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Items: 1 to 50 of 87

1.

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.

Lu WT, Hawley BR, Skalka GL, Baldock RA, Smith EM, Bader AS, Malewicz M, Watts FZ, Wilczynska A, Bushell M.

Nat Commun. 2018 Feb 7;9(1):532. doi: 10.1038/s41467-018-02893-x.

2.

Constant-pressure nested sampling with atomistic dynamics.

Baldock RJN, Bernstein N, Salerno KM, Pártay LB, Csányi G.

Phys Rev E. 2017 Oct;96(4-1):043311. doi: 10.1103/PhysRevE.96.043311. Epub 2017 Oct 30.

PMID:
29347557
3.

eHistology image and annotation data from the Kaufman Atlas of Mouse Development.

Baldock RA, Armit C.

Gigascience. 2018 Feb 1;7(2). doi: 10.1093/gigascience/gix131.

4.

The 'straight mouse': defining anatomical axes in 3D embryo models.

Armit C, Hill B, Venkataraman S, McLeod K, Burger A, Baldock R.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax010.

5.

eMouseAtlas: An atlas-based resource for understanding mammalian embryogenesis.

Armit C, Richardson L, Venkataraman S, Graham L, Burton N, Hill B, Yang Y, Baldock RA.

Dev Biol. 2017 Mar 1;423(1):1-11. doi: 10.1016/j.ydbio.2017.01.023. Epub 2017 Feb 2. Review.

6.

A strategy to discover new organizers identifies a putative heart organizer.

Anderson C, Khan MA, Wong F, Solovieva T, Oliveira NM, Baldock RA, Tickle C, Burt DW, Stern CD.

Nat Commun. 2016 Aug 25;7:12656. doi: 10.1038/ncomms12656.

7.

PhenoImageShare: an image annotation and query infrastructure.

Adebayo S, McLeod K, Tudose I, Osumi-Sutherland D, Burdett T, Baldock R, Burger A, Parkinson H.

J Biomed Semantics. 2016 Jun 7;7:35. doi: 10.1186/s13326-016-0072-2.

8.

Human BRCA1-BARD1 ubiquitin ligase activity counteracts chromatin barriers to DNA resection.

Densham RM, Garvin AJ, Stone HR, Strachan J, Baldock RA, Daza-Martin M, Fletcher A, Blair-Reid S, Beesley J, Johal B, Pearl LH, Neely R, Keep NH, Watts FZ, Morris JR.

Nat Struct Mol Biol. 2016 Jul;23(7):647-55. doi: 10.1038/nsmb.3236. Epub 2016 May 30.

PMID:
27239795
9.

Sumoylation of eIF4A2 affects stress granule formation.

Jongjitwimol J, Baldock RA, Morley SJ, Watts FZ.

J Cell Sci. 2016 Jun 15;129(12):2407-15. doi: 10.1242/jcs.184614. Epub 2016 May 9.

10.

The Impact and Feasibility of Introducing Height-Adjustable Desks on Adolescents' Sitting in a Secondary School Classroom.

Sudholz B, Timperio A, Ridgers ND, Dunstan DW, Baldock R, Holland B, Salmon J.

AIMS Public Health. 2016 May 11;3(2):274-287. doi: 10.3934/publichealth.2016.2.274. eCollection 2016.

11.

ATM Localization and Heterochromatin Repair Depend on Direct Interaction of the 53BP1-BRCT2 Domain with γH2AX.

Baldock RA, Day M, Wilkinson OJ, Cloney R, Jeggo PA, Oliver AW, Watts FZ, Pearl LH.

Cell Rep. 2015 Dec 15;13(10):2081-9. doi: 10.1016/j.celrep.2015.10.074. Epub 2015 Nov 25.

12.

Developing the eHistology Atlas.

Richardson L, Graham L, Moss J, Burton N, Roochun Y, Armit C, Baldock RA.

Database (Oxford). 2015 Oct 24;2015. pii: bav105. doi: 10.1093/database/bav105. Print 2015.

13.

eMouseAtlas informatics: embryo atlas and gene expression database.

Armit C, Richardson L, Hill B, Yang Y, Baldock RA.

Mamm Genome. 2015 Oct;26(9-10):431-40. doi: 10.1007/s00335-015-9596-5. Epub 2015 Aug 22.

14.

Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data.

Hayamizu TF, Baldock RA, Ringwald M.

Mamm Genome. 2015 Oct;26(9-10):422-30. doi: 10.1007/s00335-015-9584-9. Epub 2015 Jul 25.

15.

The atlas of mouse development eHistology resource.

Graham E, Moss J, Burton N, Roochun Y, Armit C, Richardson L, Baldock R.

Development. 2015 Jul 15;142(14):2545. doi: 10.1242/dev.128181.

16.

Deducing the stage of origin of Wilms' tumours from a developmental series of Wt1-mutant mice.

Berry RL, Ozdemir DD, Aronow B, Lindström NO, Dudnakova T, Thornburn A, Perry P, Baldock R, Armit C, Joshi A, Jeanpierre C, Shan J, Vainio S, Baily J, Brownstein D, Davies J, Hastie ND, Hohenstein P.

Dis Model Mech. 2015 Aug 1;8(8):903-17. doi: 10.1242/dmm.018523. Epub 2015 May 14.

17.

The atlas of mouse development eHistology resource.

Graham E, Moss J, Burton N, Roochun Y, Armit C, Richardson L, Baldock R.

Development. 2015 Jun 1;142(11):1909-11. doi: 10.1242/dev.124917. Erratum in: Development. 2015 Jul 15;142(14):2545. Roochun, Yogmatee [added].

18.

An illustrated anatomical ontology of the developing mouse lower urogenital tract.

Georgas KM, Armstrong J, Keast JR, Larkins CE, McHugh KM, Southard-Smith EM, Cohn MJ, Batourina E, Dan H, Schneider K, Buehler DP, Wiese CB, Brennan J, Davies JA, Harding SD, Baldock RA, Little MH, Vezina CM, Mendelsohn C.

Development. 2015 May 15;142(10):1893-908. doi: 10.1242/dev.117903. Epub 2015 May 12.

19.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

20.

Constrained distance transforms for spatial atlas registration.

Hill B, Baldock RA.

BMC Bioinformatics. 2015 Mar 18;16:90. doi: 10.1186/s12859-015-0504-5.

21.

The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units.

de Bono B, Safaei S, Grenon P, Nickerson DP, Alexander S, Helvensteijn M, Kok JN, Kokash N, Wu A, Yu T, Hunter P, Baldock RA.

Front Physiol. 2015 Feb 24;6:24. doi: 10.3389/fphys.2015.00024. eCollection 2015.

22.

Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases.

Zaslavsky I, Baldock RA, Boline J.

Front Neuroinform. 2014 Sep 12;8:74. doi: 10.3389/fninf.2014.00074. eCollection 2014.

23.

Weighing up the possibilities: Controlling translation by ubiquitylation and sumoylation.

Watts FZ, Baldock R, Jongjitwimol J, Morley SJ.

Translation (Austin). 2014 Oct 30;2(2):e959366. doi: 10.4161/2169074X.2014.959366. eCollection 2014 Sep 1. Review.

24.

The S. pombe translation initiation factor eIF4G is Sumoylated and associates with the SUMO protease Ulp2.

Jongjitwimol J, Feng M, Zhou L, Wilkinson O, Small L, Baldock R, Taylor DL, Smith D, Bowler LD, Morley SJ, Watts FZ.

PLoS One. 2014 May 12;9(5):e94182. doi: 10.1371/journal.pone.0094182. eCollection 2014.

25.

Pleiotropic effects of Sox2 during the development of the zebrafish epithalamus.

Pavlou S, Astell K, Kasioulis I, Gakovic M, Baldock R, van Heyningen V, Coutinho P.

PLoS One. 2014 Jan 31;9(1):e87546. doi: 10.1371/journal.pone.0087546. eCollection 2014.

26.

EMAGE: Electronic Mouse Atlas of Gene Expression.

Richardson L, Stevenson P, Venkataraman S, Yang Y, Burton N, Rao J, Christiansen JH, Baldock RA, Davidson DR.

Methods Mol Biol. 2014;1092:61-79. doi: 10.1007/978-1-60327-292-6_5.

PMID:
24318814
27.

EMAGE mouse embryo spatial gene expression database: 2014 update.

Richardson L, Venkataraman S, Stevenson P, Yang Y, Moss J, Graham L, Burton N, Hill B, Rao J, Baldock RA, Armit C.

Nucleic Acids Res. 2014 Jan;42(Database issue):D835-44. doi: 10.1093/nar/gkt1155. Epub 2013 Nov 21.

28.

Functional tissue units and their primary tissue motifs in multi-scale physiology.

de Bono B, Grenon P, Baldock R, Hunter P.

J Biomed Semantics. 2013 Oct 8;4(1):22. doi: 10.1186/2041-1480-4-22.

29.

EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update.

Hayamizu TF, Wicks MN, Davidson DR, Burger A, Ringwald M, Baldock RA.

J Biomed Semantics. 2013 Aug 26;4(1):15. doi: 10.1186/2041-1480-4-15.

30.

Deciphering the Mechanisms of Developmental Disorders (DMDD): a new programme for phenotyping embryonic lethal mice.

Mohun T, Adams DJ, Baldock R, Bhattacharya S, Copp AJ, Hemberger M, Houart C, Hurles ME, Robertson E, Smith JC, Weaver T, Weninger W.

Dis Model Mech. 2013 May;6(3):562-6. doi: 10.1242/dmm.011957. Epub 2013 Mar 18.

31.

Bloomsbury report on mouse embryo phenotyping: recommendations from the IMPC workshop on embryonic lethal screening.

Adams D, Baldock R, Bhattacharya S, Copp AJ, Dickinson M, Greene ND, Henkelman M, Justice M, Mohun T, Murray SA, Pauws E, Raess M, Rossant J, Weaver T, West D.

Dis Model Mech. 2013 May;6(3):571-9. doi: 10.1242/dmm.011833. Epub 2013 Mar 18. Erratum in: Dis Model Mech. 2013 Jul;6(4):1049.

32.

eChickAtlas: an introduction to the database.

Wong F, Welten MC, Anderson C, Bain AA, Liu J, Wicks MN, Pavlovska G, Davey MG, Murphy P, Davidson D, Tickle CA, Stern CD, Baldock RA, Burt DW.

Genesis. 2013 May;51(5):365-71. doi: 10.1002/dvg.22374. Epub 2013 Mar 30.

PMID:
23355415
33.

eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome.

Armit C, Venkataraman S, Richardson L, Stevenson P, Moss J, Graham L, Ross A, Yang Y, Burton N, Rao J, Hill B, Rannie D, Wicks M, Davidson D, Baldock R.

Mamm Genome. 2012 Oct;23(9-10):514-24. doi: 10.1007/s00335-012-9407-1. Epub 2012 Jul 31.

34.

Web tools for large-scale 3D biological images and atlases.

Husz ZL, Burton N, Hill B, Milyaev N, Baldock RA.

BMC Bioinformatics. 2012 Jun 7;13:122. doi: 10.1186/1471-2105-13-122.

35.

Access and use of the GUDMAP database of genitourinary development.

Davies JA, Little MH, Aronow B, Armstrong J, Brennan J, Lloyd-MacGilp S, Armit C, Harding S, Piu X, Roochun Y, Haggarty B, Houghton D, Davidson D, Baldock R.

Methods Mol Biol. 2012;886:185-201. doi: 10.1007/978-1-61779-851-1_17.

PMID:
22639262
36.

The Virtual Fly Brain browser and query interface.

Milyaev N, Osumi-Sutherland D, Reeve S, Burton N, Baldock RA, Armstrong JD.

Bioinformatics. 2012 Feb 1;28(3):411-5. doi: 10.1093/bioinformatics/btr677. Epub 2011 Dec 16.

PMID:
22180411
37.

Biomedical atlases: systematics, informatics and analysis.

Baldock RA, Burger A.

Adv Exp Med Biol. 2012;736:655-77. doi: 10.1007/978-1-4419-7210-1_39. Review.

PMID:
22161358
38.

BioMart Central Portal: an open database network for the biological community.

Guberman JM, Ai J, Arnaiz O, Baran J, Blake A, Baldock R, Chelala C, Croft D, Cros A, Cutts RJ, Di Génova A, Forbes S, Fujisawa T, Gadaleta E, Goodstein DM, Gundem G, Haggarty B, Haider S, Hall M, Harris T, Haw R, Hu S, Hubbard S, Hsu J, Iyer V, Jones P, Katayama T, Kinsella R, Kong L, Lawson D, Liang Y, Lopez-Bigas N, Luo J, Lush M, Mason J, Moreews F, Ndegwa N, Oakley D, Perez-Llamas C, Primig M, Rivkin E, Rosanoff S, Shepherd R, Simon R, Skarnes B, Smedley D, Sperling L, Spooner W, Stevenson P, Stone K, Teague J, Wang J, Wang J, Whitty B, Wong DT, Wong-Erasmus M, Yao L, Youens-Clark K, Yung C, Zhang J, Kasprzyk A.

Database (Oxford). 2011 Sep 18;2011:bar041. doi: 10.1093/database/bar041. Print 2011.

39.

The BioMart interface to the eMouseAtlas gene expression database EMAGE.

Stevenson P, Richardson L, Venkataraman S, Yang Y, Baldock R.

Database (Oxford). 2011 Sep 18;2011:bar029. doi: 10.1093/database/bar029. Print 2011.

40.

The GUDMAP database--an online resource for genitourinary research.

Harding SD, Armit C, Armstrong J, Brennan J, Cheng Y, Haggarty B, Houghton D, Lloyd-MacGilp S, Pi X, Roochun Y, Sharghi M, Tindal C, McMahon AP, Gottesman B, Little MH, Georgas K, Aronow BJ, Potter SS, Brunskill EW, Southard-Smith EM, Mendelsohn C, Baldock RA, Davies JA, Davidson D.

Development. 2011 Jul;138(13):2845-53. doi: 10.1242/dev.063594.

41.

Automatically identifying and annotating mouse embryo gene expression patterns.

Han L, van Hemert JI, Baldock RA.

Bioinformatics. 2011 Apr 15;27(8):1101-7. doi: 10.1093/bioinformatics/btr105. Epub 2011 Feb 25.

42.

Digital atlasing and standardization in the mouse brain.

Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larson SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J.

PLoS Comput Biol. 2011 Feb 3;7(2):e1001065. doi: 10.1371/journal.pcbi.1001065. No abstract available. Erratum in: PLoS Comput Biol. 2011 Feb;7(2). doi: 10.1371/annotation/22c5808a-56cf-46e5-ba1b-456e838a5428. Larsen, Stephen D [corrected to Larson, Stephen D].

43.

A high-resolution anatomical atlas of the transcriptome in the mouse embryo.

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A.

PLoS Biol. 2011 Jan 18;9(1):e1000582. doi: 10.1371/journal.pbio.1000582.

44.

The HUDSEN Atlas: a three-dimensional (3D) spatial framework for studying gene expression in the developing human brain.

Kerwin J, Yang Y, Merchan P, Sarma S, Thompson J, Wang X, Sandoval J, Puelles L, Baldock R, Lindsay S.

J Anat. 2010 Oct;217(4):289-99. doi: 10.1111/j.1469-7580.2010.01290.x.

45.

The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium.

Ringwald M, Iyer V, Mason JC, Stone KR, Tadepally HD, Kadin JA, Bult CJ, Eppig JT, Oakley DJ, Briois S, Stupka E, Maselli V, Smedley D, Liu S, Hansen J, Baldock R, Hicks GG, Skarnes WC.

Nucleic Acids Res. 2011 Jan;39(Database issue):D849-55. doi: 10.1093/nar/gkq879. Epub 2010 Oct 6.

46.

Identification of genes downstream of the Shh signalling in the developing chick wing and syn-expressed with Hoxd13 using microarray and 3D computational analysis.

Bangs F, Welten M, Davey MG, Fisher M, Yin Y, Downie H, Paton B, Baldock R, Burt DW, Tickle C.

Mech Dev. 2010 Sep-Dec;127(9-12):428-41. doi: 10.1016/j.mod.2010.08.001. Epub 2010 Aug 12.

47.

Visualization of image data from cells to organisms.

Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK.

Nat Methods. 2010 Mar;7(3 Suppl):S26-41. doi: 10.1038/nmeth.1431. Review.

48.

From spatial-data to 3D models of the developing human brain.

Wang X, Lindsay S, Baldock R.

Methods. 2010 Feb;50(2):96-104. doi: 10.1016/j.ymeth.2009.09.006. Epub 2009 Oct 1.

PMID:
19800406
49.

EMAGE mouse embryo spatial gene expression database: 2010 update.

Richardson L, Venkataraman S, Stevenson P, Yang Y, Burton N, Rao J, Fisher M, Baldock RA, Davidson DR, Christiansen JH.

Nucleic Acids Res. 2010 Jan;38(Database issue):D703-9. doi: 10.1093/nar/gkp763. Epub 2009 Sep 18.

50.

The Mouse Limb Anatomy Atlas: an interactive 3D tool for studying embryonic limb patterning.

Delaurier A, Burton N, Bennett M, Baldock R, Davidson D, Mohun TJ, Logan MP.

BMC Dev Biol. 2008 Sep 15;8:83. doi: 10.1186/1471-213X-8-83.

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