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Items: 37

1.

Big data in cryoEM: automated collection, processing and accessibility of EM data.

Baldwin PR, Tan YZ, Eng ET, Rice WJ, Noble AJ, Negro CJ, Cianfrocco MA, Potter CS, Carragher B.

Curr Opin Microbiol. 2018 Jun;43:1-8. doi: 10.1016/j.mib.2017.10.005. Epub 2017 Oct 31. Review.

PMID:
29100109
2.

Concurrent Inhibition of Pim and FLT3 Kinases Enhances Apoptosis of FLT3-ITD Acute Myeloid Leukemia Cells through Increased Mcl-1 Proteasomal Degradation.

Kapoor S, Natarajan K, Baldwin PR, Doshi KA, Lapidus RG, Mathias TJ, Scarpa M, Trotta R, Davila E, Kraus M, Huszar D, Tron AE, Perrotti D, Baer MR.

Clin Cancer Res. 2018 Jan 1;24(1):234-247. doi: 10.1158/1078-0432.CCR-17-1629. Epub 2017 Oct 26.

PMID:
29074603
3.

Prefrontal Connectivity and Glutamate Transmission: Relevance to Depression Pathophysiology and Ketamine Treatment.

Abdallah CG, Averill CL, Salas R, Averill LA, Baldwin PR, Krystal JH, Mathew SJ, Mathalon DH.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2017 Oct;2(7):566-574. doi: 10.1016/j.bpsc.2017.04.006.

4.

Genome-wide imaging association study implicates functional activity and glial homeostasis of the caudate in smoking addiction.

Qian DC, Molfese DL, Jin JL, Titus AJ, He Y, Li Y, Vaissié M, Viswanath H, Baldwin PR, Krahe R, Salas R, Amos CI.

BMC Genomics. 2017 Sep 19;18(1):740. doi: 10.1186/s12864-017-4124-5.

5.

Increased habenular connectivity in opioid users is associated with an α5 subunit nicotinic receptor genetic variant.

Curtis K, Viswanath H, Velasquez KM, Molfese DL, Harding MJ, Aramayo E, Baldwin PR, Ambrosi E, Madan A, Patriquin M, Frueh BC, Fowler JC, Kosten TR, Nielsen DA, Salas R.

Am J Addict. 2017 Oct;26(7):751-759. doi: 10.1111/ajad.12607. Epub 2017 Aug 31.

6.

Addressing preferred specimen orientation in single-particle cryo-EM through tilting.

Tan YZ, Baldwin PR, Davis JH, Williamson JR, Potter CS, Carragher B, Lyumkis D.

Nat Methods. 2017 Aug;14(8):793-796. doi: 10.1038/nmeth.4347. Epub 2017 Jul 3.

7.

A Novel Approach to Identifying a Neuroimaging Biomarker for Patients With Serious Mental Illness.

Madan A, Fowler JC, Patriquin MA, Salas R, Baldwin PR, Velasquez KM, Viswanath H, Molfese DL, Sharp C, Allen JG, Hardesty S, Oldham JM, Frueh BC.

J Neuropsychiatry Clin Neurosci. 2017 Summer;29(3):275-283. doi: 10.1176/appi.neuropsych.16090174. Epub 2017 Feb 27.

PMID:
28238273
8.

Real time functional MRI training to decrease motion in imaging studies: Lack of significant improvement.

Lal TM, Baldwin PR, Cai MB, Savjani RR, Eagleman DM, Ress D, Salas R.

Bull Menninger Clin. 2016 Fall;80(4):348-356.

PMID:
27936900
9.

Prefrontal cortex, temporal cortex, and hippocampus volume are affected in suicidal psychiatric patients.

Gosnell SN, Velasquez KM, Molfese DL, Molfese PJ, Madan A, Fowler JC, Christopher Frueh B, Baldwin PR, Salas R.

Psychiatry Res Neuroimaging. 2016 Oct 30;256:50-56. doi: 10.1016/j.pscychresns.2016.09.005. Epub 2016 Sep 13.

PMID:
27685801
10.

Neural correlates of healing prayers, depression and traumatic memories: A preliminary study.

Baldwin PR, Velasquez K, Koenig HG, Salas R, Boelens PA.

Complement Ther Med. 2016 Aug;27:123-9. doi: 10.1016/j.ctim.2016.07.002. Epub 2016 Jul 6.

PMID:
27515886
11.

Belief about Nicotine Modulates Subjective Craving and Insula Activity in Deprived Smokers.

Gu X, Lohrenz T, Salas R, Baldwin PR, Soltani A, Kirk U, Cinciripini PM, Montague PR.

Front Psychiatry. 2016 Jul 13;7:126. doi: 10.3389/fpsyt.2016.00126. eCollection 2016.

12.

De Novo modeling in cryo-EM density maps with Pathwalking.

Chen M, Baldwin PR, Ludtke SJ, Baker ML.

J Struct Biol. 2016 Dec;196(3):289-298. doi: 10.1016/j.jsb.2016.06.004. Epub 2016 Jul 17.

13.

Alignment algorithms and per-particle CTF correction for single particle cryo-electron tomography.

Galaz-Montoya JG, Hecksel CW, Baldwin PR, Wang E, Weaver SC, Schmid MF, Ludtke SJ, Chiu W.

J Struct Biol. 2016 Jun;194(3):383-94. doi: 10.1016/j.jsb.2016.03.018. Epub 2016 Mar 22.

14.

Anterior cingulum white matter is altered in tobacco smokers.

Baeza-Loya S, Velasquez KM, Molfese DL, Viswanath H, Curtis KN, Thompson-Lake DG, Baldwin PR, Ellmore TM, De La Garza R 2nd, Salas R.

Am J Addict. 2016 Apr;25(3):210-4. doi: 10.1111/ajad.12362. Epub 2016 Mar 22.

PMID:
27001211
15.

High resolution single particle refinement in EMAN2.1.

Bell JM, Chen M, Baldwin PR, Ludtke SJ.

Methods. 2016 May 1;100:25-34. doi: 10.1016/j.ymeth.2016.02.018. Epub 2016 Feb 27.

16.

Identifying diagnostically-relevant resting state brain functional connectivity in the ventral posterior complex via genetic data mining in autism spectrum disorder.

Baldwin PR, Curtis KN, Patriquin MA, Wolf V, Viswanath H, Shaw C, Sakai Y, Salas R.

Autism Res. 2016 May;9(5):553-62. doi: 10.1002/aur.1559. Epub 2015 Oct 9.

PMID:
26451751
17.

Enhanced Olfactory Cortex Connectivity in a Patient With PTSD With Olfactory Hallucinations.

Ridgewell C, Bray A, Curtis K, Velasquez K, Baldwin PR, Fowler JC, Mathew SJ, Salas R.

J Neuropsychiatry Clin Neurosci. 2015;27(2):e170-1. doi: 10.1176/appi.neuropsych.14070156. No abstract available.

PMID:
25923873
18.

Alterations in interhemispheric functional and anatomical connectivity are associated with tobacco smoking in humans.

Viswanath H, Velasquez KM, Thompson-Lake DG, Savjani R, Carter AQ, Eagleman D, Baldwin PR, De La Garza R 2nd, Salas R.

Front Hum Neurosci. 2015 Mar 9;9:116. doi: 10.3389/fnhum.2015.00116. eCollection 2015.

19.

Monocarbonyl analogs of curcumin inhibit growth of antibiotic sensitive and resistant strains of Mycobacterium tuberculosis.

Baldwin PR, Reeves AZ, Powell KR, Napier RJ, Swimm AI, Sun A, Giesler K, Bommarius B, Shinnick TM, Snyder JP, Liotta DC, Kalman D.

Eur J Med Chem. 2015 Mar 6;92:693-9. doi: 10.1016/j.ejmech.2015.01.020. Epub 2015 Jan 10.

20.

Belief about nicotine selectively modulates value and reward prediction error signals in smokers.

Gu X, Lohrenz T, Salas R, Baldwin PR, Soltani A, Kirk U, Cinciripini PM, Montague PR.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2539-44. doi: 10.1073/pnas.1416639112. Epub 2015 Jan 20.

21.

Interhemispheric insular and inferior frontal connectivity are associated with substance abuse in a psychiatric population.

Viswanath H, Velasquez KM, Savjani R, Molfese DL, Curtis K, Molfese PJ, Eagleman DM, Baldwin PR, Frueh BC, Fowler JC, Salas R.

Neuropharmacology. 2015 May;92:63-8. doi: 10.1016/j.neuropharm.2014.12.030. Epub 2015 Jan 12.

PMID:
25592214
22.

Characterizing white matter changes in cigarette smokers via diffusion tensor imaging.

Savjani RR, Velasquez KM, Thompson-Lake DG, Baldwin PR, Eagleman DM, De La Garza R 2nd, Salas R.

Drug Alcohol Depend. 2014 Dec 1;145:134-42. doi: 10.1016/j.drugalcdep.2014.10.006. Epub 2014 Oct 22.

PMID:
25457737
23.

Perceptions about e-cigarette safety may lead to e-smoking during pregnancy.

Baeza-Loya S, Viswanath H, Carter A, Molfese DL, Velasquez KM, Baldwin PR, Thompson-Lake DG, Sharp C, Fowler JC, De La Garza R 2nd, Salas R.

Bull Menninger Clin. 2014 Summer;78(3):243-52. doi: 10.1521/bumc.2014.78.3.243.

24.

The medial habenula: still neglected.

Viswanath H, Carter AQ, Baldwin PR, Molfese DL, Salas R.

Front Hum Neurosci. 2014 Jan 17;7:931. doi: 10.3389/fnhum.2013.00931. eCollection 2013. Review.

25.

The Role of the Habenula in Nicotine Addiction.

Baldwin PR, Alanis R, Salas R.

J Addict Res Ther. 2011 Oct 20;S1(2). pii: 002.

26.

SPARX, a new environment for Cryo-EM image processing.

Hohn M, Tang G, Goodyear G, Baldwin PR, Huang Z, Penczek PA, Yang C, Glaeser RM, Adams PD, Ludtke SJ.

J Struct Biol. 2007 Jan;157(1):47-55. Epub 2006 Jul 16.

PMID:
16931051
27.

The Transform Class in SPARX and EMAN2.

Baldwin PR, Penczek PA.

J Struct Biol. 2007 Jan;157(1):250-61. Epub 2006 Jun 17.

PMID:
16861004
28.

EMAN2: an extensible image processing suite for electron microscopy.

Tang G, Peng L, Baldwin PR, Mann DS, Jiang W, Rees I, Ludtke SJ.

J Struct Biol. 2007 Jan;157(1):38-46. Epub 2006 Jun 8.

PMID:
16859925
29.

The endosome-associated protein Hrs is hexameric and controls cargo sorting as a "master molecule".

Pullan L, Mullapudi S, Huang Z, Baldwin PR, Chin C, Sun W, Tsujimoto S, Kolodziej SJ, Stoops JK, Lee JC, Waxham MN, Bean AJ, Penczek PA.

Structure. 2006 Apr;14(4):661-71.

30.

Estimating alignment errors in sets of 2-D images.

Baldwin PR, Penczek PA.

J Struct Biol. 2005 May;150(2):211-25.

PMID:
15866744
31.

Dynamic gain control of dopamine delivery in freely moving animals.

Montague PR, McClure SM, Baldwin PR, Phillips PE, Budygin EA, Stuber GD, Kilpatrick MR, Wightman RM.

J Neurosci. 2004 Feb 18;24(7):1754-9.

32.

Automated determination of parameters describing power spectra of micrograph images in electron microscopy.

Huang Z, Baldwin PR, Mullapudi S, Penczek PA.

J Struct Biol. 2003 Oct-Nov;144(1-2):79-94.

PMID:
14643211
33.

EMAN: semiautomated software for high-resolution single-particle reconstructions.

Ludtke SJ, Baldwin PR, Chiu W.

J Struct Biol. 1999 Dec 1;128(1):82-97.

PMID:
10600563
34.

Complex Trkalian fields and solutions to Euler's equations for the ideal fluid.

Baldwin PR, Townsend GM.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Mar;51(3):2059-2068. No abstract available.

PMID:
9962866
35.

Dilute polymer solution in steady shear flow: Non-Newtonian stress.

Baldwin PR, Helfand E.

Phys Rev A. 1990 Jun 15;41(12):6772-6785. No abstract available.

PMID:
9903091
36.

Hyperpolarizabilities of conjugated polymers.

Yu J, Friedman B, Baldwin PR, Su WP.

Phys Rev B Condens Matter. 1989 Jun 15;39(17):12814-12817. No abstract available.

PMID:
9948155
37.

Concentration dependence of the initial decay rate of the polymer dynamical scattering factor: A renormalization-group study.

Baldwin PR.

Phys Rev A Gen Phys. 1986 Sep;34(3):2234-2247. No abstract available.

PMID:
9897510

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