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Items: 1 to 50 of 181

1.

Analysis of Coronavirus Temperature-Sensitive Mutants Reveals an Interplay between the Macrodomain and Papain-Like Protease Impacting Replication and Pathogenesis.

Deng X, Mettelman RC, O'Brien A, Thompson JA, O'Brien TE, Baker SC.

J Virol. 2019 May 29;93(12). pii: e02140-18. doi: 10.1128/JVI.02140-18. Print 2019 Jun 15.

PMID:
30918076
2.

A distinct inferential mechanism for delusions in schizophrenia.

Baker SC, Konova AB, Daw ND, Horga G.

Brain. 2019 Jun 1;142(6):1797-1812. doi: 10.1093/brain/awz051.

PMID:
30895299
3.

Investigating the Association Between Internet Health Information Use and Patient Willingness to Communicate with Health Care Providers.

Baker SC, Watson BM.

Health Commun. 2019 Mar 18:1-10. doi: 10.1080/10410236.2019.1584778. [Epub ahead of print]

PMID:
30880472
4.

Neuromelanin-sensitive MRI as a noninvasive proxy measure of dopamine function in the human brain.

Cassidy CM, Zucca FA, Girgis RR, Baker SC, Weinstein JJ, Sharp ME, Bellei C, Valmadre A, Vanegas N, Kegeles LS, Brucato G, Jung Kang U, Sulzer D, Zecca L, Abi-Dargham A, Horga G.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5108-5117. doi: 10.1073/pnas.1807983116. Epub 2019 Feb 22.

PMID:
30796187
5.

Coronavirus Endoribonuclease Activity in Porcine Epidemic Diarrhea Virus Suppresses Type I and Type III Interferon Responses.

Deng X, van Geelen A, Buckley AC, O'Brien A, Pillatzki A, Lager KM, Faaberg KS, Baker SC.

J Virol. 2019 Apr 3;93(8). pii: e02000-18. doi: 10.1128/JVI.02000-18. Print 2019 Apr 15.

PMID:
30728254
6.

The papain-like protease determines a virulence trait that varies among members of the SARS-coronavirus species.

Niemeyer D, Mösbauer K, Klein EM, Sieberg A, Mettelman RC, Mielech AM, Dijkman R, Baker SC, Drosten C, Müller MA.

PLoS Pathog. 2018 Sep 24;14(9):e1007296. doi: 10.1371/journal.ppat.1007296. eCollection 2018 Sep.

7.

Characterizing replication kinetics and plaque production of type I feline infectious peritonitis virus in three feline cell lines.

O'Brien A, Mettelman RC, Volk A, André NM, Whittaker GR, Baker SC.

Virology. 2018 Dec;525:1-9. doi: 10.1016/j.virol.2018.08.022. Epub 2018 Sep 8.

PMID:
30205273
8.

Failsafes.

Baker SC.

Nature. 2018 Sep;561(7721):144. doi: 10.1038/d41586-018-06089-7. No abstract available.

PMID:
30185970
9.

Differential transcription factor expression by human epithelial cells of buccal and urothelial derivation.

Hustler A, Eardley I, Hinley J, Pearson J, Wezel F, Radvanyi F, Baker SC, Southgate J.

Exp Cell Res. 2018 Aug 15;369(2):284-294. doi: 10.1016/j.yexcr.2018.05.031. Epub 2018 May 26.

10.

Corrigendum: Assessing National Biodiversity Trends for Rocky and Coral Reefs through the Integration of Citizen Science and Scientific Monitoring Programs.

Stuart-Smith RD, Edgar GJ, Barrett NS, Bates AE, Baker SC, Bax NJ, Becerro MA, Berkhout J, Blanchard JL, Brock DJ, Clark GF, Cooper AT, Davis TR, Day PB, Duffy JE, Holmes TH, Howe SA, Jordan A, Kininmonth S, Knott NA, Lefcheck JS, Ling SD, Parr A, Strain E, Sweatman H, Thomson R.

Bioscience. 2017 Aug 1;67(8):774. doi: 10.1093/biosci/bix070. Epub 2017 Jul 13.

11.

Differentiation-associated urothelial cytochrome P450 oxidoreductase predicates the xenobiotic-metabolizing activity of "luminal" muscle-invasive bladder cancers.

Baker SC, Arlt VM, Indra R, Joel M, Stiborová M, Eardley I, Ahmad N, Otto W, Burger M, Rubenwolf P, Phillips DH, Southgate J.

Mol Carcinog. 2018 May;57(5):606-618. doi: 10.1002/mc.22784. Epub 2018 Feb 1.

12.

Publisher Correction: Genome-wide linkage and association study implicates the 10q26 region as a major genetic contributor to primary nonsyndromic vesicoureteric reflux.

Darlow JM, Darlay R, Dobson MG, Stewart A, Charoen P, Southgate J, Baker SC, Xu Y, Hunziker M, Lambert HJ, Green AJ, Santibanez-Koref M, Sayer JA, Goodship THJ, Puri P, Woolf AS, Kenda RB, Barton DE, Cordell HJ.

Sci Rep. 2018 Jan 8;8(1):459. doi: 10.1038/s41598-017-17992-w.

13.

An "Old" protein with a new story: Coronavirus endoribonuclease is important for evading host antiviral defenses.

Deng X, Baker SC.

Virology. 2018 Apr;517:157-163. doi: 10.1016/j.virol.2017.12.024. Epub 2018 Jan 4. Review.

14.

Genome-wide linkage and association study implicates the 10q26 region as a major genetic contributor to primary nonsyndromic vesicoureteric reflux.

Darlow JM, Darlay R, Dobson MG, Stewart A, Charoen P, Southgate J, Baker SC, Xu Y, Hunziker M, Lambert HJ, Green AJ, Santibanez-Koref M, Sayer JA, Goodship THJ, Puri P, Woolf AS, Kenda RB, Barton DE, Cordell HJ.

Sci Rep. 2017 Nov 6;7(1):14595. doi: 10.1038/s41598-017-15062-9. Erratum in: Sci Rep. 2018 Jan 8;8(1):459.

15.

Emerging Concepts in TCR Specificity: Rationalizing and (Maybe) Predicting Outcomes.

Singh NK, Riley TP, Baker SCB, Borrman T, Weng Z, Baker BM.

J Immunol. 2017 Oct 1;199(7):2203-2213. doi: 10.4049/jimmunol.1700744. Review.

16.

Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.

Blagodatskikh KA, Kramarov VM, Barsova EV, Garkovenko AV, Shcherbo DS, Shelenkov AA, Ustinova VV, Tokarenko MR, Baker SC, Kramarova TV, Ignatov KB.

PLoS One. 2017 Sep 11;12(9):e0184507. doi: 10.1371/journal.pone.0184507. eCollection 2017.

17.

Assessing National Biodiversity Trends for Rocky and Coral Reefs through the Integration of Citizen Science and Scientific Monitoring Programs.

Stuart-Smith RD, Edgar GJ, Barrett NS, Bates AE, Baker SC, Bax NJ, Becerro MA, Berkhout J, Blanchard JL, Brock DJ, Clark GF, Cooper AT, Davis TR, Day PB, Duffy JE, Holmes TH, Howe SA, Jordan A, Kininmonth S, Knott NA, Lefcheck JS, Ling SD, Parr A, Strain E, Sweatman H, Thomson R.

Bioscience. 2017 Feb 1;67(2):134-146. doi: 10.1093/biosci/biw180. Erratum in: Bioscience. 2017 Aug 1;67(8):774.

18.

Allograft Inflammatory Factor-1 Links T-Cell Activation, Interferon Response, and Macrophage Activation in Chronic Kawasaki Disease Arteritis.

Rowley AH, Baker SC, Kim KA, Shulman ST, Yang A, Arrollo D, DeBerge M, Han S, Sibinga NES, Pink AJ, Thorp EB.

J Pediatric Infect Dis Soc. 2017 Sep 1;6(3):e94-e102. doi: 10.1093/jpids/pix025.

19.

Coronavirus nonstructural protein 15 mediates evasion of dsRNA sensors and limits apoptosis in macrophages.

Deng X, Hackbart M, Mettelman RC, O'Brien A, Mielech AM, Yi G, Kao CC, Baker SC.

Proc Natl Acad Sci U S A. 2017 May 23;114(21):E4251-E4260. doi: 10.1073/pnas.1618310114. Epub 2017 May 8.

20.

Systematic Review of Interventions to Reduce Psychiatric Morbidity in Parents and Children After PICU Admissions.

Baker SC, Gledhill JA.

Pediatr Crit Care Med. 2017 Apr;18(4):343-348. doi: 10.1097/PCC.0000000000001096. Review.

PMID:
28207571
21.

X-ray Structure and Enzymatic Activity Profile of a Core Papain-like Protease of MERS Coronavirus with utility for structure-based drug design.

Clasman JR, Báez-Santos YM, Mettelman RC, O'Brien A, Baker SC, Mesecar AD.

Sci Rep. 2017 Jan 12;7:40292. doi: 10.1038/srep40292.

22.

A cross-continental comparison of plant and beetle responses to retention of forest patches during timber harvest.

Baker SC, Halpern CB, Wardlaw TJ, Kern C, Edgar GJ, Thomson RJ, Bigley RE, Franklin JF, Gandhi KJ, Gustafsson L, Johnson S, Palik BJ, Spies TA, Steel EA, Weslien J, Strengbom J.

Ecol Appl. 2016 Dec;26(8):2493-2504. doi: 10.1002/eap.1406. Epub 2016 Oct 27.

PMID:
27787926
23.

Ketamine-Induced Apoptosis in Normal Human Urothelial Cells: A Direct, N-Methyl-d-Aspartate Receptor-Independent Pathway Characterized by Mitochondrial Stress.

Baker SC, Shabir S, Georgopoulos NT, Southgate J.

Am J Pathol. 2016 May;186(5):1267-77. doi: 10.1016/j.ajpath.2015.12.014. Epub 2016 Mar 18.

24.

A Rare Urachal Cyst in a Case of Ketamine-induced Cystitis Provides Mechanistic Insights.

Kidger E, Stahlschmidt J, Garthwaite M, Fulford S, Southgate J, Baker SC.

Urology. 2016 Apr;90:223.e1-7. doi: 10.1016/j.urology.2015.12.015. Epub 2015 Dec 29.

PMID:
26743387
25.

The transcriptional profile of coronary arteritis in Kawasaki disease.

Rowley AH, Wylie KM, Kim KY, Pink AJ, Yang A, Reindel R, Baker SC, Shulman ST, Orenstein JM, Lingen MW, Weinstock GM, Wylie TN.

BMC Genomics. 2015 Dec 18;16:1076. doi: 10.1186/s12864-015-2323-5.

26.

X-ray Structural and Functional Studies of the Three Tandemly Linked Domains of Non-structural Protein 3 (nsp3) from Murine Hepatitis Virus Reveal Conserved Functions.

Chen Y, Savinov SN, Mielech AM, Cao T, Baker SC, Mesecar AD.

J Biol Chem. 2015 Oct 16;290(42):25293-306. doi: 10.1074/jbc.M115.662130. Epub 2015 Aug 19.

27.

Living near the edge: Being close to mature forest increases the rate of succession in beetle communities.

Fountain-Jones NM, Jordan GJ, Baker TP, Balmer JM, Wardlaw T, Baker SC.

Ecol Appl. 2015 Apr;25(3):800-11.

PMID:
26214924
28.

Use of Centers for Disease Control and Prevention Gravid Trap in Catch Basins: Proof-Of-Concept Trials.

Miller N, Mettelman RC, Baker SC, Harbison JE.

J Am Mosq Control Assoc. 2015 Jun;31(2):196-9. doi: 10.2987/14-6470R.

PMID:
26181700
29.

Citizens unite for computational immunology!

Belden OS, Baker SC, Baker BM.

Trends Immunol. 2015 Jul;36(7):385-7. doi: 10.1016/j.it.2015.05.004.

30.

Murine coronavirus ubiquitin-like domain is important for papain-like protease stability and viral pathogenesis.

Mielech AM, Deng X, Chen Y, Kindler E, Wheeler DL, Mesecar AD, Thiel V, Perlman S, Baker SC.

J Virol. 2015 May;89(9):4907-17. doi: 10.1128/JVI.00338-15. Epub 2015 Feb 18.

31.

Measurement reliability and effect direction for self-efficacy and pain in colorectal cancer patients.

Baker SC, Glenn LL.

Eur J Oncol Nurs. 2015 Feb;19(1):97. doi: 10.1016/j.ejon.2014.12.006. Epub 2015 Jan 19. No abstract available.

PMID:
25613371
32.

Can retention forestry help conserve biodiversity? A meta-analysis.

Fedrowitz K, Koricheva J, Baker SC, Lindenmayer DB, Palik B, Rosenvald R, Beese W, Franklin JF, Kouki J, Macdonald E, Messier C, Sverdrup-Thygeson A, Gustafsson L.

J Appl Ecol. 2014 Dec;51(6):1669-1679. Epub 2014 Jun 17.

33.

A chimeric virus-mouse model system for evaluating the function and inhibition of papain-like proteases of emerging coronaviruses.

Deng X, Agnihothram S, Mielech AM, Nichols DB, Wilson MW, StJohn SE, Larsen SD, Mesecar AD, Lenschow DJ, Baric RS, Baker SC.

J Virol. 2014 Oct;88(20):11825-33. doi: 10.1128/JVI.01749-14. Epub 2014 Aug 6.

34.

Coronaviruses resistant to a 3C-like protease inhibitor are attenuated for replication and pathogenesis, revealing a low genetic barrier but high fitness cost of resistance.

Deng X, StJohn SE, Osswald HL, O'Brien A, Banach BS, Sleeman K, Ghosh AK, Mesecar AD, Baker SC.

J Virol. 2014 Oct;88(20):11886-98. doi: 10.1128/JVI.01528-14. Epub 2014 Aug 6.

35.

A study of cardiovascular miRNA biomarkers for Kawasaki disease.

Rowley AH, Pink AJ, Reindel R, Innocentini N, Baker SC, Shulman ST, Kim KY.

Pediatr Infect Dis J. 2014 Dec;33(12):1296-9. doi: 10.1097/INF.0000000000000449.

36.

Structural Basis for the Ubiquitin-Linkage Specificity and deISGylating activity of SARS-CoV papain-like protease.

Ratia K, Kilianski A, Baez-Santos YM, Baker SC, Mesecar A.

PLoS Pathog. 2014 May 22;10(5):e1004113. doi: 10.1371/journal.ppat.1004113. eCollection 2014 May.

37.

Biomimetic urothelial tissue models for the in vitro evaluation of barrier physiology and bladder drug efficacy.

Baker SC, Shabir S, Southgate J.

Mol Pharm. 2014 Jul 7;11(7):1964-70. doi: 10.1021/mp500065m. Epub 2014 Apr 17. Review.

PMID:
24697150
38.

Competitive fitness in coronaviruses is not correlated with size or number of double-membrane vesicles under reduced-temperature growth conditions.

Al-Mulla HM, Turrell L, Smith NM, Payne L, Baliji S, Züst R, Thiel V, Baker SC, Siddell SG, Neuman BW.

MBio. 2014 Apr 1;5(2):e01107-13. doi: 10.1128/mBio.01107-13.

39.

Can human mannequin-based simulation provide a feasible and clinically acceptable method for training tracheostomy management skills for speech-language pathologists?

Ward EC, Baker SC, Wall LR, Duggan BL, Hancock KL, Bassett LV, Hyde TJ.

Am J Speech Lang Pathol. 2014 Aug;23(3):421-36. doi: 10.1044/2014_AJSLP-13-0050.

PMID:
24686737
40.

CD84 is markedly up-regulated in Kawasaki disease arteriopathy.

Reindel R, Bischof J, Kim KY, Orenstein JM, Soares MB, Baker SC, Shulman ST, Perlman EJ, Lingen MW, Pink AJ, Trevenen C, Rowley AH.

Clin Exp Immunol. 2014 Jul;177(1):203-11. doi: 10.1111/cei.12327.

41.

X-ray structural and biological evaluation of a series of potent and highly selective inhibitors of human coronavirus papain-like proteases.

Báez-Santos YM, Barraza SJ, Wilson MW, Agius MP, Mielech AM, Davis NM, Baker SC, Larsen SD, Mesecar AD.

J Med Chem. 2014 Mar 27;57(6):2393-412. doi: 10.1021/jm401712t. Epub 2014 Mar 14.

42.

The human tissue-biomaterial interface: a role for PPARγ-dependent glucocorticoid receptor activation in regulating the CD163+ M2 macrophage phenotype.

Bullers SJ, Baker SC, Ingham E, Southgate J.

Tissue Eng Part A. 2014 Sep;20(17-18):2390-401. doi: 10.1089/ten.TEA.2013.0628. Epub 2014 May 20.

43.

Nidovirus papain-like proteases: multifunctional enzymes with protease, deubiquitinating and deISGylating activities.

Mielech AM, Chen Y, Mesecar AD, Baker SC.

Virus Res. 2014 Dec 19;194:184-90. doi: 10.1016/j.virusres.2014.01.025. Epub 2014 Feb 7. Review.

44.

MERS-CoV papain-like protease has deISGylating and deubiquitinating activities.

Mielech AM, Kilianski A, Baez-Santos YM, Mesecar AD, Baker SC.

Virology. 2014 Feb;450-451:64-70. doi: 10.1016/j.virol.2013.11.040. Epub 2013 Dec 22.

45.

Global conservation outcomes depend on marine protected areas with five key features.

Edgar GJ, Stuart-Smith RD, Willis TJ, Kininmonth S, Baker SC, Banks S, Barrett NS, Becerro MA, Bernard AT, Berkhout J, Buxton CD, Campbell SJ, Cooper AT, Davey M, Edgar SC, Försterra G, Galván DE, Irigoyen AJ, Kushner DJ, Moura R, Parnell PE, Shears NT, Soler G, Strain EM, Thomson RJ.

Nature. 2014 Feb 13;506(7487):216-20. doi: 10.1038/nature13022. Epub 2014 Feb 5.

PMID:
24499817
46.

Periostin is upregulated in coronary arteriopathy in Kawasaki disease and is a potential diagnostic biomarker.

Reindel R, Kim KY, Baker SC, Shulman ST, Perlman EJ, Lingen MW, Trevenen C, Rowley AH.

Pediatr Infect Dis J. 2014 Jun;33(6):659-61. doi: 10.1097/INF.0000000000000233.

47.

Cell-based antiviral screening against coronaviruses: developing virus-specific and broad-spectrum inhibitors.

Kilianski A, Baker SC.

Antiviral Res. 2014 Jan;101:105-12. doi: 10.1016/j.antiviral.2013.11.004. Epub 2013 Nov 20. Review.

48.

Nerve hyperplasia: a unique feature of ketamine cystitis.

Baker SC, Stahlschmidt J, Oxley J, Hinley J, Eardley I, Marsh F, Gillatt D, Fulford S, Southgate J.

Acta Neuropathol Commun. 2013 Oct 8;1:64. doi: 10.1186/2051-5960-1-64.

49.

Integrating abundance and functional traits reveals new global hotspots of fish diversity.

Stuart-Smith RD, Bates AE, Lefcheck JS, Duffy JE, Baker SC, Thomson RJ, Stuart-Smith JF, Hill NA, Kininmonth SJ, Airoldi L, Becerro MA, Campbell SJ, Dawson TP, Navarrete SA, Soler GA, Strain EM, Willis TJ, Edgar GJ.

Nature. 2013 Sep 26;501(7468):539-42. doi: 10.1038/nature12529.

PMID:
24067714
50.

Assessing activity and inhibition of Middle East respiratory syndrome coronavirus papain-like and 3C-like proteases using luciferase-based biosensors.

Kilianski A, Mielech AM, Deng X, Baker SC.

J Virol. 2013 Nov;87(21):11955-62. doi: 10.1128/JVI.02105-13. Epub 2013 Aug 28.

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