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Items: 34

1.

Proteomic Changes in Mouse Spleen after Radiation-Induced Injury and its Modulation by Gamma-Tocotrienol.

Cheema AK, Byrum SD, Sharma NK, Altadill T, Kumar VP, Biswas S, Balgley BM, Hauer-Jensen M, Tackett AJ, Ghosh SP.

Radiat Res. 2018 Nov;190(5):449-463. doi: 10.1667/RR15008.1. Epub 2018 Aug 2.

PMID:
30070965
2.

CNTF receptor subunit α as a marker for glioma tumor-initiating cells and tumor grade: laboratory investigation.

Lu J, Ksendzovsky A, Yang C, Mehta GU, Yong RL, Weil RJ, Park DM, Mushlin HM, Fang X, Balgley BM, Lee DH, Lee CS, Lonser RR, Zhuang Z.

J Neurosurg. 2012 Dec;117(6):1022-1031. doi: 10.3171/2012.9.JNS1212. Epub 2012 Oct 12.

3.

Identification of factors that function in Drosophila salivary gland cell death during development using proteomics.

McPhee CK, Balgley BM, Nelson C, Hill JH, Batlevi Y, Fang X, Lee CS, Baehrecke EH.

Cell Death Differ. 2013 Feb;20(2):218-25. doi: 10.1038/cdd.2012.110. Epub 2012 Aug 31.

4.

Targeted tissue proteomic analysis of human astrocytomas.

Fang X, Wang C, Balgley BM, Zhao K, Wang W, He F, Weil RJ, Lee CS.

J Proteome Res. 2012 Aug 3;11(8):3937-46. doi: 10.1021/pr300303t. Epub 2012 Jul 25.

5.

Oncoproteomic analysis reveals co-upregulation of RELA and STAT5 in carboplatin resistant ovarian carcinoma.

Jinawath N, Vasoontara C, Jinawath A, Fang X, Zhao K, Yap KL, Guo T, Lee CS, Wang W, Balgley BM, Davidson B, Wang TL, Shih IeM.

PLoS One. 2010 Jun 18;5(6):e11198. doi: 10.1371/journal.pone.0011198.

6.

Comparison of multidimensional shotgun technologies targeting tissue proteomics.

Fang X, Balgley BM, Wang W, Park DM, Lee CS.

Electrophoresis. 2009 Dec;30(23):4063-70. doi: 10.1002/elps.200900367.

7.

Recent advances in capillary electrophoresis-based proteomic techniques for biomarker discovery.

Fang X, Balgley BM, Lee CS.

Electrophoresis. 2009 Dec;30(23):3998-4007. doi: 10.1002/elps.200900219. Review.

PMID:
19960464
8.

Systematic comparison of the human saliva and plasma proteomes.

Yan W, Apweiler R, Balgley BM, Boontheung P, Bundy JL, Cargile BJ, Cole S, Fang X, Gonzalez-Begne M, Griffin TJ, Hagen F, Hu S, Wolinsky LE, Lee CS, Malamud D, Melvin JE, Menon R, Mueller M, Qiao R, Rhodus NL, Sevinsky JR, States D, Stephenson JL, Than S, Yates JR, Yu W, Xie H, Xie Y, Omenn GS, Loo JA, Wong DT.

Proteomics Clin Appl. 2009 Jan 1;3(1):116-134.

9.

Capillary isoelectric focusing/reversed phase liquid chromatography/mass spectrometry.

Lee CS, Balgley BM.

Methods Mol Biol. 2009;492:233-40. doi: 10.1007/978-1-59745-493-3_13.

PMID:
19241036
10.

Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues.

Balgley BM, Guo T, Zhao K, Fang X, Tavassoli FA, Lee CS.

J Proteome Res. 2009 Feb;8(2):917-25. doi: 10.1021/pr800503u.

11.

Differential expression of the regulated catecholamine secretory pathway in different hereditary forms of pheochromocytoma.

Eisenhofer G, Huynh TT, Elkahloun A, Morris JC, Bratslavsky G, Linehan WM, Zhuang Z, Balgley BM, Lee CS, Mannelli M, Lenders JW, Bornstein SR, Pacak K.

Am J Physiol Endocrinol Metab. 2008 Nov;295(5):E1223-33. doi: 10.1152/ajpendo.90591.2008. Epub 2008 Oct 14.

12.

Evaluation of confidence and reproducibility in quantitative proteomics performed by a capillary isoelectric focusing-based proteomic platform coupled with a spectral counting approach.

Balgley BM, Wang W, Song T, Fang X, Yang L, Lee CS.

Electrophoresis. 2008 Jul;29(14):3047-54. doi: 10.1002/elps.200800050.

PMID:
18655040
13.

Application of capillary isotachophoresis-based multidimensional separations coupled with electrospray ionization-tandem mass spectrometry for characterization of mouse brain mitochondrial proteome.

Fang X, Wang W, Yang L, Chandrasekaran K, Kristian T, Balgley BM, Lee CS.

Electrophoresis. 2008 May;29(10):2215-23. doi: 10.1002/elps.200700609.

14.

Human Proteinpedia enables sharing of human protein data.

Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A.

Nat Biotechnol. 2008 Feb;26(2):164-7. doi: 10.1038/nbt0208-164. No abstract available.

15.

Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues.

Xu H, Yang L, Wang W, Shi SR, Liu C, Liu Y, Fang X, Taylor CR, Lee CS, Balgley BM.

J Proteome Res. 2008 Mar;7(3):1098-108. doi: 10.1021/pr7006768. Epub 2008 Feb 8.

PMID:
18257518
16.

Identification of a novel proliferation-related protein, WHSC1 4a, in human gliomas.

Li J, Yin C, Okamoto H, Mushlin H, Balgley BM, Lee CS, Yuan K, Ikejiri B, Glasker S, Vortmeyer AO, Oldfield EH, Weil RJ, Zhuang Z.

Neuro Oncol. 2008 Feb;10(1):45-51. doi: 10.1215/15228517-2007-036. Epub 2008 Jan 8. Erratum in: Neuro Oncol. 2008 Apr;10(2):231. Mushlin, Harry [added].

17.

Comparison of electrokinetics-based multidimensional separations coupled with electrospray ionization-tandem mass spectrometry for characterization of human salivary proteins.

Fang X, Yang L, Wang W, Song T, Lee CS, DeVoe DL, Balgley BM.

Anal Chem. 2007 Aug 1;79(15):5785-92. Epub 2007 Jul 6.

PMID:
17614365
18.

Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy.

Balgley BM, Laudeman T, Yang L, Song T, Lee CS.

Mol Cell Proteomics. 2007 Sep;6(9):1599-608. Epub 2007 May 28.

19.

Proteome analysis of microdissected formalin-fixed and paraffin-embedded tissue specimens.

Guo T, Wang W, Rudnick PA, Song T, Li J, Zhuang Z, Weil RJ, DeVoe DL, Lee CS, Balgley BM.

J Histochem Cytochem. 2007 Jul;55(7):763-72. Epub 2007 Apr 4.

PMID:
17409379
20.
21.

Membrane proteome analysis of microdissected ovarian tumor tissues using capillary isoelectric focusing/reversed-phase liquid chromatography-tandem MS.

Wang W, Guo T, Rudnick PA, Song T, Li J, Zhuang Z, Zheng W, Devoe DL, Lee CS, Balgley BM.

Anal Chem. 2007 Feb 1;79(3):1002-9.

PMID:
17263328
22.

Mass spectrometry-based tissue proteomics for cancer biomarker discovery.

Balgley BM, Wang W, De Voe DL, Lee CS.

Per Med. 2007 Feb;4(1):45-58. doi: 10.2217/17410541.4.1.45.

PMID:
29793304
23.

Capillary separations enabling tissue proteomics-based biomarker discovery.

Guo T, Lee CS, Wang W, DeVoe DL, Balgley BM.

Electrophoresis. 2006 Sep;27(18):3523-32. Review.

PMID:
16977682
25.
26.

Protein extraction from formalin-fixed, paraffin-embedded tissue sections: quality evaluation by mass spectrometry.

Shi SR, Liu C, Balgley BM, Lee C, Taylor CR.

J Histochem Cytochem. 2006 Jun;54(6):739-43. Epub 2006 Jan 6.

PMID:
16399996
27.

Proteome analysis of microdissected tumor tissue using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-tandem MS.

Wang Y, Rudnick PA, Evans EL, Li J, Zhuang Z, Devoe DL, Lee CS, Balgley BM.

Anal Chem. 2005 Oct 15;77(20):6549-56.

PMID:
16223239
28.

Tissue proteomics using capillary isoelectric focusing-based multidimensional separations.

Wang Y, Balgley BM, Lee CS.

Expert Rev Proteomics. 2005 Oct;2(5):659-67. Review.

PMID:
16209646
29.

Electrospray interfacing of polymer microfluidics to MALDI-MS.

Wang YX, Zhou Y, Balgley BM, Cooper JW, Lee CS, DeVoe DL.

Electrophoresis. 2005 Oct;26(19):3631-40.

PMID:
16136528
30.

Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation.

Rudnick PA, Wang Y, Evans E, Lee CS, Balgley BM.

J Proteome Res. 2005 Jul-Aug;4(4):1353-60.

PMID:
16083287
31.

Effects of chromatography conditions on intact protein separations for top-down proteomics.

Wang Y, Balgley BM, Rudnick PA, Lee CS.

J Chromatogr A. 2005 May 6;1073(1-2):35-41.

PMID:
15909503
32.

Integrated capillary isoelectric focusing/nano-reversed phase liquid chromatography coupled with ESI-MS for characterization of intact yeast proteins.

Wang Y, Balgley BM, Rudnick PA, Evans EL, DeVoe DL, Lee CS.

J Proteome Res. 2005 Jan-Feb;4(1):36-42.

PMID:
15707355
33.

Capillary isoelectric focusing-based multidimensional concentration/separation platform for proteome analysis.

Chen J, Balgley BM, DeVoe DL, Lee CS.

Anal Chem. 2003 Jul 1;75(13):3145-52.

PMID:
12964763
34.

Utilizing renewable resources to create functional polymers: chitosan-based associative thickener.

Wu LQ, Embree HD, Balgley BM, Smith PJ, Payne GF.

Environ Sci Technol. 2002 Aug 1;36(15):3446-54.

PMID:
12188378

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