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Items: 1 to 50 of 112

1.

The known and the unknown in soil microbial ecology.

Baldrian P.

FEMS Microbiol Ecol. 2019 Jan 9. doi: 10.1093/femsec/fiz005. [Epub ahead of print]

PMID:
30624643
2.

A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements.

Madrova P, Vetrovsky T, Omelka M, Grunt M, Smutna Y, Rapoport D, Vach M, Baldrian P, Kopecky J, Sagova-Mareckova M.

Front Microbiol. 2018 Nov 20;9:2807. doi: 10.3389/fmicb.2018.02807. eCollection 2018.

3.

Specialisation events of fungal metacommunities exposed to a persistent organic pollutant are suggestive of augmented pathogenic potential.

Martins C, Varela A, Leclercq CC, Núñez O, Větrovský T, Renaut J, Baldrian P, Silva Pereira C.

Microbiome. 2018 Nov 22;6(1):208. doi: 10.1186/s40168-018-0589-y.

4.

Mycobiome diversity: high-throughput sequencing and identification of fungi.

Nilsson RH, Anslan S, Bahram M, Wurzbacher C, Baldrian P, Tedersoo L.

Nat Rev Microbiol. 2019 Jan;17(2):95-109. doi: 10.1038/s41579-018-0116-y. Review.

PMID:
30442909
5.

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.

Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, Žifčáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM.

Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4. Epub 2018 Nov 12.

PMID:
30420746
6.

Diversity of fungi and bacteria in species-rich grasslands increases with plant diversity in shoots but not in roots and soil.

Navrátilová D, Tláskalová P, Kohout P, Drevojan P, Fajmon K, Chytrý M, Baldrian P.

FEMS Microbiol Ecol. 2019 Jan 1;95(1). doi: 10.1093/femsec/fiy208.

PMID:
30312395
7.

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding.

Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Leho Tedersoo, Bahram M.

MycoKeys. 2018 Sep 11;(39):29-40. doi: 10.3897/mycokeys.39.28109. eCollection 2018.

8.

Cellulase-Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems.

Houfani AA, Větrovský T, Navarrete OU, Štursová M, Tláskal V, Beiko RG, Boucherba N, Baldrian P, Benallaoua S, Jorquera MA.

Microb Ecol. 2018 Sep 12. doi: 10.1007/s00248-018-1251-8. [Epub ahead of print]

PMID:
30209585
9.

High-Throughput Sequencing Analysis of the Bacterial Community in Stone Fruit Phloem Tissues Infected by "Candidatus Phytoplasma prunorum".

Eichmeier A, Kiss T, Necas T, Penazova E, Tekielska D, Bohunicka M, Valentova L, Cmejla R, Morais D, Baldrian P.

Microb Ecol. 2018 Sep 7. doi: 10.1007/s00248-018-1250-9. [Epub ahead of print]

PMID:
30194483
10.

BTW-Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data.

Morais D, Roesch LFW, Redmile-Gordon M, Santos FG, Baldrian P, Andreote FD, Pylro VS.

PeerJ. 2018 Jul 30;6:e5299. doi: 10.7717/peerj.5299. eCollection 2018.

11.

Different twig litter (Salix caprea) diameter does affect microbial community activity and composition but not decay rate.

Angst Š, Baldrian P, Harantová L, Cajthaml T, Frouz J.

FEMS Microbiol Ecol. 2018 Sep 1;94(9). doi: 10.1093/femsec/fiy126.

PMID:
29961854
12.

The concept of operational taxonomic units revisited: genomes of bacteria that are regarded as closely related are often highly dissimilar.

Lladó Fernández S, Větrovský T, Baldrian P.

Folia Microbiol (Praha). 2019 Jan;64(1):19-23. doi: 10.1007/s12223-018-0627-y. Epub 2018 Jun 21.

PMID:
29926341
13.

Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples.

Jacobsen CS, Nielsen TK, Vester JK, Stougaard P, Nielsen JL, Voriskova J, Winding A, Baldrian P, Liu B, Frostegård Å, Pedersen D, Tveit AT, Svenning MM, Tebbe CC, Øvreås L, Jakobsen PB, Blazewicz SJ, Hubablek V, Bertilsson S, Hansen LH, Cary SC, Holben WE, Ekelund F, Bælum J.

Sci Rep. 2018 Apr 9;8(1):5711. doi: 10.1038/s41598-018-24082-y.

14.

Drivers of microbial community structure in forest soils.

Lladó S, López-Mondéjar R, Baldrian P.

Appl Microbiol Biotechnol. 2018 May;102(10):4331-4338. doi: 10.1007/s00253-018-8950-4. Epub 2018 Mar 30. Review.

PMID:
29600493
15.

Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling.

López-Mondéjar R, Brabcová V, Štursová M, Davidová A, Jansa J, Cajthaml T, Baldrian P.

ISME J. 2018 Jun;12(7):1768-1778. doi: 10.1038/s41396-018-0084-2. Epub 2018 Feb 28.

PMID:
29491492
16.

SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses.

Vetrovský T, Baldrian P, Morais D.

Bioinformatics. 2018 Jul 1;34(13):2292-2294. doi: 10.1093/bioinformatics/bty071.

17.

Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots.

Kohout P, Charvátová M, Štursová M, Mašínová T, Tomšovský M, Baldrian P.

ISME J. 2018 Mar;12(3):692-703. doi: 10.1038/s41396-017-0027-3. Epub 2018 Jan 15.

PMID:
29335638
18.

Bacteria associated with decomposing dead wood in a natural temperate forest.

Tláskal V, Zrustová P, Vrška T, Baldrian P.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix157.

PMID:
29126113
19.

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil.

Žifčáková L, Větrovský T, Lombard V, Henrissat B, Howe A, Baldrian P.

Microbiome. 2017 Sep 18;5(1):122. doi: 10.1186/s40168-017-0340-0.

20.

Microbial activity and the dynamics of ecosystem processes in forest soils.

Baldrian P.

Curr Opin Microbiol. 2017 Jun;37:128-134. doi: 10.1016/j.mib.2017.06.008. Epub 2017 Jul 6. Review.

PMID:
28689057
21.

Interactions of saprotrophic fungi with tree roots: can we observe the emergence of novel ectomycorrhizal fungi?

Baldrian P, Kohout P.

New Phytol. 2017 Jul;215(2):511-513. doi: 10.1111/nph.14665. No abstract available.

22.

Differential sensitivity of total and active soil microbial communities to drought and forest management.

Bastida F, Torres IF, Andrés-Abellán M, Baldrian P, López-Mondéjar R, Větrovský T, Richnow HH, Starke R, Ondoño S, García C, López-Serrano FR, Jehmlich N.

Glob Chang Biol. 2017 Oct;23(10):4185-4203. doi: 10.1111/gcb.13790. Epub 2017 Jul 6. Erratum in: Glob Chang Biol. 2018 Jan;24(1):552.

PMID:
28614633
23.

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change.

Lladó S, López-Mondéjar R, Baldrian P.

Microbiol Mol Biol Rev. 2017 Apr 12;81(2). pii: e00063-16. doi: 10.1128/MMBR.00063-16. Print 2017 Jun. Review.

24.

Community-level physiological profiling analyses show potential to identify the copiotrophic bacteria present in soil environments.

Lladó S, Baldrian P.

PLoS One. 2017 Feb 7;12(2):e0171638. doi: 10.1371/journal.pone.0171638. eCollection 2017.

25.

Statistical test for tolerability of effects of an antifungal biocontrol strain on fungal communities in three arable soils.

Antweiler K, Schreiter S, Keilwagen J, Baldrian P, Kropf S, Smalla K, Grosch R, Heuer H.

Microb Biotechnol. 2017 Mar;10(2):434-449. doi: 10.1111/1751-7915.12595. Epub 2017 Jan 23.

26.

Efficient screening of potential cellulases and hemicellulases produced by Bosea sp. FBZP-16 using the combination of enzyme assays and genome analysis.

Houfani AA, Větrovský T, Baldrian P, Benallaoua S.

World J Microbiol Biotechnol. 2017 Feb;33(2):29. doi: 10.1007/s11274-016-2198-x. Epub 2017 Jan 5.

PMID:
28058637
27.

Editorial: Special thematic issue on the ecology of soil microorganisms.

Baldrian P.

FEMS Microbiol Ecol. 2017 Feb;93(2). pii: fiw237. Epub 2016 Dec 2. No abstract available.

PMID:
27915282
28.

Libkindia masarykiana gen. et sp. nov., Yurkovia mendeliana gen. et sp. nov. and Leucosporidium krtinense f.a. sp. nov., isolated from temperate forest soils.

Mašínová T, Pontes A, Carvalho C, Sampaio JP, Baldrian P.

Int J Syst Evol Microbiol. 2017 Apr;67(4):902-908. doi: 10.1099/ijsem.0.001707. Epub 2017 May 5.

PMID:
27902349
29.

Forest microbiome: diversity, complexity and dynamics.

Baldrian P.

FEMS Microbiol Rev. 2017 Mar 1;41(2):109-130. doi: 10.1093/femsre/fuw040. Review.

PMID:
27856492
30.

Drivers of yeast community composition in the litter and soil of a temperate forest.

Mašínová T, Bahnmann BD, Větrovský T, Tomšovský M, Merunková K, Baldrian P.

FEMS Microbiol Ecol. 2017 Feb;93(2). pii: fiw223. Epub 2016 Oct 27.

PMID:
27789535
31.

Small-scale spatial heterogeneity of ecosystem properties, microbial community composition and microbial activities in a temperate mountain forest soil.

Štursová M, Bárta J, Šantrůčková H, Baldrian P.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw185. Epub 2016 Sep 7.

PMID:
27604254
32.

Bacterial succession on decomposing leaf litter exhibits a specific occurrence pattern of cellulolytic taxa and potential decomposers of fungal mycelia.

Tláskal V, Voříšková J, Baldrian P.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw177. doi: 10.1093/femsec/fiw177. Epub 2016 Aug 18.

PMID:
27543318
33.

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils.

Bastida F, Torres IF, Moreno JL, Baldrian P, Ondoño S, Ruiz-Navarro A, Hernández T, Richnow HH, Starke R, García C, Jehmlich N.

Mol Ecol. 2016 Sep;25(18):4660-73. doi: 10.1111/mec.13783. Epub 2016 Aug 26.

PMID:
27481114
34.

Comparative assessment of fungal augmentation treatments of a fine-textured and historically oil-contaminated soil.

Covino S, Stella T, D'Annibale A, Lladó S, Baldrian P, Čvančarová M, Cajthaml T, Petruccioli M.

Sci Total Environ. 2016 Oct 1;566-567:250-259. doi: 10.1016/j.scitotenv.2016.05.018. Epub 2016 May 21.

PMID:
27220102
35.

Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199.

López-Mondéjar R, Zühlke D, Větrovský T, Becher D, Riedel K, Baldrian P.

Biotechnol Biofuels. 2016 May 14;9:104. doi: 10.1186/s13068-016-0518-x. eCollection 2016.

36.

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems.

López-Mondéjar R, Zühlke D, Becher D, Riedel K, Baldrian P.

Sci Rep. 2016 Apr 29;6:25279. doi: 10.1038/srep25279.

37.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

38.

Aerobic bacterial catabolism of persistent organic pollutants - potential impact of biotic and abiotic interaction.

Jeon JR, Murugesan K, Baldrian P, Schmidt S, Chang YS.

Curr Opin Biotechnol. 2016 Apr;38:71-8. doi: 10.1016/j.copbio.2015.12.016. Epub 2016 Feb 4. Review.

PMID:
26851837
39.

Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community.

Brabcová V, Nováková M, Davidová A, Baldrian P.

New Phytol. 2016 Jun;210(4):1369-81. doi: 10.1111/nph.13849. Epub 2016 Feb 2.

40.

Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities.

Dini-Andreote F, Pylro VS, Baldrian P, van Elsas JD, Salles JF.

ISME J. 2016 Aug;10(8):1984-97. doi: 10.1038/ismej.2015.254. Epub 2016 Jan 29.

41.

Fungal Communities in Soils: Soil Organic Matter Degradation.

Větrovský T, Štursová M, Baldrian P.

Methods Mol Biol. 2016;1399:89-100. doi: 10.1007/978-1-4939-3369-3_5.

PMID:
26791498
42.

Silvibacterium bohemicum gen. nov. sp. nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park.

Lladó S, Benada O, Cajthaml T, Baldrian P, García-Fraile P.

Syst Appl Microbiol. 2016 Feb;39(1):14-9. doi: 10.1016/j.syapm.2015.12.005. Epub 2015 Dec 18.

PMID:
26774420
43.

Effects of the soil microbial community on mobile proportions and speciation of mercury (Hg) in contaminated soil.

Száková J, Havlíčková J, Šípková A, Gabriel J, Švec K, Baldrian P, Sysalová J, Coufalík P, Červenka R, Zvěřina O, Komárek J, Tlustoš P.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2016;51(4):364-70. doi: 10.1080/10934529.2015.1109413. Epub 2016 Jan 13.

PMID:
26761522
44.

Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation.

García-Fraile P, Benada O, Cajthaml T, Baldrian P, Lladó S.

Appl Environ Microbiol. 2015 Nov 6;82(2):560-9. doi: 10.1128/AEM.03353-15. Print 2016 Jan 15.

45.

Polycyclic aromatic hydrocarbons degradation and microbial community shifts during co-composting of creosote-treated wood.

Covino S, Fabianová T, Křesinová Z, Čvančarová M, Burianová E, Filipová A, Vořísková J, Baldrian P, Cajthaml T.

J Hazard Mater. 2016 Jan 15;301:17-26. doi: 10.1016/j.jhazmat.2015.08.023. Epub 2015 Aug 18.

PMID:
26342147
46.

Reply to Veresoglou: Overdependence on "significance" testing in biology.

Crowther TW, Maynard DS, Thomas SM, Baldrian P, Covey K, Frey SD, van Diepen LT, Bradford MA.

Proc Natl Acad Sci U S A. 2015 Sep 15;112(37):E5114. doi: 10.1073/pnas.1513283112. Epub 2015 Aug 25. No abstract available.

47.

The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities.

Větrovský T, Kolařík M, Žifčáková L, Zelenka T, Baldrian P.

Mol Ecol Resour. 2016 Mar;16(2):388-401. doi: 10.1111/1755-0998.12456. Epub 2015 Sep 4.

PMID:
26287723
48.

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter.

Žifčáková L, Větrovský T, Howe A, Baldrian P.

Environ Microbiol. 2016 Jan;18(1):288-301. doi: 10.1111/1462-2920.13026. Epub 2015 Oct 14.

PMID:
26286355
49.

Chemical and microbiological characterization of an aged PCB-contaminated soil.

Stella T, Covino S, Burianová E, Filipová A, Křesinová Z, Voříšková J, Větrovský T, Baldrian P, Cajthaml T.

Sci Total Environ. 2015 Nov 15;533:177-86. doi: 10.1016/j.scitotenv.2015.06.019. Epub 2015 Jul 5.

PMID:
26156136
50.

Biotic interactions mediate soil microbial feedbacks to climate change.

Crowther TW, Thomas SM, Maynard DS, Baldrian P, Covey K, Frey SD, van Diepen LT, Bradford MA.

Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):7033-8. doi: 10.1073/pnas.1502956112. Epub 2015 May 18.

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