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Items: 37

1.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
2.

High throughput SNP discovery and genotyping in hexaploid wheat.

Rimbert H, Darrier B, Navarro J, Kitt J, Choulet F, Leveugle M, Duarte J, Rivière N, Eversole K; International Wheat Genome Sequencing Consortium, Le Gouis J; on behalf The BreedWheat Consortium, Davassi A, Balfourier F, Le Paslier MC, Berard A, Brunel D, Feuillet C, Poncet C, Sourdille P, Paux E.

PLoS One. 2018 Jan 2;13(1):e0186329. doi: 10.1371/journal.pone.0186329. eCollection 2018.

3.

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism.

Darrier B, Rimbert H, Balfourier F, Pingault L, Josselin AA, Servin B, Navarro J, Choulet F, Paux E, Sourdille P.

Genetics. 2017 Jul;206(3):1373-1388. doi: 10.1534/genetics.116.196014. Epub 2017 May 22.

4.

Exploiting the Repetitive Fraction of the Wheat Genome for High-Throughput Single-Nucleotide Polymorphism Discovery and Genotyping.

Cubizolles N, Rey E, Choulet F, Rimbert H, Laugier C, Balfourier F, Bordes J, Poncet C, Jack P, James C, Gielen J, Argillier O, Jaubertie JP, Auzanneau J, Rohde A, Ouwerkerk PB, Korzun V, Kollers S, Guerreiro L, Hourcade D, Robert O, Devaux P, Mastrangelo AM, Feuillet C, Sourdille P, Paux E.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.09.0078.

5.

Predictions of heading date in bread wheat (Triticum aestivum L.) using QTL-based parameters of an ecophysiological model.

Bogard M, Ravel C, Paux E, Bordes J, Balfourier F, Chapman SC, Le Gouis J, Allard V.

J Exp Bot. 2014 Nov;65(20):5849-65. doi: 10.1093/jxb/eru328. Epub 2014 Aug 22.

6.

Structural and functional partitioning of bread wheat chromosome 3B.

Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, Alaux M, Jamilloux V, Poulain J, Durand C, Bellec A, Gaspin C, Safar J, Dolezel J, Rogers J, Vandepoele K, Aury JM, Mayer K, Berges H, Quesneville H, Wincker P, Feuillet C.

Science. 2014 Jul 18;345(6194):1249721. doi: 10.1126/science.1249721.

7.

Association study of wheat grain protein composition reveals that gliadin and glutenin composition are trans-regulated by different chromosome regions.

Plessis A, Ravel C, Bordes J, Balfourier F, Martre P.

J Exp Bot. 2013 Sep;64(12):3627-44. doi: 10.1093/jxb/ert188. Epub 2013 Jul 23.

8.

Rht-1 and Ppd-D1 associations with height, GA sensitivity, and days to heading in a worldwide bread wheat collection.

Wilhelm EP, Boulton MI, Al-Kaff N, Balfourier F, Bordes J, Greenland AJ, Powell W, Mackay IJ.

Theor Appl Genet. 2013 Sep;126(9):2233-43. doi: 10.1007/s00122-013-2130-9. Epub 2013 May 31.

PMID:
23722594
9.

Haplotype dictionary for the Rht-1 loci in wheat.

Wilhelm EP, Mackay IJ, Saville RJ, Korolev AV, Balfourier F, Greenland AJ, Boulton MI, Powell W.

Theor Appl Genet. 2013 Jul;126(7):1733-47. doi: 10.1007/s00122-013-2088-7. Epub 2013 Apr 4.

PMID:
23553443
10.

Genomic regions associated with the nitrogen limitation response revealed in a global wheat core collection.

Bordes J, Ravel C, Jaubertie JP, Duperrier B, Gardet O, Heumez E, Pissavy AL, Charmet G, Le Gouis J, Balfourier F.

Theor Appl Genet. 2013 Mar;126(3):805-22. doi: 10.1007/s00122-012-2019-z. Epub 2012 Nov 29.

PMID:
23192671
11.

Association mapping and haplotype analysis of a 3.1-Mb genomic region involved in Fusarium head blight resistance on wheat chromosome 3BS.

Hao C, Wang Y, Hou J, Feuillet C, Balfourier F, Zhang X.

PLoS One. 2012;7(10):e46444. doi: 10.1371/journal.pone.0046444. Epub 2012 Oct 5.

12.

Strong presence of the high grain protein content allele of NAM-B1 in Fennoscandian wheat.

Hagenblad J, Asplund L, Balfourier F, Ravel C, Leino MW.

Theor Appl Genet. 2012 Dec;125(8):1677-86. doi: 10.1007/s00122-012-1943-2. Epub 2012 Aug 1.

PMID:
22850788
13.

Application of direct calibration in multivariate image analysis of heterogeneous materials.

Jaillais B, Boulet JC, Roger JM, Balfourier F, Berbezy P, Bertrand D.

Anal Chim Acta. 2012 Jul 13;734:45-53. doi: 10.1016/j.aca.2012.05.002. Epub 2012 May 17.

PMID:
22704471
14.

Genome-wide association analysis to identify chromosomal regions determining components of earliness in wheat.

Le Gouis J, Bordes J, Ravel C, Heumez E, Faure S, Praud S, Galic N, Remoué C, Balfourier F, Allard V, Rousset M.

Theor Appl Genet. 2012 Feb;124(3):597-611. doi: 10.1007/s00122-011-1732-3. Epub 2011 Nov 8.

PMID:
22065067
15.

Deciphering the genetics of flowering time by an association study on candidate genes in bread wheat (Triticum aestivum L.).

Rousset M, Bonnin I, Remoué C, Falque M, Rhoné B, Veyrieras JB, Madur D, Murigneux A, Balfourier F, Le Gouis J, Santoni S, Goldringer I.

Theor Appl Genet. 2011 Oct;123(6):907-26. doi: 10.1007/s00122-011-1636-2. Epub 2011 Jul 15.

PMID:
21761163
16.

Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot.

Saintenac C, Faure S, Remay A, Choulet F, Ravel C, Paux E, Balfourier F, Feuillet C, Sourdille P.

Chromosoma. 2011 Apr;120(2):185-98. doi: 10.1007/s00412-010-0302-9. Epub 2010 Dec 16.

PMID:
21161258
17.

Genetic diversity and linkage disequilibrium studies on a 3.1-Mb genomic region of chromosome 3B in European and Asian bread wheat (Triticum aestivum L.) populations.

Hao CY, Perretant MR, Choulet F, Wang LF, Paux E, Sourdille P, Zhang XY, Feuillet C, Balfourier F.

Theor Appl Genet. 2010 Nov;121(7):1209-25. doi: 10.1007/s00122-010-1382-x. Epub 2010 Jun 18.

PMID:
20559816
18.

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat.

Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant JP, Sourdille P, Balfourier F, Le Paslier MC, Chauveau A, Cakir M, Gandon B, Feuillet C.

Plant Biotechnol J. 2010 Feb;8(2):196-210. doi: 10.1111/j.1467-7652.2009.00477.x.

19.

[Genetic differentiation of hexaploid wheat inferred from analysis of microsatellite loci].

Mitrofanova OP, Strel'chenko PP, Konarev AV, Balfourier F.

Genetika. 2009 Nov;45(11):1530-9. Russian.

PMID:
20058799
20.

Evaluation of the genetic variability of homoeologous group 3 SSRs in bread wheat.

Chebotar S, Sourdille P, Paux E, Balfourier F, Feuillet C, Bernard M.

Tsitol Genet. 2009 Mar-Apr;43(2):33-46.

PMID:
19938624
21.

Nucleotide polymorphism in the wheat transcriptional activator Spa influences its pattern of expression and has pleiotropic effects on grain protein composition, dough viscoelasticity, and grain hardness.

Ravel C, Martre P, Romeuf I, Dardevet M, El-Malki R, Bordes J, Duchateau N, Brunel D, Balfourier F, Charmet G.

Plant Physiol. 2009 Dec;151(4):2133-44. doi: 10.1104/pp.109.146076. Epub 2009 Oct 14.

22.

Analysis of diversity and linkage disequilibrium along chromosome 3B of bread wheat (Triticum aestivum L.).

Horvath A, Didier A, Koenig J, Exbrayat F, Charmet G, Balfourier F.

Theor Appl Genet. 2009 Nov;119(8):1523-37. doi: 10.1007/s00122-009-1153-8. Epub 2009 Sep 16.

PMID:
19756470
23.

Fine mapping and marker development for the crossability gene SKr on chromosome 5BS of hexaploid wheat (Triticum aestivum L.).

Alfares W, Bouguennec A, Balfourier F, Gay G, Bergès H, Vautrin S, Sourdille P, Bernard M, Feuillet C.

Genetics. 2009 Oct;183(2):469-81, 1SI-3SI. doi: 10.1534/genetics.109.107706. Epub 2009 Aug 3.

24.

High level of conservation between genes coding for the GAMYB transcription factor in barley (Hordeum vulgare L.) and bread wheat (Triticum aestivum L.) collections.

Haseneyer G, Ravel C, Dardevet M, Balfourier F, Sourdille P, Charmet G, Brunel D, Sauer S, Geiger HH, Graner A, Stracke S.

Theor Appl Genet. 2008 Aug;117(3):321-31. doi: 10.1007/s00122-008-0777-4. Epub 2008 May 17.

25.

Soft selective sweep near a gene that increases plant height in wheat.

Raquin AL, Brabant P, Rhoné B, Balfourier F, Leroy P, Goldringer I.

Mol Ecol. 2008 Feb;17(3):741-56. doi: 10.1111/j.1365-294X.2007.03620.x. Epub 2008 Jan 8.

PMID:
18194170
26.

A worldwide bread wheat core collection arrayed in a 384-well plate.

Balfourier F, Roussel V, Strelchenko P, Exbrayat-Vinson F, Sourdille P, Boutet G, Koenig J, Ravel C, Mitrofanova O, Beckert M, Charmet G.

Theor Appl Genet. 2007 May;114(7):1265-75. Epub 2007 Feb 21.

PMID:
17318494
27.

Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.).

Ravel C, Praud S, Murigneux A, Canaguier A, Sapet F, Samson D, Balfourier F, Dufour P, Chalhoub B, Brunel D, Beckert M, Charmet G.

Genome. 2006 Sep;49(9):1131-9.

PMID:
17110993
28.

Transferable bread wheat EST-SSRs can be useful for phylogenetic studies among the Triticeae species.

Zhang LY, Ravel C, Bernard M, Balfourier F, Leroy P, Feuillet C, Sourdille P.

Theor Appl Genet. 2006 Aug;113(3):407-18. Epub 2006 May 31.

PMID:
16736140
29.

Single nucleotide polymorphism, genetic mapping, and expression of genes coding for the DOF wheat prolamin-box binding factor.

Ravel C, Nagy IJ, Martre P, Sourdille P, Dardevet M, Balfourier F, Pont C, Giancola S, Praud S, Charmet G.

Funct Integr Genomics. 2006 Oct;6(4):310-21. Epub 2006 Mar 28.

PMID:
16568337
30.

Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study.

Ravel C, Praud S, Murigneux A, Linossier L, Dardevet M, Balfourier F, Dufour P, Brunel D, Charmet G.

Theor Appl Genet. 2006 Feb;112(4):738-43. Epub 2005 Dec 16.

PMID:
16362275
31.

SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000.

Roussel V, Leisova L, Exbrayat F, Stehno Z, Balfourier F.

Theor Appl Genet. 2005 Jun;111(1):162-70. Epub 2005 May 11.

PMID:
15887038
32.

Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes.

Roussel V, Koenig J, Beckert M, Balfourier F.

Theor Appl Genet. 2004 Mar;108(5):920-30. Epub 2003 Nov 12.

PMID:
14614567
33.

An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes.

Jones ES, Mahoney NL, Hayward MD, Armstead IP, Jones JG, Humphreys MO, King IP, Kishida T, Yamada T, Balfourier F, Charmet G, Forster JW.

Genome. 2002 Apr;45(2):282-95.

PMID:
11962626
34.

A high-density molecular map for ryegrass (Lolium perenne) using AFLP markers.

Bert PF, Charmet G, Sourdille P, Hayward MD, Balfourier F.

Theor Appl Genet. 1999 Aug;99(3-4):445-52. doi: 10.1007/s001220051256.

PMID:
22665177
35.

Hierarchical clustering of perennial ryegrass populations with geographic contiguity constraint.

Charmet G, Balfourier F, Monestiez P.

Theor Appl Genet. 1994 Apr;88(1):42-8. doi: 10.1007/BF00222392.

PMID:
24185880
36.

Isozyme variation and species relationships in the genus Lolium L. (ryegrasses, Graminaceae).

Charmet G, Balfourier F.

Theor Appl Genet. 1994 Jan;87(6):641-9. doi: 10.1007/BF00222888.

PMID:
24190406
37.

Genotype x environment interactions in a core collection of French perennial ryegrass populations.

Charmet G, Balfourier F, Ravel C, Denis JB.

Theor Appl Genet. 1993 Jul;86(6):731-6. doi: 10.1007/BF00222663.

PMID:
24193783

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