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Items: 46

1.

Evolution-based screening enables genome-wide prioritization and discovery of DNA repair genes.

Brunette GJ, Jamalruddin MA, Baldock RA, Clark NL, Bernstein KA.

Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19593-19599. doi: 10.1073/pnas.1906559116. Epub 2019 Sep 9.

PMID:
31501324
2.

A 3D molecular atlas of the chick embryonic heart.

Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD.

Dev Biol. 2019 Jul 5. pii: S0012-1606(19)30401-4. doi: 10.1016/j.ydbio.2019.07.003. [Epub ahead of print]

PMID:
31283921
3.

Phosphorylation-mediated interactions with TOPBP1 couple 53BP1 and 9-1-1 to control the G1 DNA damage checkpoint.

Bigot N, Day M, Baldock RA, Watts FZ, Oliver AW, Pearl LH.

Elife. 2019 May 28;8. pii: e44353. doi: 10.7554/eLife.44353.

4.

RAD51D splice variants and cancer-associated mutations reveal XRCC2 interaction to be critical for homologous recombination.

Baldock RA, Pressimone CA, Baird JM, Khodakov A, Luong TT, Grundy MK, Smith CM, Karpenshif Y, Bratton-Palmer DS, Prakash R, Jasin M, Garcin EB, Gon S, Modesti M, Bernstein KA.

DNA Repair (Amst). 2019 Apr;76:99-107. doi: 10.1016/j.dnarep.2019.02.008. Epub 2019 Feb 23.

PMID:
30836272
5.

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.

Lu WT, Hawley BR, Skalka GL, Baldock RA, Smith EM, Bader AS, Malewicz M, Watts FZ, Wilczynska A, Bushell M.

Nat Commun. 2018 Feb 7;9(1):532. doi: 10.1038/s41467-018-02893-x.

6.

eHistology image and annotation data from the Kaufman Atlas of Mouse Development.

Baldock RA, Armit C.

Gigascience. 2018 Feb 1;7(2). doi: 10.1093/gigascience/gix131.

7.

eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis.

Armit C, Richardson L, Venkataraman S, Graham L, Burton N, Hill B, Yang Y, Baldock RA.

Dev Biol. 2017 Mar 1;423(1):1-11. doi: 10.1016/j.ydbio.2017.01.023. Epub 2017 Feb 2. Review.

8.

A strategy to discover new organizers identifies a putative heart organizer.

Anderson C, Khan MAF, Wong F, Solovieva T, Oliveira NMM, Baldock RA, Tickle C, Burt DW, Stern CD.

Nat Commun. 2016 Aug 25;7:12656. doi: 10.1038/ncomms12656.

9.

Human BRCA1-BARD1 ubiquitin ligase activity counteracts chromatin barriers to DNA resection.

Densham RM, Garvin AJ, Stone HR, Strachan J, Baldock RA, Daza-Martin M, Fletcher A, Blair-Reid S, Beesley J, Johal B, Pearl LH, Neely R, Keep NH, Watts FZ, Morris JR.

Nat Struct Mol Biol. 2016 Jul;23(7):647-55. doi: 10.1038/nsmb.3236. Epub 2016 May 30.

10.

Sumoylation of eIF4A2 affects stress granule formation.

Jongjitwimol J, Baldock RA, Morley SJ, Watts FZ.

J Cell Sci. 2016 Jun 15;129(12):2407-15. doi: 10.1242/jcs.184614. Epub 2016 May 9.

11.

ATM Localization and Heterochromatin Repair Depend on Direct Interaction of the 53BP1-BRCT2 Domain with γH2AX.

Baldock RA, Day M, Wilkinson OJ, Cloney R, Jeggo PA, Oliver AW, Watts FZ, Pearl LH.

Cell Rep. 2015 Dec 15;13(10):2081-9. doi: 10.1016/j.celrep.2015.10.074. Epub 2015 Nov 25.

12.

Developing the eHistology Atlas.

Richardson L, Graham L, Moss J, Burton N, Roochun Y, Armit C, Baldock RA.

Database (Oxford). 2015 Oct 24;2015. pii: bav105. doi: 10.1093/database/bav105. Print 2015.

13.

eMouseAtlas informatics: embryo atlas and gene expression database.

Armit C, Richardson L, Hill B, Yang Y, Baldock RA.

Mamm Genome. 2015 Oct;26(9-10):431-40. doi: 10.1007/s00335-015-9596-5. Epub 2015 Aug 22.

14.

Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data.

Hayamizu TF, Baldock RA, Ringwald M.

Mamm Genome. 2015 Oct;26(9-10):422-30. doi: 10.1007/s00335-015-9584-9. Epub 2015 Jul 25.

15.

An illustrated anatomical ontology of the developing mouse lower urogenital tract.

Georgas KM, Armstrong J, Keast JR, Larkins CE, McHugh KM, Southard-Smith EM, Cohn MJ, Batourina E, Dan H, Schneider K, Buehler DP, Wiese CB, Brennan J, Davies JA, Harding SD, Baldock RA, Little MH, Vezina CM, Mendelsohn C.

Development. 2015 May 15;142(10):1893-908. doi: 10.1242/dev.117903. Epub 2015 May 12.

16.

Constrained distance transforms for spatial atlas registration.

Hill B, Baldock RA.

BMC Bioinformatics. 2015 Mar 18;16:90. doi: 10.1186/s12859-015-0504-5.

17.

The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units.

de Bono B, Safaei S, Grenon P, Nickerson DP, Alexander S, Helvensteijn M, Kok JN, Kokash N, Wu A, Yu T, Hunter P, Baldock RA.

Front Physiol. 2015 Feb 24;6:24. doi: 10.3389/fphys.2015.00024. eCollection 2015.

18.

Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases.

Zaslavsky I, Baldock RA, Boline J.

Front Neuroinform. 2014 Sep 12;8:74. doi: 10.3389/fninf.2014.00074. eCollection 2014.

19.

EMAGE: Electronic Mouse Atlas of Gene Expression.

Richardson L, Stevenson P, Venkataraman S, Yang Y, Burton N, Rao J, Christiansen JH, Baldock RA, Davidson DR.

Methods Mol Biol. 2014;1092:61-79. doi: 10.1007/978-1-60327-292-6_5.

PMID:
24318814
20.

EMAGE mouse embryo spatial gene expression database: 2014 update.

Richardson L, Venkataraman S, Stevenson P, Yang Y, Moss J, Graham L, Burton N, Hill B, Rao J, Baldock RA, Armit C.

Nucleic Acids Res. 2014 Jan;42(Database issue):D835-44. doi: 10.1093/nar/gkt1155. Epub 2013 Nov 21.

21.

EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update.

Hayamizu TF, Wicks MN, Davidson DR, Burger A, Ringwald M, Baldock RA.

J Biomed Semantics. 2013 Aug 26;4(1):15. doi: 10.1186/2041-1480-4-15.

22.

eChickAtlas: an introduction to the database.

Wong F, Welten MC, Anderson C, Bain AA, Liu J, Wicks MN, Pavlovska G, Davey MG, Murphy P, Davidson D, Tickle CA, Stern CD, Baldock RA, Burt DW.

Genesis. 2013 May;51(5):365-71. doi: 10.1002/dvg.22374. Epub 2013 Mar 30.

PMID:
23355415
23.

Web tools for large-scale 3D biological images and atlases.

Husz ZL, Burton N, Hill B, Milyaev N, Baldock RA.

BMC Bioinformatics. 2012 Jun 7;13:122. doi: 10.1186/1471-2105-13-122.

24.

The Virtual Fly Brain browser and query interface.

Milyaev N, Osumi-Sutherland D, Reeve S, Burton N, Baldock RA, Armstrong JD.

Bioinformatics. 2012 Feb 1;28(3):411-5. doi: 10.1093/bioinformatics/btr677. Epub 2011 Dec 16.

PMID:
22180411
25.

Biomedical atlases: systematics, informatics and analysis.

Baldock RA, Burger A.

Adv Exp Med Biol. 2012;736:655-77. doi: 10.1007/978-1-4419-7210-1_39. Review.

PMID:
22161358
26.

The GUDMAP database--an online resource for genitourinary research.

Harding SD, Armit C, Armstrong J, Brennan J, Cheng Y, Haggarty B, Houghton D, Lloyd-MacGilp S, Pi X, Roochun Y, Sharghi M, Tindal C, McMahon AP, Gottesman B, Little MH, Georgas K, Aronow BJ, Potter SS, Brunskill EW, Southard-Smith EM, Mendelsohn C, Baldock RA, Davies JA, Davidson D.

Development. 2011 Jul;138(13):2845-53. doi: 10.1242/dev.063594.

27.

Automatically identifying and annotating mouse embryo gene expression patterns.

Han L, van Hemert JI, Baldock RA.

Bioinformatics. 2011 Apr 15;27(8):1101-7. doi: 10.1093/bioinformatics/btr105. Epub 2011 Feb 25.

28.

Digital atlasing and standardization in the mouse brain.

Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larson SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J.

PLoS Comput Biol. 2011 Feb 3;7(2):e1001065. doi: 10.1371/journal.pcbi.1001065. No abstract available. Erratum in: PLoS Comput Biol. 2011 Feb;7(2). doi: 10.1371/annotation/22c5808a-56cf-46e5-ba1b-456e838a5428. Larsen, Stephen D [corrected to Larson, Stephen D].

29.

A high-resolution anatomical atlas of the transcriptome in the mouse embryo.

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A.

PLoS Biol. 2011 Jan 18;9(1):e1000582. doi: 10.1371/journal.pbio.1000582.

30.

EMAGE mouse embryo spatial gene expression database: 2010 update.

Richardson L, Venkataraman S, Stevenson P, Yang Y, Burton N, Rao J, Fisher M, Baldock RA, Davidson DR, Christiansen JH.

Nucleic Acids Res. 2010 Jan;38(Database issue):D703-9. doi: 10.1093/nar/gkp763. Epub 2009 Sep 18.

31.

The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data.

Parkinson H, Aitken S, Baldock RA, Bard JB, Burger A, Hayamizu TF, Rector A, Ringwald M, Rogers J, Rosse C, Stoeckert CJ Jr, Davidson D.

Comp Funct Genomics. 2004;5(6-7):521-7. doi: 10.1002/cfg.434.

32.

Integrating technologies for comparing 3D gene expression domains in the developing chick limb.

Fisher ME, Clelland AK, Bain A, Baldock RA, Murphy P, Downie H, Tickle C, Davidson DR, Buckland RA.

Dev Biol. 2008 May 1;317(1):13-23. doi: 10.1016/j.ydbio.2008.01.031. Epub 2008 Feb 7.

33.

EMAGE--Edinburgh Mouse Atlas of Gene Expression: 2008 update.

Venkataraman S, Stevenson P, Yang Y, Richardson L, Burton N, Perry TP, Smith P, Baldock RA, Davidson DR, Christiansen JH.

Nucleic Acids Res. 2008 Jan;36(Database issue):D860-5. Epub 2007 Dec 12.

34.

A high-resolution anatomical ontology of the developing murine genitourinary tract.

Little MH, Brennan J, Georgas K, Davies JA, Davidson DR, Baldock RA, Beverdam A, Bertram JF, Capel B, Chiu HS, Clements D, Cullen-McEwen L, Fleming J, Gilbert T, Herzlinger D, Houghton D, Kaufman MH, Kleymenova E, Koopman PA, Lewis AG, McMahon AP, Mendelsohn CL, Mitchell EK, Rumballe BA, Sweeney DE, Valerius MT, Yamada G, Yang Y, Yu J.

Gene Expr Patterns. 2007 Jun;7(6):680-99. Epub 2007 Mar 23. Erratum in: Gene Expr Patterns. 2007 Dec;8(1):47-50.

35.

EMAGE: a spatial database of gene expression patterns during mouse embryo development.

Christiansen JH, Yang Y, Venkataraman S, Richardson L, Stevenson P, Burton N, Baldock RA, Davidson DR.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D637-41.

36.

EMAP and EMAGE: a framework for understanding spatially organized data.

Baldock RA, Bard JB, Burger A, Burton N, Christiansen J, Feng G, Hill B, Houghton D, Kaufman M, Rao J, Sharpe J, Ross A, Stevenson P, Venkataraman S, Waterhouse A, Yang Y, Davidson DR.

Neuroinformatics. 2003;1(4):309-25.

PMID:
15043218
37.

Spatial organization of active and inactive genes and noncoding DNA within chromosome territories.

Mahy NL, Perry PE, Gilchrist S, Baldock RA, Bickmore WA.

J Cell Biol. 2002 May 13;157(4):579-89. Epub 2002 May 6.

38.

Three-dimensional reconstruction of tetraploid<-->diploid chimaeric mouse blastocysts.

Everett CA, Stark MH, West JD, Davidson D, Baldock RA.

J Anat. 2000 Apr;196 ( Pt 3):341-6.

39.

A three-dimensional model of the mouse at embryonic day 9.

Brune RM, Bard JB, Dubreuil C, Guest E, Hill W, Kaufman M, Stark M, Davidson D, Baldock RA.

Dev Biol. 1999 Dec 15;216(2):457-68.

40.

Computer-generated three-dimensional reconstructions of serially sectioned mouse embryos.

Kaufman MH, Brune RM, Davidson DR, Baldock RA.

J Anat. 1998 Oct;193 ( Pt 3):323-36. Review.

41.

Elucidating the genetic networks of development: a bioinformatics approach.

Bard JB, Baldock RA, Davidson DR.

Genome Res. 1998 Sep;8(9):859-63. No abstract available.

42.

An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature.

Bard JL, Kaufman MH, Dubreuil C, Brune RM, Burger A, Baldock RA, Davidson DR.

Mech Dev. 1998 Jun;74(1-2):111-20.

43.

3-D Reconstructions for graphical databases of gene expression

Baldock RA, Verbeek FJ, Vonesch JL.

Semin Cell Dev Biol. 1997 Oct;8(5):499-507.

PMID:
9441955
44.

Plasticity of striatopallidal terminals following unilateral lesion of the dopaminergic nigrostriatal pathway: a morphological study.

Ingham CA, Hood SH, Mijnster MJ, Baldock RA, Arbuthnott GW.

Exp Brain Res. 1997 Aug;116(1):39-49.

PMID:
9305813
45.

Computer-aided 3-D reconstruction of serially sectioned mouse embryos: its use in integrating anatomical organization.

Kaufman MH, Brune RM, Baldock RA, Bard JB, Davidson D.

Int J Dev Biol. 1997 Apr;41(2):223-33. Review.

46.

Video camera calibration for optical densitometry.

Baldock RA, Poole I.

J Microsc. 1993 Oct;172(Pt 1):49-54.

PMID:
8289228

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