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Items: 1 to 50 of 95

1.

Directed Nucleosome Sliding during the Formation of the Simian Virus 40 Particle Exposes DNA Sequences Required for Early Transcription.

Kumar MA, Kasti K, Balakrishnan L, Milavetz B.

J Virol. 2019 Feb 5;93(4). pii: e01678-18. doi: 10.1128/JVI.01678-18. Print 2019 Feb 15.

PMID:
30518654
2.

Identification of a Novel Splice Variant of Neural Cell Adhesion Molecule in Glioblastoma Through Proteogenomics Analysis.

Jayaram S, Balakrishnan L, Singh M, Zabihi A, Ganesh RA, Mangalaparthi KK, Sonpatki P, Gupta MK, Amaresha CB, Prasad K, Mariswamappa K, Pillai S, Lakshmikantha A, Shah N, Sirdeshmukh R.

OMICS. 2018 Jun;22(6):437-448. doi: 10.1089/omi.2017.0220.

PMID:
29927716
3.

Exposures to fine particulate matter (PM2.5) and birthweight in a rural-urban, mother-child cohort in Tamil Nadu, India.

Balakrishnan K, Ghosh S, Thangavel G, Sambandam S, Mukhopadhyay K, Puttaswamy N, Sadasivam A, Ramaswamy P, Johnson P, Kuppuswamy R, Natesan D, Maheshwari U, Natarajan A, Rajendran G, Ramasami R, Madhav S, Manivannan S, Nargunanadan S, Natarajan S, Saidam S, Chakraborty M, Balakrishnan L, Thanasekaraan V.

Environ Res. 2018 Feb;161:524-531. doi: 10.1016/j.envres.2017.11.050.

PMID:
29227900
4.

Epigenetic Regulation of Viral Biological Processes.

Balakrishnan L, Milavetz B.

Viruses. 2017 Nov 17;9(11). pii: E346. doi: 10.3390/v9110346. Review.

5.

Epigenetic Analysis of SV40 Minichromosomes.

Balakrishnan L, Milavetz B.

Curr Protoc Microbiol. 2017 Aug 11;46:14F.3.1-14F.3.26. doi: 10.1002/cpmc.35.

6.

Lung function in relation to farm dwelling and farming activities in rural dwelling children.

Balakrishnan L, Rennie D, Dosman J, Pahwa P, Karunanayake C, Hagel L, Lawson J.

Respirology. 2017 Oct;22(7):1320-1328. doi: 10.1111/resp.13097. Epub 2017 Jun 27.

PMID:
28653785
7.

Dorsal Sural Sensory Nerve Action Potential: A Study for Reference Values.

Chaudhari SC, Mansukhani KA, Sharma A, Balakrishnan L, Sreenivasan A.

Ann Indian Acad Neurol. 2017 Apr-Jun;20(2):127-131. doi: 10.4103/0972-2327.194313.

8.

Nucleosome positioning in the regulatory region of SV40 chromatin correlates with the activation and repression of early and late transcription during infection.

Kumar MA, Christensen K, Woods B, Dettlaff A, Perley D, Scheidegger A, Balakrishnan L, Milavetz B.

Virology. 2017 Mar;503:62-69. doi: 10.1016/j.virol.2016.12.023. Epub 2017 Jan 23.

9.

HMGB1 Stimulates Activity of Polymerase β on Nucleosome Substrates.

Balliano A, Hao F, Njeri C, Balakrishnan L, Hayes JJ.

Biochemistry. 2017 Jan 31;56(4):647-656. doi: 10.1021/acs.biochem.6b00569. Epub 2017 Jan 18.

10.

Sample preparation method considerations for integrated transcriptomic and proteomic analysis of tumors.

Bhat AR, Gupta MK, Krithivasan P, Dhas K, Nair J, Reddy RB, Sudheendra HV, Chavan S, Vardhan H, Darsi S, Balakrishnan L, Katragadda S, Kekatpure V, Suresh A, Tata P, Panda B, Kuriakose MA, Sirdeshmukh R.

Proteomics Clin Appl. 2017 Mar;11(3-4). doi: 10.1002/prca.201600100. Epub 2016 Nov 28.

PMID:
27801551
11.

Sural sensory nerve action potential: A study in healthy Indian subjects.

Sreenivasan A, Mansukhani KA, Sharma A, Balakrishnan L.

Ann Indian Acad Neurol. 2016 Jul-Sep;19(3):312-7. doi: 10.4103/0972-2327.186786.

12.

Signaling network map of the aryl hydrocarbon receptor.

Yelamanchi SD, Solanki HS, Radhakrishnan A, Balakrishnan L, Advani J, Raja R, Sahasrabuddhe NA, Mathur PP, Dutta P, Prasad TS, Korbonits M, Chatterjee A, Gowda H, Mukherjee KK.

J Cell Commun Signal. 2016 Dec;10(4):341-346. Epub 2016 Jul 27. No abstract available.

13.

Synovial fluid proteome in rheumatoid arthritis.

Bhattacharjee M, Balakrishnan L, Renuse S, Advani J, Goel R, Sathe G, Keshava Prasad TS, Nair B, Jois R, Shankar S, Pandey A.

Clin Proteomics. 2016 Jun 5;13:12. doi: 10.1186/s12014-016-9113-1. eCollection 2016.

14.

Acetylation regulates DNA repair mechanisms in human cells.

Piekna-Przybylska D, Bambara RA, Balakrishnan L.

Cell Cycle. 2016 Jun 2;15(11):1506-17. doi: 10.1080/15384101.2016.1176815. Epub 2016 Apr 22.

15.

A network map of Interleukin-10 signaling pathway.

Verma R, Balakrishnan L, Sharma K, Khan AA, Advani J, Gowda H, Tripathy SP, Suar M, Pandey A, Gandotra S, Prasad TS, Shankar S.

J Cell Commun Signal. 2016 Mar;10(1):61-7. doi: 10.1007/s12079-015-0302-x. Epub 2015 Aug 8.

16.

Data from human salivary proteome - A resource of potential biomarkers for oral cancer.

Sivadasan P, Kumar Gupta M, Sathe GJ, Balakrishnan L, Palit P, Gowda H, Suresh A, Abraham Kuriakose M, Sirdeshmukh R.

Data Brief. 2015 Jul 2;4:374-8. doi: 10.1016/j.dib.2015.06.014. eCollection 2015 Sep.

17.

Differential resistance of human embryonic stem cells and somatic cell types to hydrogen peroxide-induced genotoxicity may be dependent on innate basal intracellular ROS levels.

Vinoth KJ, Manikandan J, Sethu S, Balakrishnan L, Heng A, Lu K, Poonepalli A, Hande MP, Cao T.

Folia Histochem Cytobiol. 2015;53(2):169-74. doi: 10.5603/FHC.a2015.0016. Epub 2015 Jul 9.

18.

A knowledgebase resource for interleukin-17 family mediated signaling.

Sharma J, Balakrishnan L, Datta KK, Sahasrabuddhe NA, Khan AA, Sahu A, Singhal A, Getnet D, Raju R, Chatterjee A, Gowda H, Keshava Prasad TS, Shankar S, Pandey A.

J Cell Commun Signal. 2015 Sep;9(3):291-6. doi: 10.1007/s12079-015-0297-3. Epub 2015 Jun 16.

19.

Human salivary proteome--a resource of potential biomarkers for oral cancer.

Sivadasan P, Gupta MK, Sathe GJ, Balakrishnan L, Palit P, Gowda H, Suresh A, Kuriakose MA, Sirdeshmukh R.

J Proteomics. 2015 Sep 8;127(Pt A):89-95. doi: 10.1016/j.jprot.2015.05.039. Epub 2015 Jun 12.

PMID:
26073025
20.

Proteomics of human aqueous humor.

Murthy KR, Rajagopalan P, Pinto SM, Advani J, Murthy PR, Goel R, Subbannayya Y, Balakrishnan L, Dash M, Anil AK, Manda SS, Nirujogi RS, Kelkar DS, Sathe GJ, Dey G, Chatterjee A, Gowda H, Chakravarti S, Shankar S, Sahasrabuddhe NA, Nair B, Somani BL, Prasad TS, Pandey A.

OMICS. 2015 May;19(5):283-93. doi: 10.1089/omi.2015.0029.

PMID:
25933257
21.

Valganciclovir inhibits human adenovirus replication and pathology in permissive immunosuppressed female and male Syrian hamsters.

Toth K, Ying B, Tollefson AE, Spencer JF, Balakrishnan L, Sagartz JE, Buller RM, Wold WS.

Viruses. 2015 Mar 23;7(3):1409-28. doi: 10.3390/v7031409.

22.

Viral epigenetics.

Milavetz BI, Balakrishnan L.

Methods Mol Biol. 2015;1238:569-96. doi: 10.1007/978-1-4939-1804-1_30. Review.

23.

Ganciclovir inhibits human adenovirus replication and pathogenicity in permissive immunosuppressed Syrian hamsters.

Ying B, Tollefson AE, Spencer JF, Balakrishnan L, Dewhurst S, Capella C, Buller RM, Toth K, Wold WS.

Antimicrob Agents Chemother. 2014 Dec;58(12):7171-81. doi: 10.1128/AAC.03860-14. Epub 2014 Sep 15.

24.

The 9-1-1 checkpoint clamp stimulates DNA resection by Dna2-Sgs1 and Exo1.

Ngo GH, Balakrishnan L, Dubarry M, Campbell JL, Lydall D.

Nucleic Acids Res. 2014;42(16):10516-28. doi: 10.1093/nar/gku746. Epub 2014 Aug 13.

25.

Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.

Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, Pinto SM, Mitchell CJ, Madugundu AK, Kumar P, Sharma J, Advani J, Dey G, Balakrishnan L, Syed N, Nanjappa V, Subbannayya Y, Goel R, Prasad TS, Bafna V, Sirdeshmukh R, Gowda H, Wang C, Leach SD, Pandey A.

Mol Cell Proteomics. 2014 Nov;13(11):3184-98. doi: 10.1074/mcp.M114.038299. Epub 2014 Jul 24.

26.

A draft map of the human proteome.

Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A.

Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302.

27.

Evaluation of human embryonic stem cells and their differentiated fibroblastic progenies as cellular models for in vitro genotoxicity screening.

Vinoth KJ, Manikandan J, Sethu S, Balakrishnan L, Heng A, Lu K, Hande MP, Cao T.

J Biotechnol. 2014 Aug 20;184:154-68. doi: 10.1016/j.jbiotec.2014.05.009. Epub 2014 May 23.

PMID:
24862194
28.

Pancreatic Cancer Database: an integrative resource for pancreatic cancer.

Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, Prasad TS, Maitra A, Gowda H, Hruban RH, Pandey A.

Cancer Biol Ther. 2014 Aug;15(8):963-7. doi: 10.4161/cbt.29188. Epub 2014 May 19.

29.

A Network Map of FGF-1/FGFR Signaling System.

Raju R, Palapetta SM, Sandhya VK, Sahu A, Alipoor A, Balakrishnan L, Advani J, George B, Kini KR, Geetha NP, Prakash HS, Prasad TS, Chang YJ, Chen L, Pandey A, Gowda H.

J Signal Transduct. 2014;2014:962962. doi: 10.1155/2014/962962. Epub 2014 Apr 16. Review.

30.

Functional annotation of proteome encoded by human chromosome 22.

Pinto SM, Manda SS, Kim MS, Taylor K, Selvan LD, Balakrishnan L, Subbannayya T, Yan F, Prasad TS, Gowda H, Lee C, Hancock WS, Pandey A.

J Proteome Res. 2014 Jun 6;13(6):2749-60. doi: 10.1021/pr401169d. Epub 2014 Apr 29.

31.

Proteomic analysis of human osteoarthritis synovial fluid.

Balakrishnan L, Nirujogi RS, Ahmad S, Bhattacharjee M, Manda SS, Renuse S, Kelkar DS, Subbannayya Y, Raju R, Goel R, Thomas JK, Kaur N, Dhillon M, Tankala SG, Jois R, Vasdev V, Ramachandra Y, Sahasrabuddhe NA, Prasad TsK, Mohan S, Gowda H, Shankar S, Pandey A.

Clin Proteomics. 2014 Feb 17;11(1):6. doi: 10.1186/1559-0275-11-6.

32.

Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients.

Balakrishnan L, Bhattacharjee M, Ahmad S, Nirujogi RS, Renuse S, Subbannayya Y, Marimuthu A, Srikanth SM, Raju R, Dhillon M, Kaur N, Jois R, Vasudev V, Ramachandra Y, Sahasrabuddhe NA, Prasad TsK, Mohan S, Gowda H, Shankar S, Pandey A.

Clin Proteomics. 2014 Jan 6;11(1):1. doi: 10.1186/1559-0275-11-1.

33.

Erratum: Transcription and replication result in distinct epigenetic marks following repression of early gene expression.

Milavetz B, Kallestad L, Woods E, Christensen K, Gefroh A, Balakrishnan L.

Front Genet. 2013 Dec 2;4:259. doi: 10.3389/fgene.2013.00259. No abstract available.

34.

Plasma Proteome Database as a resource for proteomics research: 2014 update.

Nanjappa V, Thomas JK, Marimuthu A, Muthusamy B, Radhakrishnan A, Sharma R, Ahmad Khan A, Balakrishnan L, Sahasrabuddhe NA, Kumar S, Jhaveri BN, Sheth KV, Kumar Khatana R, Shaw PG, Srikanth SM, Mathur PP, Shankar S, Nagaraja D, Christopher R, Mathivanan S, Raju R, Sirdeshmukh R, Chatterjee A, Simpson RJ, Harsha HC, Pandey A, Prasad TS.

Nucleic Acids Res. 2014 Jan;42(Database issue):D959-65. doi: 10.1093/nar/gkt1251. Epub 2013 Dec 3.

35.

A multilectin affinity approach for comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy.

Bhattacharjee M, Sharma R, Goel R, Balakrishnan L, Renuse S, Advani J, Gupta ST, Verma R, Pinto SM, Sekhar NR, Nair B, Prasad TSK, Harsha HC, Jois R, Shankar S, Pandey A.

Clin Proteomics. 2013 Sep 6;10(1):11. doi: 10.1186/1559-0275-10-11.

36.

Transcription and replication result in distinct epigenetic marks following repression of early gene expression.

Kallestad L, Woods E, Christensen K, Gefroh A, Balakrishnan L, Milavetz B.

Front Genet. 2013 Jul 30;4:140. doi: 10.3389/fgene.2013.00140. eCollection 2013. Erratum in: Front Genet. 2013;4:259. Front Genet. 2013;4:259.

37.

IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase.

Balakrishnan L, Soman S, Patil YB, Advani J, Thomas JK, Desai DV, Kulkarni-Kale U, Harsha HC, Prasad TS, Raju R, Pandey A, Dimitriadis E, Chatterjee A.

Cell Commun Adhes. 2013 Aug;20(3-4):81-6. doi: 10.3109/15419061.2013.791683. Epub 2013 Apr 30.

PMID:
23631681
38.

An integrated map of corticotropin-releasing hormone signaling pathway.

Subbannayya T, Balakrishnan L, Sudarshan G, Advani J, Kumar S, Mahmood R, Nair B, Sirdeshmukh R, Mukherjee KK, Umathe SN, Raju R, Prasad TS.

J Cell Commun Signal. 2013 Dec;7(4):295-300. doi: 10.1007/s12079-013-0197-3. Epub 2013 Mar 16. No abstract available.

39.

Flap endonuclease 1.

Balakrishnan L, Bambara RA.

Annu Rev Biochem. 2013;82:119-38. doi: 10.1146/annurev-biochem-072511-122603. Epub 2013 Feb 28. Review.

40.

Okazaki fragment metabolism.

Balakrishnan L, Bambara RA.

Cold Spring Harb Perspect Biol. 2013 Feb 1;5(2). pii: a010173. doi: 10.1101/cshperspect.a010173. Review.

41.

SILAC-based quantitative proteomic analysis of gastric cancer secretome.

Marimuthu A, Subbannayya Y, Sahasrabuddhe NA, Balakrishnan L, Syed N, Sekhar NR, Katte TV, Pinto SM, Srikanth SM, Kumar P, Pawar H, Kashyap MK, Maharudraiah J, Ashktorab H, Smoot DT, Ramaswamy G, Kumar RV, Cheng Y, Meltzer SJ, Roa JC, Chaerkady R, Prasad TS, Harsha HC, Chatterjee A, Pandey A.

Proteomics Clin Appl. 2013 Jun;7(5-6):355-66. doi: 10.1002/prca.201200069. Epub 2013 May 21.

42.

Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs).

Kim MS, Kuppireddy SV, Sakamuri S, Singal M, Getnet D, Harsha HC, Goel R, Balakrishnan L, Jacob HK, Kashyap MK, Tankala SG, Maitra A, Iacobuzio-Donahue CA, Jaffee E, Goggins MG, Velculescu VE, Hruban RH, Pandey A.

J Proteome Res. 2012 Nov 2;11(11):5556-63. doi: 10.1021/pr300483r. Epub 2012 Oct 11.

43.

Msh2-Msh3 interferes with Okazaki fragment processing to promote trinucleotide repeat expansions.

Kantartzis A, Williams GM, Balakrishnan L, Roberts RL, Surtees JA, Bambara RA.

Cell Rep. 2012 Aug 30;2(2):216-22. doi: 10.1016/j.celrep.2012.06.020. Epub 2012 Aug 2.

44.

Biochemical analyses indicate that binding and cleavage specificities define the ordered processing of human Okazaki fragments by Dna2 and FEN1.

Gloor JW, Balakrishnan L, Campbell JL, Bambara RA.

Nucleic Acids Res. 2012 Aug;40(14):6774-86. doi: 10.1093/nar/gks388. Epub 2012 May 7.

45.

Virion-mediated transfer of SV40 epigenetic information.

Milavetz B, Kallestad L, Gefroh A, Adams N, Woods E, Balakrishnan L.

Epigenetics. 2012 Jun 1;7(6):528-34. doi: 10.4161/epi.20057. Epub 2012 Jun 1.

46.

Telomere proteins POT1, TRF1 and TRF2 augment long-patch base excision repair in vitro.

Miller AS, Balakrishnan L, Buncher NA, Opresko PL, Bambara RA.

Cell Cycle. 2012 Mar 1;11(5):998-1007. doi: 10.4161/cc.11.5.19483. Epub 2012 Mar 1.

47.

A Signaling Network of Thyroid-Stimulating Hormone.

Goel R, Raju R, Maharudraiah J, Sameer Kumar GS, Ghosh K, Kumar A, Lakshmi TP, Sharma J, Sharma R, Balakrishnan L, Pan A, Kandasamy K, Christopher R, Krishna V, Mohan SS, Harsha HC, Mathur PP, Pandey A, Keshava Prasad TS.

J Proteomics Bioinform. 2011 Oct 29;4. doi: 10.4172/jpb.1000195.

48.

Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.

Kelkar DS, Kumar D, Kumar P, Balakrishnan L, Muthusamy B, Yadav AK, Shrivastava P, Marimuthu A, Anand S, Sundaram H, Kingsbury R, Harsha HC, Nair B, Prasad TS, Chauhan DS, Katoch K, Katoch VM, Kumar P, Chaerkady R, Ramachandran S, Dash D, Pandey A.

Mol Cell Proteomics. 2011 Dec;10(12):M111.011627. doi: 10.1074/mcp.M111.011445. Epub 2011 Oct 3.

49.

NetSlim: high-confidence curated signaling maps.

Raju R, Nanjappa V, Balakrishnan L, Radhakrishnan A, Thomas JK, Sharma J, Tian M, Palapetta SM, Subbannayya T, Sekhar NR, Muthusamy B, Goel R, Subbannayya Y, Telikicherla D, Bhattacharjee M, Pinto SM, Syed N, Srikanth MS, Sathe GJ, Ahmad S, Chavan SN, Kumar GS, Marimuthu A, Prasad TS, Harsha HC, Rahiman BA, Ohara O, Bader GD, Sujatha Mohan S, Schiemann WP, Pandey A.

Database (Oxford). 2011 Sep 29;2011:bar032. doi: 10.1093/database/bar032. Print 2011.

50.

The changing view of Dna2.

Balakrishnan L, Bambara RA.

Cell Cycle. 2011 Aug 15;10(16):2620-1. Epub 2011 Aug 15. No abstract available.

PMID:
21829100

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