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Items: 1 to 50 of 142

1.

A comparison of software for the evaluation of complex DNA profiles.

You Y, Balding D.

Forensic Sci Int Genet. 2019 Feb 13;40:114-119. doi: 10.1016/j.fsigen.2019.02.014. [Epub ahead of print]

PMID:
30798114
2.

A general framework for moment-based analysis of genetic data.

Speed MS, Balding DJ, Hobolth A.

J Math Biol. 2019 Jan 28. doi: 10.1007/s00285-018-01325-0. [Epub ahead of print]

PMID:
30734077
3.

A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.

Adhikari K, Mendoza-Revilla J, Sohail A, Fuentes-Guajardo M, Lampert J, Chacón-Duque JC, Hurtado M, Villegas V, Granja V, Acuña-Alonzo V, Jaramillo C, Arias W, Lozano RB, Everardo P, Gómez-Valdés J, Villamil-Ramírez H, Silva de Cerqueira CC, Hunemeier T, Ramallo V, Schuler-Faccini L, Salzano FM, Gonzalez-José R, Bortolini MC, Canizales-Quinteros S, Gallo C, Poletti G, Bedoya G, Rothhammer F, Tobin DJ, Fumagalli M, Balding D, Ruiz-Linares A.

Nat Commun. 2019 Jan 21;10(1):358. doi: 10.1038/s41467-018-08147-0.

4.

Bridging trees for posterior inference on ancestral recombination graphs.

Heine K, Beskos A, Jasra A, Balding D, De Iorio M.

Proc Math Phys Eng Sci. 2018 Dec;474(2220):20180568. doi: 10.1098/rspa.2018.0568. Epub 2018 Dec 12.

PMID:
30602937
5.

Latin Americans show wide-spread Converso ancestry and imprint of local Native ancestry on physical appearance.

Chacón-Duque JC, Adhikari K, Fuentes-Guajardo M, Mendoza-Revilla J, Acuña-Alonzo V, Barquera R, Quinto-Sánchez M, Gómez-Valdés J, Everardo Martínez P, Villamil-Ramírez H, Hünemeier T, Ramallo V, Silva de Cerqueira CC, Hurtado M, Villegas V, Granja V, Villena M, Vásquez R, Llop E, Sandoval JR, Salazar-Granara AA, Parolin ML, Sandoval K, Peñaloza-Espinosa RI, Rangel-Villalobos H, Winkler CA, Klitz W, Bravi C, Molina J, Corach D, Barrantes R, Gomes V, Resende C, Gusmão L, Amorim A, Xue Y, Dugoujon JM, Moral P, González-José R, Schuler-Faccini L, Salzano FM, Bortolini MC, Canizales-Quinteros S, Poletti G, Gallo C, Bedoya G, Rothhammer F, Balding D, Hellenthal G, Ruiz-Linares A.

Nat Commun. 2018 Dec 19;9(1):5388. doi: 10.1038/s41467-018-07748-z.

6.

SumHer better estimates the SNP heritability of complex traits from summary statistics.

Speed D, Balding DJ.

Nat Genet. 2019 Feb;51(2):277-284. doi: 10.1038/s41588-018-0279-5. Epub 2018 Dec 3.

PMID:
30510236
7.

How many individuals share a mitochondrial genome?

Andersen MM, Balding DJ.

PLoS Genet. 2018 Nov 1;14(11):e1007774. doi: 10.1371/journal.pgen.1007774. eCollection 2018 Nov.

8.

Y-profile evidence: Close paternal relatives and mixtures.

Andersen MM, Balding DJ.

Forensic Sci Int Genet. 2019 Jan;38:48-53. doi: 10.1016/j.fsigen.2018.10.004. Epub 2018 Oct 10.

PMID:
30340211
9.

Evaluating DNA evidence in a genetically complex population.

Hessab T, Aranha RS, Moura-Neto RS, Balding DJ, Schrago CG.

Forensic Sci Int Genet. 2018 Sep;36:141-147. doi: 10.1016/j.fsigen.2018.06.019. Epub 2018 Jun 28.

PMID:
29990826
10.

How convincing is a matching Y-chromosome profile?

Andersen MM, Balding DJ.

PLoS Genet. 2017 Nov 3;13(11):e1007028. doi: 10.1371/journal.pgen.1007028. eCollection 2017 Nov.

11.

Optimizing genomic medicine in epilepsy through a gene-customized approach to missense variant interpretation.

Traynelis J, Silk M, Wang Q, Berkovic SF, Liu L, Ascher DB, Balding DJ, Petrovski S.

Genome Res. 2017 Oct;27(10):1715-1729. doi: 10.1101/gr.226589.117. Epub 2017 Sep 1.

12.

In-frame seven amino-acid duplication in AIP arose over the last 3000 years, disrupts protein interaction and stability and is associated with gigantism.

Salvatori R, Radian S, Diekmann Y, Iacovazzo D, David A, Gabrovska P, Grassi G, Bussell AM, Stals K, Weber A, Quinton R, Crowne EC, Corazzini V, Metherell L, Kearney T, Du Plessis D, Sinha AK, Baborie A, Lecoq AL, Chanson P, Ansorge O, Ellard S, Trainer PJ, Balding D, Thomas MG, Korbonits M.

Eur J Endocrinol. 2017 Sep;177(3):257-266. doi: 10.1530/EJE-17-0293. Epub 2017 Jun 20.

13.

Reevaluation of SNP heritability in complex human traits.

Speed D, Cai N; UCLEB Consortium, Johnson MR, Nejentsev S, Balding DJ.

Nat Genet. 2017 Jul;49(7):986-992. doi: 10.1038/ng.3865. Epub 2017 May 22.

14.

GWAlpha: genome-wide estimation of additive effects (alpha) based on trait quantile distribution from pool-sequencing experiments.

Fournier-Level A, Robin C, Balding DJ.

Bioinformatics. 2017 Apr 15;33(8):1246-1247. doi: 10.1093/bioinformatics/btw805.

PMID:
28003266
15.

Erratum to 'Encoding of low-quality DNA profiles as genotype probability matrices for improved profile comparisons, relatedness evalation and database searches'. Forensic Science International: Genetics (2016) 227-239.

Ryan K, Williams DG, Balding DJ.

Forensic Sci Int Genet. 2017 Mar;27:189-190. doi: 10.1016/j.fsigen.2016.11.003. Epub 2016 Dec 9. No abstract available.

PMID:
27940064
16.

A comment on the PCAST report: Skip the "match"/"non-match" stage.

Morrison GS, Kaye DH, Balding DJ, Taylor D, Dawid P, Aitken CGG, Gittelson S, Zadora G, Robertson B, Willis S, Pope S, Neil M, Martire KA, Hepler A, Gill RD, Jamieson A, de Zoete J, Ostrum RB, Caliebe A.

Forensic Sci Int. 2017 Mar;272:e7-e9. doi: 10.1016/j.forsciint.2016.10.018. Epub 2016 Oct 26.

PMID:
27817943
17.

Encoding of low-quality DNA profiles as genotype probability matrices for improved profile comparisons, relatedness evaluation and database searches.

Ryan K, Williams DG, Balding DJ.

Forensic Sci Int Genet. 2016 Nov;25:227-239. doi: 10.1016/j.fsigen.2016.09.004. Epub 2016 Sep 21. Erratum in: Forensic Sci Int Genet. 2017 Mar;27:189-190.

PMID:
27768939
18.

Increased Population Risk of AIP-Related Acromegaly and Gigantism in Ireland.

Radian S, Diekmann Y, Gabrovska P, Holland B, Bradley L, Wallace H, Stals K, Bussell AM, McGurren K, Cuesta M, Ryan AW, Herincs M, Hernández-Ramírez LC, Holland A, Samuels J, Aflorei ED, Barry S, Dénes J, Pernicova I, Stiles CE, Trivellin G, McCloskey R, Ajzensztejn M, Abid N, Akker SA, Mercado M, Cohen M, Thakker RV, Baldeweg S, Barkan A, Musat M, Levy M, Orme SM, Unterländer M, Burger J, Kumar AV, Ellard S, McPartlin J, McManus R, Linden GJ, Atkinson B, Balding DJ, Agha A, Thompson CJ, Hunter SJ, Thomas MG, Morrison PJ, Korbonits M.

Hum Mutat. 2017 Jan;38(1):78-85. doi: 10.1002/humu.23121. Epub 2016 Oct 4.

19.

Using Genetic Distance to Infer the Accuracy of Genomic Prediction.

Scutari M, Mackay I, Balding D.

PLoS Genet. 2016 Sep 2;12(9):e1006288. doi: 10.1371/journal.pgen.1006288. eCollection 2016 Sep.

20.

Evaluation of low-template DNA profiles using peak heights.

Steele CD, Greenhalgh M, Balding DJ.

Stat Appl Genet Mol Biol. 2016 Oct 1;15(5):431-445. doi: 10.1515/sagmb-2016-0038.

PMID:
27416618
21.

A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation.

Adhikari K, Fuentes-Guajardo M, Quinto-Sánchez M, Mendoza-Revilla J, Camilo Chacón-Duque J, Acuña-Alonzo V, Jaramillo C, Arias W, Lozano RB, Pérez GM, Gómez-Valdés J, Villamil-Ramírez H, Hunemeier T, Ramallo V, Silva de Cerqueira CC, Hurtado M, Villegas V, Granja V, Gallo C, Poletti G, Schuler-Faccini L, Salzano FM, Bortolini MC, Canizales-Quinteros S, Cheeseman M, Rosique J, Bedoya G, Rothhammer F, Headon D, González-José R, Balding D, Ruiz-Linares A.

Nat Commun. 2016 May 19;7:11616. doi: 10.1038/ncomms11616.

22.

A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features.

Adhikari K, Fontanil T, Cal S, Mendoza-Revilla J, Fuentes-Guajardo M, Chacón-Duque JC, Al-Saadi F, Johansson JA, Quinto-Sanchez M, Acuña-Alonzo V, Jaramillo C, Arias W, Barquera Lozano R, Macín Pérez G, Gómez-Valdés J, Villamil-Ramírez H, Hunemeier T, Ramallo V, Silva de Cerqueira CC, Hurtado M, Villegas V, Granja V, Gallo C, Poletti G, Schuler-Faccini L, Salzano FM, Bortolini MC, Canizales-Quinteros S, Rothhammer F, Bedoya G, Gonzalez-José R, Headon D, López-Otín C, Tobin DJ, Balding D, Ruiz-Linares A.

Nat Commun. 2016 Mar 1;7:10815. doi: 10.1038/ncomms10815.

23.

Worldwide F(ST) estimates relative to five continental-scale populations.

Steele CD, Court DS, Balding DJ.

Ann Hum Genet. 2014 Nov;78(6):468-77. doi: 10.1111/ahg.12081.

24.

Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference.

van Dorp L, Balding D, Myers S, Pagani L, Tyler-Smith C, Bekele E, Tarekegn A, Thomas MG, Bradman N, Hellenthal G.

PLoS Genet. 2015 Aug 20;11(8):e1005397. doi: 10.1371/journal.pgen.1005397. eCollection 2015 Aug.

25.

A genome-wide association study identifies multiple loci for variation in human ear morphology.

Adhikari K, Reales G, Smith AJ, Konka E, Palmen J, Quinto-Sanchez M, Acuña-Alonzo V, Jaramillo C, Arias W, Fuentes M, Pizarro M, Barquera Lozano R, Macín Pérez G, Gómez-Valdés J, Villamil-Ramírez H, Hunemeier T, Ramallo V, Silva de Cerqueira CC, Hurtado M, Villegas V, Granja V, Gallo C, Poletti G, Schuler-Faccini L, Salzano FM, Bortolini MC, Canizales-Quinteros S, Rothhammer F, Bedoya G, Calderón R, Rosique J, Cheeseman M, Bhutta MF, Humphries SE, Gonzalez-José R, Headon D, Balding D, Ruiz-Linares A.

Nat Commun. 2015 Jun 24;6:7500. doi: 10.1038/ncomms8500.

26.

Integrating dynamic mixed-effect modelling and penalized regression to explore genetic association with pharmacokinetics.

Bertrand J, De Iorio M, Balding DJ.

Pharmacogenet Genomics. 2015 May;25(5):231-8. doi: 10.1097/FPC.0000000000000127.

27.

The genomic and phenotypic diversity of Schizosaccharomyces pombe.

Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O'Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J.

Nat Genet. 2015 Mar;47(3):235-41. doi: 10.1038/ng.3215. Epub 2015 Feb 9.

28.

Bayesian models for syndrome- and gene-specific probabilities of novel variant pathogenicity.

Ruklisa D, Ware JS, Walsh R, Balding DJ, Cook SA.

Genome Med. 2015 Jan 28;7(1):5. doi: 10.1186/s13073-014-0120-4. eCollection 2015.

29.

A simulation approach for change-points on phylogenetic trees.

Persing A, Jasra A, Beskos A, Balding D, De Iorio M.

J Comput Biol. 2015 Jan;22(1):10-24. doi: 10.1089/cmb.2014.0218.

30.

Choice of population database for forensic DNA profile analysis.

Steele CD, Balding DJ.

Sci Justice. 2014 Dec;54(6):487-93. doi: 10.1016/j.scijus.2014.10.004. Epub 2014 Nov 7.

31.

Identification of the remains of King Richard III.

King TE, Fortes GG, Balaresque P, Thomas MG, Balding D, Maisano Delser P, Neumann R, Parson W, Knapp M, Walsh S, Tonasso L, Holt J, Kayser M, Appleby J, Forster P, Ekserdjian D, Hofreiter M, Schürer K.

Nat Commun. 2014 Dec 2;5:5631. doi: 10.1038/ncomms6631.

32.

Relatedness in the post-genomic era: is it still useful?

Speed D, Balding DJ.

Nat Rev Genet. 2015 Jan;16(1):33-44. doi: 10.1038/nrg3821. Epub 2014 Nov 18. Review.

PMID:
25404112
33.

Applying association mapping and genomic selection to the dissection of key traits in elite European wheat.

Bentley AR, Scutari M, Gosman N, Faure S, Bedford F, Howell P, Cockram J, Rose GA, Barber T, Irigoyen J, Horsnell R, Pumfrey C, Winnie E, Schacht J, Beauchêne K, Praud S, Greenland A, Balding D, Mackay IJ.

Theor Appl Genet. 2014 Dec;127(12):2619-33. doi: 10.1007/s00122-014-2403-y. Epub 2014 Oct 2.

PMID:
25273129
34.

Admixture in Latin America: geographic structure, phenotypic diversity and self-perception of ancestry based on 7,342 individuals.

Ruiz-Linares A, Adhikari K, Acuña-Alonzo V, Quinto-Sanchez M, Jaramillo C, Arias W, Fuentes M, Pizarro M, Everardo P, de Avila F, Gómez-Valdés J, León-Mimila P, Hunemeier T, Ramallo V, Silva de Cerqueira CC, Burley MW, Konca E, de Oliveira MZ, Veronez MR, Rubio-Codina M, Attanasio O, Gibbon S, Ray N, Gallo C, Poletti G, Rosique J, Schuler-Faccini L, Salzano FM, Bortolini MC, Canizales-Quinteros S, Rothhammer F, Bedoya G, Balding D, Gonzalez-José R.

PLoS Genet. 2014 Sep 25;10(9):e1004572. doi: 10.1371/journal.pgen.1004572. eCollection 2014 Sep.

35.

Multiple quantitative trait analysis using bayesian networks.

Scutari M, Howell P, Balding DJ, Mackay I.

Genetics. 2014 Sep;198(1):129-37. doi: 10.1534/genetics.114.165704.

36.

Verifying likelihoods for low template DNA profiles using multiple replicates.

Steele CD, Greenhalgh M, Balding DJ.

Forensic Sci Int Genet. 2014 Nov;13:82-9. doi: 10.1016/j.fsigen.2014.06.018. Epub 2014 Jul 10.

37.

Describing the genetic architecture of epilepsy through heritability analysis.

Speed D, O'Brien TJ, Palotie A, Shkura K, Marson AG, Balding DJ, Johnson MR.

Brain. 2014 Oct;137(Pt 10):2680-9. doi: 10.1093/brain/awu206. Epub 2014 Jul 26.

38.

MultiBLUP: improved SNP-based prediction for complex traits.

Speed D, Balding DJ.

Genome Res. 2014 Sep;24(9):1550-7. doi: 10.1101/gr.169375.113. Epub 2014 Jun 24.

39.

Storytelling and story testing in domestication.

Gerbault P, Allaby RG, Boivin N, Rudzinski A, Grimaldi IM, Pires JC, Climer Vigueira C, Dobney K, Gremillion KJ, Barton L, Arroyo-Kalin M, Purugganan MD, Rubio de Casas R, Bollongino R, Burger J, Fuller DQ, Bradley DG, Balding DJ, Richerson PJ, Gilbert MT, Larson G, Thomas MG.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6159-64. doi: 10.1073/pnas.1400425111. Epub 2014 Apr 21.

40.

Interaction between gas cooking and GSTM1 null genotype in bronchial responsiveness: results from the European Community Respiratory Health Survey.

Amaral AF, Ramasamy A, Castro-Giner F, Minelli C, Accordini S, Sørheim IC, Pin I, Kogevinas M, Jõgi R, Balding DJ, Norbäck D, Verlato G, Olivieri M, Probst-Hensch N, Janson C, Zock JP, Heinrich J, Jarvis DL.

Thorax. 2014 Jun;69(6):558-64. doi: 10.1136/thoraxjnl-2013-204574. Epub 2014 Mar 10.

41.

Response to Lee et al.: SNP-based heritability analysis with dense data.

Speed D, Hemani G, Johnson MR, Balding DJ.

Am J Hum Genet. 2013 Dec 5;93(6):1155-7. doi: 10.1016/j.ajhg.2013.10.016. No abstract available.

42.

Dysregulation of complement system and CD4+ T cell activation pathways implicated in allergic response.

Couto Alves A, Bruhn S, Ramasamy A, Wang H, Holloway JW, Hartikainen AL, Jarvelin MR, Benson M, Balding DJ, Coin LJ.

PLoS One. 2013 Oct 8;8(10):e74821. doi: 10.1371/journal.pone.0074821. eCollection 2013.

43.

Integrated analysis of genome-wide genetic and epigenetic association data for identification of disease mechanisms.

Ke X, Cortina-Borja M, Silva BC, Lowe R, Rakyan V, Balding D.

Epigenetics. 2013 Nov;8(11):1236-44. doi: 10.4161/epi.26407. Epub 2013 Sep 26.

PMID:
24071862
44.

A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.

Speed D, Hoggart C, Petrovski S, Tachmazidou I, Coffey A, Jorgensen A, Eleftherohorinou H, De Iorio M, Todaro M, De T, Smith D, Smith PE, Jackson M, Cooper P, Kellett M, Howell S, Newton M, Yerra R, Tan M, French C, Reuber M, Sills GE, Chadwick D, Pirmohamed M, Bentley D, Scheffer I, Berkovic S, Balding D, Palotie A, Marson A, O'Brien TJ, Johnson MR.

Hum Mol Genet. 2014 Jan 1;23(1):247-58. doi: 10.1093/hmg/ddt403. Epub 2013 Aug 19.

45.

Evaluating forensic DNA profiles using peak heights, allowing for multiple donors, allelic dropout and stutters.

Puch-Solis R, Rodgers L, Mazumder A, Pope S, Evett I, Curran J, Balding D.

Forensic Sci Int Genet. 2013 Sep;7(5):555-63. doi: 10.1016/j.fsigen.2013.05.009. Epub 2013 Jul 11.

PMID:
23948327
46.

Improving the efficiency of genomic selection.

Scutari M, Mackay I, Balding D.

Stat Appl Genet Mol Biol. 2013 Aug;12(4):517-27. doi: 10.1515/sagmb-2013-0002.

PMID:
23934612
47.

Evaluation of mixed-source, low-template DNA profiles in forensic science.

Balding DJ.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12241-6. doi: 10.1073/pnas.1219739110. Epub 2013 Jul 1.

48.

Genetic screening for Niemann-Pick disease type C in adults with neurological and psychiatric symptoms: findings from the ZOOM study.

Bauer P, Balding DJ, Klünemann HH, Linden DE, Ory DS, Pineda M, Priller J, Sedel F, Muller A, Chadha-Boreham H, Welford RW, Strasser DS, Patterson MC.

Hum Mol Genet. 2013 Nov 1;22(21):4349-56. doi: 10.1093/hmg/ddt284. Epub 2013 Jun 16.

49.

Multiple single nucleotide polymorphism analysis using penalized regression in nonlinear mixed-effect pharmacokinetic models.

Bertrand J, Balding DJ.

Pharmacogenet Genomics. 2013 Mar;23(3):167-74. doi: 10.1097/FPC.0b013e32835dd22c.

PMID:
23337849
50.

Improved heritability estimation from genome-wide SNPs.

Speed D, Hemani G, Johnson MR, Balding DJ.

Am J Hum Genet. 2012 Dec 7;91(6):1011-21. doi: 10.1016/j.ajhg.2012.10.010.

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