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Items: 1 to 50 of 165


A benchmark study of loop modeling methods applied to G protein-coupled receptors.

Wink LH, Baker DL, Cole JA, Parrill AL.

J Comput Aided Mol Des. 2019 Jun;33(6):573-595. doi: 10.1007/s10822-019-00196-x. Epub 2019 May 23.


Abiotic reduction of Cr(VI) by humic acids derived from peat and lignite: kinetics and removal mechanism.

Aldmour ST, Burke IT, Bray AW, Baker DL, Ross AB, Gill FL, Cibin G, Ries ME, Stewart DI.

Environ Sci Pollut Res Int. 2019 Feb;26(5):4717-4729. doi: 10.1007/s11356-018-3902-1. Epub 2018 Dec 18.


GPCR homology model template selection benchmarking: Global versus local similarity measures.

Castleman PN, Sears CK, Cole JA, Baker DL, Parrill AL.

J Mol Graph Model. 2019 Jan;86:235-246. doi: 10.1016/j.jmgm.2018.10.016. Epub 2018 Oct 21.


Reimmunization increases contraceptive effectiveness of gonadotropin-releasing hormone vaccine (GonaCon-Equine) in free-ranging horses (Equus caballus): Limitations and side effects.

Baker DL, Powers JG, Ransom JI, McCann BE, Oehler MW, Bruemmer JE, Galloway NL, Eckery DC, Nett TM.

PLoS One. 2018 Jul 31;13(7):e0201570. doi: 10.1371/journal.pone.0201570. eCollection 2018.


Antibiotic-associated Manipulation of the Gut Microbiota and Phenotypic Restoration in NOD Mice.

Fahey JR, Lyons BL, Olekszak HL, Mourino AJ, Ratiu JJ, Racine JJ, Chapman HD, Serreze DV, Baker DL, Hendrix NK.

Comp Med. 2017 Aug 1;67(4):335-343.


MIBG avidity correlates with clinical features, tumor biology, and outcomes in neuroblastoma: A report from the Children's Oncology Group.

DuBois SG, Mody R, Naranjo A, Van Ryn C, Russ D, Oldridge D, Kreissman S, Baker DL, Parisi M, Shulkin BL, Bai H, Diskin SJ, Batra V, Maris JM, Park JR, Matthay KK, Yanik G.

Pediatr Blood Cancer. 2017 Nov;64(11). doi: 10.1002/pbc.26545. Epub 2017 Apr 6.


Highly Potent Non-Carboxylic Acid Autotaxin Inhibitors Reduce Melanoma Metastasis and Chemotherapeutic Resistance of Breast Cancer Stem Cells.

Banerjee S, Norman DD, Lee SC, Parrill AL, Pham TC, Baker DL, Tigyi GJ, Miller DD.

J Med Chem. 2017 Feb 23;60(4):1309-1324. doi: 10.1021/acs.jmedchem.6b01270. Epub 2017 Feb 10.


G protein-coupled receptors: the evolution of structural insight.

Gacasan SB, Baker DL, Parrill AL.

AIMS Biophys. 2017;4(3):491-527. doi: 10.3934/biophy.2017.3.491. Epub 2017 Aug 21.


Cotinine antagonizes the behavioral effects of nicotine exposure in the planarian Girardia tigrina.

Bach DJ, Tenaglia M, Baker DL, Deats S, Montgomery E, Pagán OR.

Neurosci Lett. 2016 Oct 6;632:204-8. doi: 10.1016/j.neulet.2016.09.005. Epub 2016 Sep 8.


Discovery and synthetic optimization of a novel scaffold for hydrophobic tunnel-targeted autotaxin inhibition.

Ragle LE, Palanisamy DJ, Joe MJ, Stein RS, Norman DD, Tigyi G, Baker DL, Parrill AL.

Bioorg Med Chem. 2016 Oct 1;24(19):4660-4674. doi: 10.1016/j.bmc.2016.08.004. Epub 2016 Aug 4.


Standardised survey method for identifying catchment risks to water quality.

Baker DL, Ferguson CM, Chier P, Warnecke M, Watkinson A.

J Water Health. 2016 Jun;14(3):349-68. doi: 10.2166/wh.2015.054.


Evaluation of IgE Antibodies to Omalizumab (Xolair®) and Their Potential Correlation to Anaphylaxis.

Baker DL, Nakamura GR, Lowman HB, Fischer SK.

AAPS J. 2016 Jan;18(1):115-23. doi: 10.1208/s12248-015-9821-x. Epub 2015 Sep 4.


The Mismatch Between Children's Health Needs and School Resources.

Knauer H, Baker DL, Hebbeler K, Davis-Alldritt L.

J Sch Nurs. 2015 Oct;31(5):326-33. doi: 10.1177/1059840515579083. Epub 2015 Apr 12.


School Health Services for Children With Special Health Care Needs in California.

Baker DL, Hebbeler K, Davis-Alldritt L, Anderson LS, Knauer H.

J Sch Nurs. 2015 Oct;31(5):318-25. doi: 10.1177/1059840515578753. Epub 2015 Apr 8.


Ecological feedbacks can reduce population-level efficacy of wildlife fertility control.

Ransom JI, Powers JG, Thompson Hobbs N, Baker DL.

J Appl Ecol. 2014 Feb;51(1):259-269. Epub 2013 Oct 15. Review.


Response to Becher and Strohner comment regarding Baker DL et al. Evaluation of two commercial omalizumab/free IgE immunoassays: implications of use during therapy. CMRO 2014;30:913-22.

Baker DL, Peng K, Cheu M, Fischer SK.

Curr Med Res Opin. 2014 Oct;30(10):1927-9. doi: 10.1185/03007995.2014.938150. Epub 2014 Jul 7. No abstract available.


Vocabulary development and intervention for English learners in the early grades.

Baker DL, Al Otaiba S, Ortiz M, Correa V, Cole R.

Adv Child Dev Behav. 2014;46:281-338.


Evaluation of two commercial omalizumab/free IgE immunoassays: implications of use during therapy.

Baker DL, Peng K, Cheu M, Fischer SK.

Curr Med Res Opin. 2014 May;30(5):913-22. doi: 10.1185/03007995.2013.877435. Epub 2014 Jan 24.


Targeting the hydrophobic pocket of autotaxin with virtual screening of inhibitors identifies a common aromatic sulfonamide structural motif.

Fells JI, Lee SC, Norman DD, Tsukahara R, Kirby JR, Nelson S, Seibel W, Papoian R, Patil R, Miller DD, Parrill AL, Pham TC, Baker DL, Bittman R, Tigyi G.

FEBS J. 2014 Feb;281(4):1017-28. doi: 10.1111/febs.12674. Epub 2014 Jan 15.


Medulloblastoma Down Under 2013: a report from the third annual meeting of the International Medulloblastoma Working Group.

Gottardo NG, Hansford JR, McGlade JP, Alvaro F, Ashley DM, Bailey S, Baker DL, Bourdeaut F, Cho YJ, Clay M, Clifford SC, Cohn RJ, Cole CH, Dallas PB, Downie P, Doz F, Ellison DW, Endersby R, Fisher PG, Hassall T, Heath JA, Hii HL, Jones DT, Junckerstorff R, Kellie S, Kool M, Kotecha RS, Lichter P, Laughton SJ, Lee S, McCowage G, Northcott PA, Olson JM, Packer RJ, Pfister SM, Pietsch T, Pizer B, Pomeroy SL, Remke M, Robinson GW, Rutkowski S, Schoep T, Shelat AA, Stewart CF, Sullivan M, Taylor MD, Wainwright B, Walwyn T, Weiss WA, Williamson D, Gajjar A.

Acta Neuropathol. 2014 Feb;127(2):189-201. doi: 10.1007/s00401-013-1213-7. Epub 2013 Nov 22.


Basic nursing care to prevent nonventilator hospital-acquired pneumonia.

Quinn B, Baker DL, Cohen S, Stewart JL, Lima CA, Parise C.

J Nurs Scholarsh. 2014 Jan;46(1):11-9. doi: 10.1111/jnu.12050. Epub 2013 Sep 30.


Autotaxin inhibition: development and application of computational tools to identify site-selective lead compounds.

Norman DD, Ibezim A, Scott WE, White S, Parrill AL, Baker DL.

Bioorg Med Chem. 2013 Sep 1;21(17):5548-60. doi: 10.1016/j.bmc.2013.05.061. Epub 2013 Jun 11.


Hits of a high-throughput screen identify the hydrophobic pocket of autotaxin/lysophospholipase D as an inhibitory surface.

Fells JI, Lee SC, Fujiwara Y, Norman DD, Lim KG, Tsukahara R, Liu J, Patil R, Miller DD, Kirby RJ, Nelson S, Seibel W, Papoian R, Parrill AL, Baker DL, Bittman R, Tigyi G.

Mol Pharmacol. 2013 Sep;84(3):415-24. doi: 10.1124/mol.113.087080. Epub 2013 Jun 21.


Barriers and facilitators of cervical cancer screening among women of Hmong origin.

Fang DM, Baker DL.

J Health Care Poor Underserved. 2013 May;24(2):540-55. doi: 10.1353/hpu.2013.0067.


Learning to adapt during a surgical mission to remote Africa.

Baker DL.

AORN J. 2013 Apr;97(4):471-4. doi: 10.1016/j.aorn.2013.01.010. No abstract available.


Do bib clips pose a cross-contamination risk at the dental clinic?

Alt-Holland A, Srinivasan S, Lucier R, Kublin CL, Fong JM, Goldfein J, Baker DL, Park A, Finkelman M, Kawai T, Paster BJ, Kugel G.

Compend Contin Educ Dent. 2012 Jul;33(9 Suppl):S1-8.


Gold nanorods carrying paclitaxel for photothermal-chemotherapy of cancer.

Ren F, Bhana S, Norman DD, Johnson J, Xu L, Baker DL, Parrill AL, Huang X.

Bioconjug Chem. 2013 Mar 20;24(3):376-86. doi: 10.1021/bc300442d. Epub 2013 Feb 12.


High-yield membrane protein expression from E. coli using an engineered outer membrane protein F fusion.

Su PC, Si W, Baker DL, Berger BW.

Protein Sci. 2013 Apr;22(4):434-43. doi: 10.1002/pro.2224. Epub 2013 Feb 21.


A pilot study of tandem high-dose chemotherapy with stem cell rescue as consolidation for high-risk neuroblastoma: Children's Oncology Group study ANBL00P1.

Seif AE, Naranjo A, Baker DL, Bunin NJ, Kletzel M, Kretschmar CS, Maris JM, McGrady PW, von Allmen D, Cohn SL, London WB, Park JR, Diller LR, Grupp SA.

Bone Marrow Transplant. 2013 Jul;48(7):947-52. doi: 10.1038/bmt.2012.276. Epub 2013 Jan 21.


Effects of a paired bilingual reading program and an English-only program on the reading performance of English learners in Grades 1-3.

Baker DL, Park Y, Baker SK, Basaraba DL, Kame'enui EJ, Beck CT.

J Sch Psychol. 2012 Dec;50(6):737-58. doi: 10.1016/j.jsp.2012.09.002. Epub 2012 Sep 28.


Structure and catalytic function of sphingosine kinases: analysis by site-directed mutagenesis and enzyme kinetics.

Baker DL, Pham TC, Sparks MA.

Biochim Biophys Acta. 2013 Jan;1831(1):139-46. doi: 10.1016/j.bbalip.2012.09.006. Epub 2012 Sep 20. Review.


Passive transfer of maternal GnRH antibodies does not affect reproductive development in elk (Cervus elaphus nelsoni) calves.

Powers JG, Baker DL, Ackerman MG, Bruemmer JE, Spraker TR, Conner MM, Nett TM.

Theriogenology. 2012 Sep 1;78(4):830-41. doi: 10.1016/j.theriogenology.2012.03.033. Epub 2012 Apr 26.


Electrocatalytic and photocatalytic hydrogen production in aqueous solution by a molecular cobalt complex.

Singh WM, Baine T, Kudo S, Tian S, Ma XA, Zhou H, DeYonker NJ, Pham TC, Bollinger JC, Baker DL, Yan B, Webster CE, Zhao X.

Angew Chem Int Ed Engl. 2012 Jun 11;51(24):5941-4. doi: 10.1002/anie.201200082. Epub 2012 Apr 26. No abstract available.


Ligand-based autotaxin pharmacophore models reflect structure-based docking results.

Mize CD, Abbott AM, Gacasan SB, Parrill AL, Baker DL.

J Mol Graph Model. 2011 Nov;31:76-86. doi: 10.1016/j.jmgm.2011.09.004. Epub 2011 Sep 18.


Effects of gonadotropin-releasing hormone immunization on reproductive function and behavior in captive female Rocky Mountain elk (Cervus elaphus nelsoni).

Powers JG, Baker DL, Davis TL, Conner MM, Lothridge AH, Nett TM.

Biol Reprod. 2011 Dec;85(6):1152-60. doi: 10.1095/biolreprod.110.088237. Epub 2011 Jul 13.


Benzyl and naphthalene methylphosphonic acid inhibitors of autotaxin with anti-invasive and anti-metastatic activity.

Gupte R, Patil R, Liu J, Wang Y, Lee SC, Fujiwara Y, Fells J, Bolen AL, Emmons-Thompson K, Yates CR, Siddam A, Panupinthu N, Pham TC, Baker DL, Parrill AL, Mills GB, Tigyi G, Miller DD.

ChemMedChem. 2011 May 2;6(5):922-35. doi: 10.1002/cmdc.201000425. Epub 2011 Apr 4.


The phospholipase A1 activity of lysophospholipase A-I links platelet activation to LPA production during blood coagulation.

Bolen AL, Naren AP, Yarlagadda S, Beranova-Giorgianni S, Chen L, Norman D, Baker DL, Rowland MM, Best MD, Sano T, Tsukahara T, Liliom K, Igarashi Y, Tigyi G.

J Lipid Res. 2011 May;52(5):958-70. doi: 10.1194/jlr.M013326. Epub 2011 Mar 9.


Developing culturally responsive approaches with Southeast Asian American families experiencing developmental disabilities.

Baker DL, Miller E, Dang MT, Yaangh CS, Hansen RL.

Pediatrics. 2010 Dec;126 Suppl 3:S146-50. doi: 10.1542/peds.2010-1466I.


Translation of health surveys using mixed methods.

Baker DL, Melnikow J, Ly MY, Shoultz J, Niederhauser V, Diaz-Escamilla R.

J Nurs Scholarsh. 2010 Dec;42(4):430-8. doi: 10.1111/j.1547-5069.2010.01368.x. Epub 2010 Oct 7.


Synthesis and pharmacological evaluation of the stereoisomers of 3-carba cyclic-phosphatidic acid.

Gupte R, Siddam A, Lu Y, Li W, Fujiwara Y, Panupinthu N, Pham TC, Baker DL, Parrill AL, Gotoh M, Murakami-Murofushi K, Kobayashi S, Mills GB, Tigyi G, Miller DD.

Bioorg Med Chem Lett. 2010 Dec 15;20(24):7525-8. doi: 10.1016/j.bmcl.2010.09.115. Epub 2010 Oct 8.


Autotaxin inhibitors: a perspective on initial medicinal chemistry efforts.

Parrill AL, Baker DL.

Expert Opin Ther Pat. 2010 Dec;20(12):1619-25. doi: 10.1517/13543776.2010.533658. Epub 2010 Nov 4.


Outcome after reduced chemotherapy for intermediate-risk neuroblastoma.

Baker DL, Schmidt ML, Cohn SL, Maris JM, London WB, Buxton A, Stram D, Castleberry RP, Shimada H, Sandler A, Shamberger RC, Look AT, Reynolds CP, Seeger RC, Matthay KK; Children’s Oncology Group.

N Engl J Med. 2010 Sep 30;363(14):1313-23. doi: 10.1056/NEJMoa1001527.


Phospholipase D2-dependent inhibition of the nuclear hormone receptor PPARgamma by cyclic phosphatidic acid.

Tsukahara T, Tsukahara R, Fujiwara Y, Yue J, Cheng Y, Guo H, Bolen A, Zhang C, Balazs L, Re F, Du G, Frohman MA, Baker DL, Parrill AL, Uchiyama A, Kobayashi T, Murakami-Murofushi K, Tigyi G.

Mol Cell. 2010 Aug 13;39(3):421-32. doi: 10.1016/j.molcel.2010.07.022.


(S)-FTY720-vinylphosphonate, an analogue of the immunosuppressive agent FTY720, is a pan-antagonist of sphingosine 1-phosphate GPCR signaling and inhibits autotaxin activity.

Valentine WJ, Kiss GN, Liu J, E S, Gotoh M, Murakami-Murofushi K, Pham TC, Baker DL, Parrill AL, Lu X, Sun C, Bittman R, Pyne NJ, Tigyi G.

Cell Signal. 2010 Oct;22(10):1543-53. doi: 10.1016/j.cellsig.2010.05.023. Epub 2010 Jun 4.


Gene-based outcome prediction in multiple cohorts of pediatric T-cell acute lymphoblastic leukemia: a Children's Oncology Group study.

Cleaver AL, Beesley AH, Firth MJ, Sturges NC, O'Leary RA, Hunger SP, Baker DL, Kees UR.

Mol Cancer. 2010 May 12;9:105. doi: 10.1186/1476-4598-9-105.


Pharmacophore development and application toward the identification of novel, small-molecule autotaxin inhibitors.

North EJ, Howard AL, Wanjala IW, Pham TC, Baker DL, Parrill AL.

J Med Chem. 2010 Apr 22;53(8):3095-105. doi: 10.1021/jm901718z.


Perception of barriers to immunization among parents of Hmong origin in California.

Baker DL, Dang MT, Ly MY, Diaz R.

Am J Public Health. 2010 May;100(5):839-45. doi: 10.2105/AJPH.2009.175935. Epub 2010 Mar 18.


The role of the medical science liaison in industry.

Baker DL.

AORN J. 2010 Mar;91(3):394-8. doi: 10.1016/j.aorn.2010.01.008.


Optimization of a pipemidic acid autotaxin inhibitor.

Hoeglund AB, Bostic HE, Howard AL, Wanjala IW, Best MD, Baker DL, Parrill AL.

J Med Chem. 2010 Feb 11;53(3):1056-66. doi: 10.1021/jm9012328.


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