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Data of epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment.

Kang X, Liu S, Fang L, Lin S, Liu M, Baldwin RL, Liu GE, Li CJ.

Data Brief. 2019 Dec 12;28:104983. doi: 10.1016/j.dib.2019.104983. eCollection 2020 Feb.


Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations.

Fang L, Liu S, Liu M, Kang X, Lin S, Li B, Connor EE, Baldwin RL 6th, Tenesa A, Ma L, Liu GE, Li CJ.

BMC Biol. 2019 Aug 16;17(1):68. doi: 10.1186/s12915-019-0687-8.


Transcriptomic Profiling of Duodenal Epithelium Reveals Temporally Dynamic Impacts of Direct Duodenal Starch-Infusion During Dry Period of Dairy Cattle.

Li CJ, Lin S, Ranilla-García MJ, Baldwin RL.

Front Vet Sci. 2019 Jul 2;6:214. doi: 10.3389/fvets.2019.00214. eCollection 2019.


Effect of milking frequency and α-tocopherol plus selenium supplementation on sheep milk lipid composition and oxidative stability.

Pulido E, Fernández M, Prieto N, Baldwin RL 6th, Andrés S, López S, Giráldez FJ.

J Dairy Sci. 2019 Apr;102(4):3097-3109. doi: 10.3168/jds.2018-15456. Epub 2019 Feb 14.


Temporal dynamics in meta longitudinal RNA-Seq data.

Oh S, Li C, Baldwin RL, Song S, Liu F, Li RW.

Sci Rep. 2019 Jan 24;9(1):763. doi: 10.1038/s41598-018-37397-7.


Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing.

Capuco AV, Bickhart D, Li C, Evock-Clover CM, Choudhary RK, Grossi P, Bertoni G, Trevisi E, Aiken GE, McLeod KR, Baldwin RL 6th.

J Dairy Sci. 2018 Nov;101(11):10478-10494. doi: 10.3168/jds.2018-14735. Epub 2018 Aug 23.


Transcriptomic Impacts of Rumen Epithelium Induced by Butyrate Infusion in Dairy Cattle in Dry Period.

Baldwin RL 6th, Li RW, Jia Y, Li CJ.

Gene Regul Syst Bio. 2018 May 9;12:1177625018774798. doi: 10.1177/1177625018774798. eCollection 2018.


Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.

Zhou Y, Connor EE, Bickhart DM, Li C, Baldwin RL, Schroeder SG, Rosen BD, Yang L, Van Tassell CP, Liu GE.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy039.


Rumen Function and Development.

Baldwin RL 6th, Connor EE.

Vet Clin North Am Food Anim Pract. 2017 Nov;33(3):427-439. doi: 10.1016/j.cvfa.2017.06.001. Epub 2017 Aug 12. Review.


Clash between energy landscape theory and foldon-dependent protein folding.

Baldwin RL.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):8442-8443. doi: 10.1073/pnas.1709133114. Epub 2017 Jul 26. No abstract available.


Selection of internal reference genes for normalization of reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis in the rumen epithelium.

Die JV, Baldwin RL, Rowland LJ, Li R, Oh S, Li C, Connor EE, Ranilla MJ.

PLoS One. 2017 Feb 24;12(2):e0172674. doi: 10.1371/journal.pone.0172674. eCollection 2017.


Reducing gut effects from Cryptosporidium parvum infection in dairy calves through prophylactic glucagon-like peptide 2 therapy or feeding of an artificial sweetener.

Connor EE, Wall EH, Bravo DM, Evock-Clover CM, Elsasser TH, Baldwin RL 6th, Santín M, Vinyard BT, Kahl S, Walker MP.

J Dairy Sci. 2017 Apr;100(4):3004-3018. doi: 10.3168/jds.2016-11861. Epub 2017 Jan 26.


How the hydrophobic factor drives protein folding.

Baldwin RL, Rose GD.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12462-12466. Epub 2016 Oct 17.


Glucagon-like peptide 2 and its beneficial effects on gut function and health in production animals.

Connor EE, Evock-Clover CM, Wall EH, Baldwin RL 6th, Santin-Duran M, Elsasser TH, Bravo DM.

Domest Anim Endocrinol. 2016 Jul;56 Suppl:S56-65. doi: 10.1016/j.domaniend.2015.11.008. Review.


Consumption of endophyte-infected fescue seed during the dry period does not decrease milk production in the following lactation.

Baldwin RL 6th, Capuco AV, Evock-Clover CM, Grossi P, Choudhary RK, Vanzant ES, Elsasser TH, Bertoni G, Trevisi E, Aiken GE, McLeod KR.

J Dairy Sci. 2016 Sep;99(9):7574-7589. doi: 10.3168/jds.2016-10993. Epub 2016 Jun 16.


The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome.

Li RW, Li W, Sun J, Yu P, Baldwin RL, Urban JF.

Sci Rep. 2016 Feb 8;6:20606. doi: 10.1038/srep20606.


Transcriptomic Sequencing Reveals a Set of Unique Genes Activated by Butyrate-Induced Histone Modification.

Li CJ, Li RW, Baldwin RL 6th, Blomberg le A, Wu S, Li W.

Gene Regul Syst Bio. 2016 Jan 21;10:1-8. doi: 10.4137/GRSB.S35607. eCollection 2016.


Role of rumen butyrate in regulation of nitrogen utilization and urea nitrogen kinetics in growing sheep.

Agarwal U, Hu Q, Baldwin RL, Bequette BJ.

J Anim Sci. 2015 May;93(5):2382-90. doi: 10.2527/jas.2014-8738.


John Schellman and the birth of protein folding.

Baldwin RL, von Hippel PH.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):6776-7. doi: 10.1073/pnas.1506481112. Epub 2015 May 7. No abstract available.


Dynamic hydration shell restores Kauzmann's 1959 explanation of how the hydrophobic factor drives protein folding.

Baldwin RL.

Proc Natl Acad Sci U S A. 2014 Sep 9;111(36):13052-6. doi: 10.1073/pnas.1414556111. Epub 2014 Aug 25.


Transcriptional regulators transforming growth factor-β1 and estrogen-related receptor-α identified as putative mediators of calf rumen epithelial tissue development and function during weaning.

Connor EE, Baldwin RL 6th, Walker MP, Ellis SE, Li C, Kahl S, Chung H, Li RW.

J Dairy Sci. 2014 Jul;97(7):4193-207. doi: 10.3168/jds.2013-7471. Epub 2014 Apr 24.


Hot topic: Brown marmorated stink bug odor compounds do not transfer into milk by feeding bug-contaminated corn silage to lactating dairy cattle.

Baldwin RL 6th, Zhang A, Fultz SW, Abubeker S, Harris C, Connor EE, Van Hekken DL.

J Dairy Sci. 2014;97(4):1877-84. doi: 10.3168/jds.2013-7545. Epub 2014 Feb 22.


Comparison of delayed matching-to-sample performance in monkeys and children.

Chelonis JJ, Cox AR, Karr MJ, Prunty PK, Baldwin RL, Paule MG.

Behav Processes. 2014 Mar;103:261-8. doi: 10.1016/j.beproc.2014.01.002. Epub 2014 Jan 17.


Use of residual feed intake in Holsteins during early lactation shows potential to improve feed efficiency through genetic selection.

Connor EE, Hutchison JL, Norman HD, Olson KM, Van Tassell CP, Leith JM, Baldwin RL 6th.

J Anim Sci. 2013 Aug;91(8):3978-88. doi: 10.2527/jas.2012-5977. Epub 2013 May 8.


The new view of hydrophobic free energy.

Baldwin RL.

FEBS Lett. 2013 Apr 17;587(8):1062-6. doi: 10.1016/j.febslet.2013.01.006. Epub 2013 Jan 18. Review.


Properties of hydrophobic free energy found by gas-liquid transfer.

Baldwin RL.

Proc Natl Acad Sci U S A. 2013 Jan 29;110(5):1670-3. doi: 10.1073/pnas.1220825110. Epub 2013 Jan 14.


Gene expression in bovine rumen epithelium during weaning identifies molecular regulators of rumen development and growth.

Connor EE, Baldwin RL 6th, Li CJ, Li RW, Chung H.

Funct Integr Genomics. 2013 Mar;13(1):133-42. doi: 10.1007/s10142-012-0308-x. Epub 2013 Jan 13.


Glucagon-like peptide 2 therapy reduces negative effects of diarrhea on calf gut.

Connor EE, Kahl S, Elsasser TH, Baldwin RL 6th, Fayer R, Santin-Duran M, Sample GL, Evock-Clover CM.

J Dairy Sci. 2013 Mar;96(3):1793-802. doi: 10.3168/jds.2012-6216. Epub 2013 Jan 9.


Molten globules, entropy-driven conformational change and protein folding.

Baldwin RL, Rose GD.

Curr Opin Struct Biol. 2013 Feb;23(1):4-10. doi: 10.1016/ Epub 2012 Dec 10. Review.


The use of an incremental repeated acquisition task to assess learning in children.

Baldwin RL, Chelonis JJ, Prunty PK, Paule MG.

Behav Processes. 2012 Sep;91(1):103-14. doi: 10.1016/j.beproc.2012.06.004. Epub 2012 Jun 16.


Quantification of Transcriptome Responses of the Rumen Epithelium to Butyrate Infusion using RNA-seq Technology.

Baldwin RL 6th, Wu S, Li W, Li C, Bequette BJ, Li RW.

Gene Regul Syst Bio. 2012;6:67-80. doi: 10.4137/GRSB.S9687. Epub 2012 May 16.


Growth and Development Symposium: Understanding and mitigating the impacts of inflammation on animal growth and development.

Connor EE, Baldwin RL 6th, Blanton JR Jr, Johnson SE, Poulos S, Welsh TH Jr.

J Anim Sci. 2012 May;90(5):1436-7. doi: 10.2527/jas.2011-5234. No abstract available.


Gas-liquid transfer data used to analyze hydrophobic hydration and find the nature of the Kauzmann-Tanford hydrophobic factor.

Baldwin RL.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7310-3. doi: 10.1073/pnas.1203720109. Epub 2012 Apr 23.


Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers.

Baldwin RL 6th, Li RW, Li CJ, Thomson JM, Bequette BJ.

Physiol Genomics. 2012 May 1;44(10):543-50. doi: 10.1152/physiolgenomics.00144.2011. Epub 2012 Mar 27.


Perturbation dynamics of the rumen microbiota in response to exogenous butyrate.

Li RW, Wu S, Baldwin RL 6th, Li W, Li C.

PLoS One. 2012;7(1):e29392. doi: 10.1371/journal.pone.0029392. Epub 2012 Jan 12.


Early days of protein hydrogen exchange: 1954-1972.

Baldwin RL.

Proteins. 2011 Jul;79(7):2021-6. doi: 10.1002/prot.23039. Epub 2011 May 9.


Populations of the three major backbone conformations in 19 amino acid dipeptides.

Grdadolnik J, Mohacek-Grosev V, Baldwin RL, Avbelj F.

Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1794-8. doi: 10.1073/pnas.1017317108. Epub 2011 Jan 4.


Characterization of glucagon-like peptide 2 pathway member expression in bovine gastrointestinal tract.

Connor EE, Baldwin RL 6th, Capuco AV, Evock-Clover CM, Ellis SE, Sciabica KS.

J Dairy Sci. 2010 Nov;93(11):5167-78. doi: 10.3168/jds.2010-3205.


Desolvation penalty for burying hydrogen-bonded peptide groups in protein folding.

Baldwin RL.

J Phys Chem B. 2010 Dec 16;114(49):16223-7. doi: 10.1021/jp107111f. Epub 2010 Oct 20.


Helicity of short E-R/K peptides.

Sommese RF, Sivaramakrishnan S, Baldwin RL, Spudich JA.

Protein Sci. 2010 Oct;19(10):2001-5. doi: 10.1002/pro.469.


Dry molten globule intermediates and the mechanism of protein unfolding.

Baldwin RL, Frieden C, Rose GD.

Proteins. 2010 Oct;78(13):2725-37. doi: 10.1002/prot.22803.


Gene expression in the digestive tissues of ruminants and their relationships with feeding and digestive processes.

Connor EE, Li RW, Baldwin RL, Li C.

Animal. 2010 Jul;4(7):993-1007. doi: 10.1017/S1751731109991285.


Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth.

Connor EE, Kahl S, Elsasser TH, Parker JS, Li RW, Van Tassell CP, Baldwin RL 6th, Barao SM.

Funct Integr Genomics. 2010 Mar;10(1):39-51. doi: 10.1007/s10142-009-0138-7. Epub 2009 Sep 24.


Glutamate is the major anaplerotic substrate in the tricarboxylic acid cycle of isolated rumen epithelial and duodenal mucosal cells from beef cattle.

El-Kadi SW, Baldwin RL 6th, McLeod KR, Sunny NE, Bequette BJ.

J Nutr. 2009 May;139(5):869-75. doi: 10.3945/jn.108.103226. Epub 2009 Mar 12.


Origin of the change in solvation enthalpy of the peptide group when neighboring peptide groups are added.

Avbelj F, Baldwin RL.

Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3137-41. doi: 10.1073/pnas.0813018106. Epub 2009 Feb 6.


WITHDRAWN: Use of Interval Schedules to Examine Motivation and Sustained Attention.

Cross NC, Chelonis JJ, Finch MN, Edwards MC, Baldwin RL.

Neurotoxicol Teratol. 2009 Feb 5. [Epub ahead of print]


The search for folding intermediates and the mechanism of protein folding.

Baldwin RL.

Annu Rev Biophys. 2008;37:1-21. doi: 10.1146/annurev.biophys.37.032807.125948. Review.


Recollections of Arthur Kornberg (1918-2007) and the beginning of the Stanford Biochemistry Department.

Baldwin RL.

Protein Sci. 2008 Mar;17(3):385-8. doi: 10.1002/pro.170385. No abstract available.


Use of computer simulation to teach a systems approach to metabolism.

Johnson HA, Maas JA, Calvert CC, Baldwin RL.

J Anim Sci. 2008 Feb;86(2):483-99. Epub 2007 Oct 16.


Energetics of protein folding.

Baldwin RL.

J Mol Biol. 2007 Aug 10;371(2):283-301. Epub 2007 Jun 2. Review.


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