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Items: 1 to 50 of 64

1.

A Prospective Analysis of Genetic Variants Associated with Human Lifespan.

Wright KM, Rand KA, Kermany A, Noto K, Curtis D, Garrigan D, Slinkov D, Dorfman I, Granka JM, Byrnes J, Myres N, Ball CA, Ruby JG.

G3 (Bethesda). 2019 Sep 4;9(9):2863-2878. doi: 10.1534/g3.119.400448.

2.

Prognostic Utility of Stress Testing and Cardiac Biomarkers in Menopausal Women at Low to Intermediate Risk for Coronary ARTery Disease (SMART Study): 5-Year Outcome.

Abdelmoneim SS, Ball CA, Mantovani F, Hagen ME, Eifert-Rain S, Wilansky S, Castello R, Pellikka PA, Best PJM, Mulvagh SL.

J Womens Health (Larchmt). 2018 May;27(5):542-551. doi: 10.1089/jwh.2017.6506. Epub 2018 Apr 19.

PMID:
29672210
3.

Effect of Body Mass Index on Exercise Capacity in Patients With Hypertrophic Cardiomyopathy.

Larsen CM, Ball CA, Hebl VB, Ong KC, Siontis KC, Olson TP, Ackerman MJ, Ommen SR, Allison TG, Geske JB.

Am J Cardiol. 2018 Jan 1;121(1):100-106. doi: 10.1016/j.amjcard.2017.09.026. Epub 2017 Oct 12.

PMID:
29126582
4.

Clustering of 770,000 genomes reveals post-colonial population structure of North America.

Han E, Carbonetto P, Curtis RE, Wang Y, Granka JM, Byrnes J, Noto K, Kermany AR, Myres NM, Barber MJ, Rand KA, Song S, Roman T, Battat E, Elyashiv E, Guturu H, Hong EL, Chahine KG, Ball CA.

Nat Commun. 2017 Feb 7;8:14238. doi: 10.1038/ncomms14238.

5.

Detection of Carotid Atherosclerotic Plaque Neovascularization Using Contrast Enhanced Ultrasound: A Systematic Review and Meta-Analysis of Diagnostic Accuracy Studies.

Huang R, Abdelmoneim SS, Ball CA, Nhola LF, Farrell AM, Feinstein S, Mulvagh SL.

J Am Soc Echocardiogr. 2016 Jun;29(6):491-502. doi: 10.1016/j.echo.2016.02.012. Epub 2016 Mar 30. Review.

PMID:
27038513
6.

Evaluating Violent Person Management Training for Medical Students in an Emergency Medicine Clerkship.

Ball CA, Kurtz AM, Reed T.

South Med J. 2015 Sep;108(9):520-3. doi: 10.14423/SMJ.0000000000000337.

PMID:
26332475
7.

23-year-old woman with syncope.

Ball CA, Hegerova LT, Nkomo VT.

Mayo Clin Proc. 2014 Oct;89(10):e93-7. doi: 10.1016/j.mayocp.2014.02.021. Review. No abstract available.

PMID:
25282437
8.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD, Altman T.

Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26. Erratum in: Nucleic Acids Res. 2014 Oct 29;42(19):12330.

9.

Long-term follow-up of patients on drug holiday from bisphosphonates: real-world setting.

Chiha M, Myers LE, Ball CA, Sinacore JM, Camacho PM.

Endocr Pract. 2013 Nov-Dec;19(6):989-94. doi: 10.4158/EP12425.OR.

PMID:
24013976
10.

Data standards for Omics data: the basis of data sharing and reuse.

Chervitz SA, Deutsch EW, Field D, Parkinson H, Quackenbush J, Rocca-Serra P, Sansone SA, Stoeckert CJ Jr, Taylor CF, Taylor R, Ball CA.

Methods Mol Biol. 2011;719:31-69. doi: 10.1007/978-1-61779-027-0_2. Review.

11.

Annotare--a tool for annotating high-throughput biomedical investigations and resulting data.

Shankar R, Parkinson H, Burdett T, Hastings E, Liu J, Miller M, Srinivasa R, White J, Brazma A, Sherlock G, Stoeckert CJ Jr, Ball CA.

Bioinformatics. 2010 Oct 1;26(19):2470-1. doi: 10.1093/bioinformatics/btq462. Epub 2010 Aug 23.

12.

TB database 2010: overview and update.

Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK.

Tuberculosis (Edinb). 2010 Jul;90(4):225-35. doi: 10.1016/j.tube.2010.03.010. Epub 2010 May 20. Review.

PMID:
20488753
14.

Repeatability of published microarray gene expression analyses.

Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V.

Nat Genet. 2009 Feb;41(2):149-55. doi: 10.1038/ng.295. Epub 2008 Jan 28.

PMID:
19174838
15.

Implementation of GenePattern within the Stanford Microarray Database.

Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA.

Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. doi: 10.1093/nar/gkn786. Epub 2008 Oct 25.

16.

TB database: an integrated platform for tuberculosis research.

Reddy TB, Riley R, Wymore F, Montgomery P, DeCaprio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoolnik GK.

Nucleic Acids Res. 2009 Jan;37(Database issue):D499-508. doi: 10.1093/nar/gkn652. Epub 2008 Oct 3.

17.

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, Fostel J, Ghazal P, Gibson F, Gray T, Grimes G, Hancock JM, Hardy NW, Hermjakob H, Julian RK Jr, Kane M, Kettner C, Kinsinger C, Kolker E, Kuiper M, Le Novère N, Leebens-Mack J, Lewis SE, Lord P, Mallon AM, Marthandan N, Masuya H, McNally R, Mehrle A, Morrison N, Orchard S, Quackenbush J, Reecy JM, Robertson DG, Rocca-Serra P, Rodriguez H, Rosenfelder H, Santoyo-Lopez J, Scheuermann RH, Schober D, Smith B, Snape J, Stoeckert CJ Jr, Tipton K, Sterk P, Untergasser A, Vandesompele J, Wiemann S.

Nat Biotechnol. 2008 Aug;26(8):889-96. doi: 10.1038/nbt.1411. No abstract available.

18.

Domain-specific data sharing in neuroscience: what do we have to learn from each other?

Van Horn JD, Ball CA.

Neuroinformatics. 2008 Summer;6(2):117-21. doi: 10.1007/s12021-008-9019-9. Epub 2008 May 13. Review.

19.

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).

Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen JH, Daian F, Dauga D, Davidson DR, Gimenez G, Goo YA, Grimmond S, Henrich T, Herrmann BG, Johnson MH, Korb M, Mills JC, Oudes AJ, Parkinson HE, Pascal LE, Pollet N, Quackenbush J, Ramialison M, Ringwald M, Salgado D, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Warford A, Wilkinson DG, Zhou Y, Zon LI, Liu AY, True LD.

Nat Biotechnol. 2008 Mar;26(3):305-12. doi: 10.1038/nbt1391.

20.

The XBabelPhish MAGE-ML and XML translator.

Maier D, Wymore F, Sherlock G, Ball CA.

BMC Bioinformatics. 2008 Jan 18;9:28. doi: 10.1186/1471-2105-9-28.

21.

The Stanford Tissue Microarray Database.

Marinelli RJ, Montgomery K, Liu CL, Shah NH, Prapong W, Nitzberg M, Zachariah ZK, Sherlock GJ, Natkunam Y, West RB, van de Rijn M, Brown PO, Ball CA.

Nucleic Acids Res. 2008 Jan;36(Database issue):D871-7. Epub 2007 Nov 7.

22.

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.

Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK Jr, Laursen K, Oliver SG, Paton NW, Sansone SA, Sarkans U, Stoeckert CJ Jr, Taylor CF, Whetzel PL, White JA, Spellman P, Pizarro A.

Nat Biotechnol. 2007 Oct;25(10):1127-33.

PMID:
17921998
23.

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JH, Ball CA, Sherlock G.

BMC Bioinformatics. 2007 Sep 13;8:338.

24.

The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

Demeter J, Beauheim C, Gollub J, Hernandez-Boussard T, Jin H, Maier D, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G, Ball CA.

Nucleic Acids Res. 2007 Jan;35(Database issue):D766-70. Epub 2006 Dec 20.

25.

Are we stuck in the standards?

Ball CA.

Nat Biotechnol. 2006 Nov;24(11):1374-6.

PMID:
17093487
26.

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A.

BMC Bioinformatics. 2006 Nov 6;7:489.

27.

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.

Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Cherry JM; Saccharomyces Genome Database Project.

Yeast. 2006 Sep;23(12):857-65.

28.

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, Mills JC, Oudes A, Parkinson HE, Pascal LE, Quackenbush J, Ramialison M, Ringwald M, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Zhou Y, Liu AY, True LD.

OMICS. 2006 Summer;10(2):205-8. Review.

PMID:
16901227
29.

MGED standards: work in progress.

Ball CA, Brazma A.

OMICS. 2006 Summer;10(2):138-44. Review.

PMID:
16901218
30.

The Stanford Microarray Database: a user's guide.

Gollub J, Ball CA, Sherlock G.

Methods Mol Biol. 2006;338:191-208.

PMID:
16888360
31.

Autonomy, justice, and disability.

Ball CA.

UCLA Law Rev. 2000 Feb;47(3):599-651.

PMID:
16273682
32.

Storage and retrieval of microarray data and open source microarray database software.

Sherlock G, Ball CA.

Mol Biotechnol. 2005 Jul;30(3):239-51. Review.

PMID:
15988049
33.

The Stanford Microarray Database accommodates additional microarray platforms and data formats.

Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2.

34.

Caryoscope: an Open Source Java application for viewing microarray data in a genomic context.

Awad IA, Rees CA, Hernandez-Boussard T, Ball CA, Sherlock G.

BMC Bioinformatics. 2004 Oct 15;5:151.

35.

Submission of microarray data to public repositories.

Ball CA, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, Taylor R, White J, Winegarden N.

PLoS Biol. 2004 Sep;2(9):E317. Epub 2004 Aug 31. No abstract available.

36.

Funding high-throughput data sharing.

Ball CA, Sherlock G, Brazma A.

Nat Biotechnol. 2004 Sep;22(9):1179-83. No abstract available.

PMID:
15340487
37.

The novel marker, DOG1, is expressed ubiquitously in gastrointestinal stromal tumors irrespective of KIT or PDGFRA mutation status.

West RB, Corless CL, Chen X, Rubin BP, Subramanian S, Montgomery K, Zhu S, Ball CA, Nielsen TO, Patel R, Goldblum JR, Brown PO, Heinrich MC, van de Rijn M.

Am J Pathol. 2004 Jul;165(1):107-13.

38.

Microarray databases: storage and retrieval of microarray data.

Sherlock G, Ball CA.

Methods Mol Biol. 2003;224:235-48. No abstract available.

PMID:
12710676
39.

The Stanford Microarray Database: data access and quality assessment tools.

Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G.

Nucleic Acids Res. 2003 Jan 1;31(1):94-6.

40.

Microarray databases: standards and ontologies.

Stoeckert CJ Jr, Causton HC, Ball CA.

Nat Genet. 2002 Dec;32 Suppl:469-73. Review.

PMID:
12454640
41.

The underlying principles of scientific publication.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J; Microarray Gene Expression Data.

Bioinformatics. 2002 Nov;18(11):1409. Review. No abstract available.

PMID:
12424109
42.

Standards for microarray data.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J; Microarray Gene Expression Data (MGED) Society.

Science. 2002 Oct 18;298(5593):539. No abstract available.

PMID:
12387284
43.

Saccharomyces Genome Database.

Issel-Tarver L, Christie KR, Dolinski K, Andrada R, Balakrishnan R, Ball CA, Binkley G, Dong S, Dwight SS, Fisk DG, Harris M, Schroeder M, Sethuraman A, Tse K, Weng S, Botstein D, Cherry JM.

Methods Enzymol. 2002;350:329-46. No abstract available.

PMID:
12073322
44.

Identification of genes periodically expressed in the human cell cycle and their expression in tumors.

Whitfield ML, Sherlock G, Saldanha AJ, Murray JI, Ball CA, Alexander KE, Matese JC, Perou CM, Hurt MM, Brown PO, Botstein D.

Mol Biol Cell. 2002 Jun;13(6):1977-2000.

45.

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM.

Nucleic Acids Res. 2002 Jan 1;30(1):69-72.

46.

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M.

Nat Genet. 2001 Dec;29(4):365-71.

PMID:
11726920
47.

Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms.

Ball CA, Cherry JM.

Curr Opin Chem Biol. 2001 Feb;5(1):86-9. Review.

48.

Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G.

Nat Genet. 2000 May;25(1):25-9. No abstract available.

49.

The Stanford Microarray Database.

Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC, Dwight SS, Kaloper M, Weng S, Jin H, Ball CA, Eisen MB, Spellman PT, Brown PO, Botstein D, Cherry JM.

Nucleic Acids Res. 2001 Jan 1;29(1):152-5.

50.

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data.

Ball CA, Jin H, Sherlock G, Weng S, Matese JC, Andrada R, Binkley G, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Schroeder M, Botstein D, Cherry JM.

Nucleic Acids Res. 2001 Jan 1;29(1):80-1.

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