y, Starker CG, Bogdanove AJ, Voytas DF.

Plant Physiol. 2013 Jan;161(1):20-7. doi: 10.1104/pp.112.205179. Epub 2012 Nov 2.

10.

The three clades of the telomere-associated TLO gene family of Candida albicans have different splicing, localization, and expression features.

Anderson MZ, Baller JA, Dulmage K, Wigen L, Berman J.

Eukaryot Cell. 2012 Oct;11(10):1268-75. doi: 10.1128/EC.00230-12. Epub 2012 Aug 24.

11.

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon.

Baller JA, Gao J, Stamenova R, Curcio MJ, Voytas DF.

Genome Res. 2012 Apr;22(4):704-13. doi: 10.1101/gr.129585.111. Epub 2012 Jan 4.

12.

Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5.

Baller JA, Gao J, Voytas DF.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20351-6. doi: 10.1073/pnas.1103665108. Epub 2011 Jul 25.

13.

Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.

Cermak T, Doyle EL, Christian M, Wang L, Zhang Y, Schmidt C, Baller JA, Somia NV, Bogdanove AJ, Voytas DF.

Nucleic Acids Res. 2011 Jul;39(12):e82. doi: 10.1093/nar/gkr218. Epub 2011 Apr 14. Erratum in: Nucleic Acids Res. 2011 Sep 1;39(17):7879.

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