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Skeletal muscle amino acid uptake is lower and alanine production is greater in late gestation intrauterine growth restricted fetal sheep hindlimb.

Chang EI, Wesolowski SR, Gilje EA, Baker PR 2nd, Reisz JA, D'Alessandro A, Hay WW Jr, Rozance PJ, Brown LD.

Am J Physiol Regul Integr Comp Physiol. 2019 Sep 4. doi: 10.1152/ajpregu.00115.2019. [Epub ahead of print]


Lysosomal Storage and Albinism Due to Effects of a De Novo CLCN7 Variant on Lysosomal Acidification.

Nicoli ER, Weston MR, Hackbarth M, Becerril A, Larson A, Zein WM, Baker PR 2nd, Burke JD, Dorward H, Davids M, Huang Y, Adams DR, Zerfas PM, Chen D, Markello TC, Toro C, Wood T, Elliott G, Vu M; Undiagnosed Diseases Network, Zheng W, Garrett LJ, Tifft CJ, Gahl WA, Day-Salvatore DL, Mindell JA, Malicdan MCV.

Am J Hum Genet. 2019 Jun 6;104(6):1127-1138. doi: 10.1016/j.ajhg.2019.04.008. Epub 2019 May 30.


Proteomics Standards Initiative Extended FASTA Format.

Binz PA, Shofstahl J, Vizcaíno JA, Barsnes H, Chalkley RJ, Menschaert G, Alpi E, Clauser K, Eng JK, Lane L, Seymour SL, Sánchez LFH, Mayer G, Eisenacher M, Perez-Riverol Y, Kapp EA, Mendoza L, Baker PR, Collins A, Van Den Bossche T, Deutsch EW.

J Proteome Res. 2019 Jun 7;18(6):2686-2692. doi: 10.1021/acs.jproteome.9b00064. Epub 2019 May 23.


Future of Public Health Training: What Are the Challenges? What Might the Solutions Look Like?

Baker PRA, Dingle K, Dunne MP.

Asia Pac J Public Health. 2018 Nov 16:1010539518810555. doi: 10.1177/1010539518810555. [Epub ahead of print]


Untargeted lipidomic analysis to broadly characterize the effects of pathogenic and non-pathogenic staphylococci on mammalian lipids.

Gajenthra Kumar N, Contaifer D Jr, Baker PRS, Ekroos K, Jefferson KK, Wijesinghe DS.

PLoS One. 2018 Oct 31;13(10):e0206606. doi: 10.1371/journal.pone.0206606. eCollection 2018.


Which eHealth interventions are most effective for smoking cessation? A systematic review.

Do HP, Tran BX, Le Pham Q, Nguyen LH, Tran TT, Latkin CA, Dunne MP, Baker PR.

Patient Prefer Adherence. 2018 Oct 8;12:2065-2084. doi: 10.2147/PPA.S169397. eCollection 2018. Review.


Switching obese mothers to a healthy diet improves fetal hypoxemia, hepatic metabolites, and lipotoxicity in non-human primates.

Wesolowski SR, Mulligan CM, Janssen RC, Baker PR 2nd, Bergman BC, D'Alessandro A, Nemkov T, Maclean KN, Jiang H, Dean TA, Takahashi DL, Kievit P, McCurdy CE, Aagaard KM, Friedman JE.

Mol Metab. 2018 Dec;18:25-41. doi: 10.1016/j.molmet.2018.09.008. Epub 2018 Sep 28.


Technology in Public Health Higher Education.

Baker PRA, Demant D, Cathcart A.

Asia Pac J Public Health. 2018 Oct;30(7):655-665. doi: 10.1177/1010539518800337. Epub 2018 Oct 5.


Preconception Micronutrient Supplementation Reduced Circulating Branched Chain Amino Acids at 12 Weeks Gestation in an Open Trial of Guatemalan Women Who Are Overweight or Obese.

Borengasser SJ, Baker PR 2nd, Kerns ME, Miller LV, Palacios AP, Kemp JF, Westcott JE, Morrison SD, Hernandez TL, Garces A, Figueroa L, Friedman JE, Hambidge KM, Krebs NF.

Nutrients. 2018 Sep 11;10(9). pii: E1282. doi: 10.3390/nu10091282.


Mitochondrial role in the neonatal predisposition to developing nonalcoholic fatty liver disease.

Baker PR 2nd, Friedman JE.

J Clin Invest. 2018 Aug 31;128(9):3692-3703. doi: 10.1172/JCI120846. Epub 2018 Aug 31. Review.


TRAPPC11 and GOSR2 mutations associate with hypoglycosylation of α-dystroglycan and muscular dystrophy.

Larson AA, Baker PR 2nd, Milev MP, Press CA, Sokol RJ, Cox MO, Lekostaj JK, Stence AA, Bossler AD, Mueller JM, Prematilake K, Tadjo TF, Williams CA, Sacher M, Moore SA.

Skelet Muscle. 2018 May 31;8(1):17. doi: 10.1186/s13395-018-0163-0.


In memoriam.

Van Hove JLK, Thomas JA, Baker PR 2nd, Larson AA.

J Inherit Metab Dis. 2018 May 7. doi: 10.1007/s10545-018-0191-2. [Epub ahead of print] No abstract available.


Quantitative structural multiclass lipidomics using differential mobility: electron impact excitation of ions from organics (EIEIO) mass spectrometry.

Baba T, Campbell JL, Le Blanc JCY, Baker PRS, Ikeda K.

J Lipid Res. 2018 May;59(5):910-919. doi: 10.1194/jlr.D083261. Epub 2018 Mar 14.


Altered gene expression and metabolism in fetal umbilical cord mesenchymal stem cells correspond with differences in 5-month-old infant adiposity gain.

Baker PR 2nd, Patinkin ZW, Shapiro ALB, de la Houssaye BA, Janssen RC, Vanderlinden LA, Dabelea D, Friedman JE.

Sci Rep. 2017 Dec 22;7(1):18095. doi: 10.1038/s41598-017-17588-4.


Maternal obesity and increased neonatal adiposity correspond with altered infant mesenchymal stem cell metabolism.

Baker PR 2nd, Patinkin Z, Shapiro AL, De La Houssaye BA, Woontner M, Boyle KE, Vanderlinden L, Dabelea D, Friedman JE.

JCI Insight. 2017 Nov 2;2(21). pii: 94200. doi: 10.1172/jci.insight.94200.


Development of a Branched Radio-Frequency Ion Trap for Electron Based Dissociation and Related Applications.

Baba T, Campbell JL, Le Blanc JCY, Baker PRS, Hager JW, Thomson BA.

Mass Spectrom (Tokyo). 2017;6(1):A0058. doi: 10.5702/massspectrometry.A0058. Epub 2017 Jun 15.


Distinguishing Cis and Trans Isomers in Intact Complex Lipids Using Electron Impact Excitation of Ions from Organics Mass Spectrometry.

Baba T, Campbell JL, Le Blanc JCY, Baker PRS.

Anal Chem. 2017 Jul 18;89(14):7307-7315. doi: 10.1021/acs.analchem.6b04734. Epub 2017 Jun 28.


A Mock Randomized Controlled Trial With Audience Response Technology for Teaching and Learning Epidemiology.

Baker PRA, Francis DP, Cathcart A.

Asia Pac J Public Health. 2017 Apr;29(3):229-240. doi: 10.1177/1010539517700473.


Structural identification of triacylglycerol isomers using electron impact excitation of ions from organics (EIEIO).

Baba T, Campbell JL, Le Blanc JC, Baker PR.

J Lipid Res. 2016 Nov;57(11):2015-2027. Epub 2016 Jul 25.


Interventions for preventing elder abuse: applying findings of a new Cochrane review.

Baker PR, Francis DP, Mohd Hairi NN, Othman S, Choo WY.

Age Ageing. 2017 May 1;46(3):346-348. doi: 10.1093/ageing/afw186.


Use of a glycosylation site database to improve glycopeptide identification from complex mixtures.

Chalkley RJ, Baker PR.

Anal Bioanal Chem. 2017 Jan;409(2):571-577. doi: 10.1007/s00216-016-9981-2. Epub 2016 Oct 8.


Interventions for preventing abuse in the elderly.

Baker PR, Francis DP, Hairi NN, Othman S, Choo WY.

Cochrane Database Syst Rev. 2016 Aug 16;(8):CD010321. doi: 10.1002/14651858.CD010321.pub2. Review.


Rapid resolution of infantile lipemia retinalis following exchange transfusion.

Capitena CE, Wagoner HJ, Ruzas CM, Bennett TD, Baker PR 2nd, Jung JL, Weisfeld-Adams JD.

J Inherit Metab Dis. 2016 Nov;39(6):889-890. Epub 2016 Aug 12. No abstract available.


Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals.

Shah AK, Lê Cao KA, Choi E, Chen D, Gautier B, Nancarrow D, Whiteman DC, Baker PR, Clauser KR, Chalkley RJ, Saunders NA, Barbour AP, Joshi V, Hill MM.

Data Brief. 2016 Apr 1;7:1058-62. doi: 10.1016/j.dib.2016.03.081. eCollection 2016 Jun.


Alterations in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome.

Lemas DJ, Young BE, Baker PR 2nd, Tomczik AC, Soderborg TK, Hernandez TL, de la Houssaye BA, Robertson CE, Rudolph MC, Ir D, Patinkin ZW, Krebs NF, Santorico SA, Weir T, Barbour LA, Frank DN, Friedman JE.

Am J Clin Nutr. 2016 May;103(5):1291-300. doi: 10.3945/ajcn.115.126375.


In-depth sphingomyelin characterization using electron impact excitation of ions from organics and mass spectrometry.

Baba T, Campbell JL, Le Blanc JC, Baker PR.

J Lipid Res. 2016 May;57(5):858-67. doi: 10.1194/jlr.M067199. Epub 2016 Mar 22.


Lipid Profiling of In Vitro Cell Models of Adipogenic Differentiation: Relationships With Mouse Adipose Tissues.

Liaw L, Prudovsky I, Koza RA, Anunciado-Koza RV, Siviski ME, Lindner V, Friesel RE, Rosen CJ, Baker PR, Simons B, Vary CP.

J Cell Biochem. 2016 Sep;117(9):2182-93. doi: 10.1002/jcb.25522. Epub 2016 Mar 16.


Family-Based Interventions in Preventing Children and Adolescents from Using Tobacco: A Systematic Review and Meta-Analysis.

Thomas RE, Baker PRA, Thomas BC.

Acad Pediatr. 2016 Jul;16(5):419-429. doi: 10.1016/j.acap.2015.12.006. Epub 2016 Feb 15. Review.


Cochrane review: Whole-body cryotherapy (extreme cold air exposure) for preventing and treating muscle soreness after exercise in adults.

Costello JT, Baker PR, Minett GM, Bieuzen F, Stewart IB, Bleakley C.

J Evid Based Med. 2016 Feb;9(1):43-44. doi: 10.1111/jebm.12187. Epub 2016 Jan 14.


Mesenchymal Stem Cells From Infants Born to Obese Mothers Exhibit Greater Potential for Adipogenesis: The Healthy Start BabyBUMP Project.

Boyle KE, Patinkin ZW, Shapiro AL, Baker PR 2nd, Dabelea D, Friedman JE.

Diabetes. 2016 Mar;65(3):647-59. doi: 10.2337/db15-0849. Epub 2015 Dec 2.


Whole-body cryotherapy (extreme cold air exposure) for preventing and treating muscle soreness after exercise in adults.

Costello JT, Baker PR, Minett GM, Bieuzen F, Stewart IB, Bleakley C.

Cochrane Database Syst Rev. 2015 Sep 18;(9):CD010789. doi: 10.1002/14651858.CD010789.pub2. Review.


An interactive method for engaging the public health workforce with evidence.

Baker PR, Francis DP, Demant D, Doyle J, Dobbins M.

J Public Health (Oxf). 2015 Sep;37(3):557-60. doi: 10.1093/pubmed/fdv108. Epub 2015 Aug 19. No abstract available.


Metabolomic analysis reveals altered skeletal muscle amino acid and fatty acid handling in obese humans.

Baker PR 2nd, Boyle KE, Koves TR, Ilkayeva OR, Muoio DM, Houmard JA, Friedman JE.

Obesity (Silver Spring). 2015 May;23(5):981-988. doi: 10.1002/oby.21046. Epub 2015 Apr 10.


Family-based programmes for preventing smoking by children and adolescents.

Thomas RE, Baker PR, Thomas BC, Lorenzetti DL.

Cochrane Database Syst Rev. 2015 Feb 27;(2):CD004493. doi: 10.1002/14651858.CD004493.pub3. Review.


Community wide interventions for increasing physical activity.

Baker PR, Francis DP, Soares J, Weightman AL, Foster C.

Cochrane Database Syst Rev. 2015 Jan 5;1:CD008366. doi: 10.1002/14651858.CD008366.pub3. Review.


Co-occurrence of the Poland sequence in a patient with the cobalamin C defect: more than just a coincidence?

Weisfeld-Adams JD, Baker PR.

J Inherit Metab Dis. 2015 Mar;38(2):365-6. doi: 10.1007/s10545-014-9791-7. Epub 2014 Nov 12. No abstract available.


Three-dimensional enhanced lipidomics analysis combining UPLC, differential ion mobility spectrometry, and mass spectrometric separation strategies.

Baker PR, Armando AM, Campbell JL, Quehenberger O, Dennis EA.

J Lipid Res. 2014 Nov;55(11):2432-42. doi: 10.1194/jlr.D051581. Epub 2014 Sep 15.


Differential mobility spectrometry-driven shotgun lipidomics.

Lintonen TP, Baker PR, Suoniemi M, Ubhi BK, Koistinen KM, Duchoslav E, Campbell JL, Ekroos K.

Anal Chem. 2014 Oct 7;86(19):9662-9. doi: 10.1021/ac5021744. Epub 2014 Sep 8.


The benefits and challenges of conducting an overview of systematic reviews in public health: a focus on physical activity.

Baker PR, Costello JT, Dobbins M, Waters EB.

J Public Health (Oxf). 2014 Sep;36(3):517-21. doi: 10.1093/pubmed/fdu050. Epub 2014 Aug 1. No abstract available.


MS-viewer: a web-based spectral viewer for proteomics results.

Baker PR, Chalkley RJ.

Mol Cell Proteomics. 2014 May;13(5):1392-6. doi: 10.1074/mcp.O113.037200. Epub 2014 Mar 3.


Matching cross-linked peptide spectra: only as good as the worse identification.

Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ.

Mol Cell Proteomics. 2014 Feb;13(2):420-34. doi: 10.1074/mcp.M113.034009. Epub 2013 Dec 12.


Variant non ketotic hyperglycinemia is caused by mutations in LIAS, BOLA3 and the novel gene GLRX5.

Baker PR 2nd, Friederich MW, Swanson MA, Shaikh T, Bhattacharya K, Scharer GH, Aicher J, Creadon-Swindell G, Geiger E, MacLean KN, Lee WT, Deshpande C, Freckmann ML, Shih LY, Wasserstein M, Rasmussen MB, Lund AM, Procopis P, Cameron JM, Robinson BH, Brown GK, Brown RM, Compton AG, Dieckmann CL, Collard R, Coughlin CR 2nd, Spector E, Wempe MF, Van Hove JL.

Brain. 2014 Feb;137(Pt 2):366-79. doi: 10.1093/brain/awt328. Epub 2013 Dec 11.


Characterization and quantification of endogenous fatty acid nitroalkene metabolites in human urine.

Salvatore SR, Vitturi DA, Baker PR, Bonacci G, Koenitzer JR, Woodcock SR, Freeman BA, Schopfer FJ.

J Lipid Res. 2013 Jul;54(7):1998-2009. doi: 10.1194/jlr.M037804. Epub 2013 Apr 25.


Conjugated linoleic acid is a preferential substrate for fatty acid nitration.

Bonacci G, Baker PR, Salvatore SR, Shores D, Khoo NK, Koenitzer JR, Vitturi DA, Woodcock SR, Golin-Bisello F, Cole MP, Watkins S, St Croix C, Batthyany CI, Freeman BA, Schopfer FJ.

J Biol Chem. 2012 Dec 28;287(53):44071-82. doi: 10.1074/jbc.M112.401356. Epub 2012 Nov 9.


Current challenges in software solutions for mass spectrometry-based quantitative proteomics.

Cappadona S, Baker PR, Cutillas PR, Heck AJ, van Breukelen B.

Amino Acids. 2012 Sep;43(3):1087-108. doi: 10.1007/s00726-012-1289-8. Epub 2012 Jul 22. Review.


Predicting the onset of Addison's disease: ACTH, renin, cortisol and 21-hydroxylase autoantibodies.

Baker PR, Nanduri P, Gottlieb PA, Yu L, Klingensmith GJ, Eisenbarth GS, Barker JM.

Clin Endocrinol (Oxf). 2012 May;76(5):617-24. doi: 10.1111/j.1365-2265.2011.04276.x.


New insights into the role of fatty acids in the pathogenesis and resolution of inflammatory bowel disease.

Shores DR, Binion DG, Freeman BA, Baker PR.

Inflamm Bowel Dis. 2011 Oct;17(10):2192-204. doi: 10.1002/ibd.21560. Epub 2010 Dec 3. Review.


Epidemiologic modeling with FluSurge for pandemic (H1N1) 2009 outbreak, Queensland, Australia.

Baker PR, Sun J, Morris J, Dines A.

Emerg Infect Dis. 2011 Sep;17(9):1608-14. doi: 10.3201/eid1709.102012.


The past, present, and future of genetic associations in type 1 diabetes.

Baker PR 2nd, Steck AK.

Curr Diab Rep. 2011 Oct;11(5):445-53. doi: 10.1007/s11892-011-0212-0. Review.


Assessment of applicability and transferability of evidence-based antenatal interventions to the Australian indigenous setting.

Baker PR, Shipp JJ, Wellings SH, Priest N, Francis DP.

Health Promot Int. 2012 Jun;27(2):208-19. doi: 10.1093/heapro/dar032. Epub 2011 Jun 10.


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