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Items: 1 to 50 of 218

1.

Friomaramide, a Highly Modified Linear Hexapeptide from an Antarctic Sponge, Inhibits Plasmodium falciparum Liver-Stage Development.

Knestrick MA, Wilson NG, Roth A, Adams JH, Baker BJ.

J Nat Prod. 2019 Aug 12. doi: 10.1021/acs.jnatprod.9b00362. [Epub ahead of print]

PMID:
31403291
2.

Kinetics and identities of extracellular peptidases in subsurface sediments of the White Oak River Estuary, NC.

Steen AD, Kevorkian RT, Bird JT, Dombrowski N, Baker BJ, Hagen SM, Mulligan KH, Schmidt JM, Webber AT, Royalty T, Alperin MJ.

Appl Environ Microbiol. 2019 Jul 19. pii: AEM.00102-19. doi: 10.1128/AEM.00102-19. [Epub ahead of print]

3.

New Microbial Lineages Capable of Carbon Fixation and Nutrient Cycling in Deep-Sea Sediments of the Northern South China Sea.

Huang JM, Baker BJ, Li JT, Wang Y.

Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00523-19. doi: 10.1128/AEM.00523-19. Print 2019 Aug 1.

PMID:
31126943
4.

Asgard archaea capable of anaerobic hydrocarbon cycling.

Seitz KW, Dombrowski N, Eme L, Spang A, Lombard J, Sieber JR, Teske AP, Ettema TJG, Baker BJ.

Nat Commun. 2019 Apr 23;10(1):1822. doi: 10.1038/s41467-019-09364-x.

5.

Anverenes B⁻E, New Polyhalogenated Monoterpenes from the Antarctic Red Alga Plocamium cartilagineum.

Shilling AJ, von Salm JL, Sanchez AR, Kee Y, Amsler CD, McClintock JB, Baker BJ.

Mar Drugs. 2019 Apr 17;17(4). pii: E230. doi: 10.3390/md17040230.

6.

Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism.

Spang A, Stairs CW, Dombrowski N, Eme L, Lombard J, Caceres EF, Greening C, Baker BJ, Ettema TJG.

Nat Microbiol. 2019 Jul;4(7):1138-1148. doi: 10.1038/s41564-019-0406-9. Epub 2019 Apr 1.

PMID:
30936488
7.

Mapping of excitatory and inhibitory postsynaptic potentials of neuronal populations in hippocampal slices using the GEVI, ArcLight.

Nakajima R, Baker BJ.

J Phys D Appl Phys. 2018 Dec 19;51(50). pii: 504003. doi: 10.1088/1361-6463/aae2e3. Epub 2018 Oct 16.

8.

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Baker BJ, Seitz KW, Temperton B, Campbell LG, Rabalais NN, Henrissat B, Mason OU.

Microbiol Resour Announc. 2018 Sep 6;7(9). pii: e01033-18. doi: 10.1128/MRA.01033-18. eCollection 2018 Sep.

9.

Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments.

Dombrowski N, Teske AP, Baker BJ.

Nat Commun. 2018 Nov 27;9(1):4999. doi: 10.1038/s41467-018-07418-0.

10.

Optical consequences of a genetically-encoded voltage indicator with a pH sensitive fluorescent protein.

Kang BE, Lee S, Baker BJ.

Neurosci Res. 2019 Sep;146:13-21. doi: 10.1016/j.neures.2018.10.006. Epub 2018 Oct 18. Review.

11.

A dimeric fluorescent protein yields a bright, red-shifted GEVI capable of population signals in brain slice.

Yi B, Kang BE, Lee S, Braubach S, Baker BJ.

Sci Rep. 2018 Oct 12;8(1):15199. doi: 10.1038/s41598-018-33297-y.

12.

Exploitation of Mangrove Endophytic Fungi for Infectious Disease Drug Discovery.

Demers DH, Knestrick MA, Fleeman R, Tawfik R, Azhari A, Souza A, Vesely B, Netherton M, Gupta R, Colon BL, Rice CA, Rodríguez-Pérez MA, Rohde KH, Kyle DE, Shaw LN, Baker BJ.

Mar Drugs. 2018 Oct 10;16(10). pii: E376. doi: 10.3390/md16100376.

13.

Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids.

Narrowe AB, Spang A, Stairs CW, Caceres EF, Baker BJ, Miller CS, Ettema TJG.

Genome Biol Evol. 2018 Sep 1;10(9):2380-2393. doi: 10.1093/gbe/evy154.

14.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
15.

Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil.

Bacosa HP, Erdner DL, Rosenheim BE, Shetty P, Seitz KW, Baker BJ, Liu Z.

ISME J. 2018 Oct;12(10):2532-2543. doi: 10.1038/s41396-018-0190-1. Epub 2018 Jun 27.

PMID:
29950702
16.

Monitoring voltage fluctuations of intracellular membranes.

Sepehri Rad M, Cohen LB, Braubach O, Baker BJ.

Sci Rep. 2018 May 2;8(1):6911. doi: 10.1038/s41598-018-25083-7.

17.

ART and lifelong IPT for health care workers with HIV: a priority for infection control.

Baker BJ.

Int J Tuberc Lung Dis. 2018 Apr 1;22(4):356. doi: 10.5588/ijtld.18.0135. No abstract available.

PMID:
29562979
18.

Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota.

Liu Y, Zhou Z, Pan J, Baker BJ, Gu JD, Li M.

ISME J. 2018 Apr;12(4):1021-1031. doi: 10.1038/s41396-018-0060-x. Epub 2018 Feb 14.

19.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

20.

Keikipukalides, Furanocembrane Diterpenes from the Antarctic Deep Sea Octocoral Plumarella delicatissima.

Thomas SAL, von Salm JL, Clark S, Ferlita S, Nemani P, Azhari A, Rice CA, Wilson NG, Kyle DE, Baker BJ.

J Nat Prod. 2018 Jan 26;81(1):117-123. doi: 10.1021/acs.jnatprod.7b00732. Epub 2017 Dec 20.

21.

Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota.

Chen LX, Méndez-García C, Dombrowski N, Servín-Garcidueñas LE, Eloe-Fadrosh EA, Fang BZ, Luo ZH, Tan S, Zhi XY, Hua ZS, Martinez-Romero E, Woyke T, Huang LN, Sánchez J, Peláez AI, Ferrer M, Baker BJ, Shu WS.

ISME J. 2018 Mar;12(3):756-775. doi: 10.1038/s41396-017-0002-z. Epub 2017 Dec 8.

22.

Voltage and Calcium Imaging of Brain Activity.

Sepehri Rad M, Choi Y, Cohen LB, Baker BJ, Zhong S, Storace DA, Braubach OR.

Biophys J. 2017 Nov 21;113(10):2160-2167. doi: 10.1016/j.bpj.2017.09.040. Epub 2017 Nov 1. Review.

23.

Modulating the Voltage-sensitivity of a Genetically Encoded Voltage Indicator.

Jung A, Rajakumar D, Yoon BJ, Baker BJ.

Exp Neurobiol. 2017 Oct;26(5):241-251. doi: 10.5607/en.2017.26.5.241. Epub 2017 Oct 25.

24.

Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico "Dead Zone".

Thrash JC, Seitz KW, Baker BJ, Temperton B, Gillies LE, Rabalais NN, Henrissat B, Mason OU.

MBio. 2017 Sep 12;8(5). pii: e01017-17. doi: 10.1128/mBio.01017-17.

25.

Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments.

Dombrowski N, Seitz KW, Teske AP, Baker BJ.

Microbiome. 2017 Aug 23;5(1):106. doi: 10.1186/s40168-017-0322-2.

26.

The Maternal Infant Microbiome: Considerations for Labor and Birth.

Dunn AB, Jordan S, Baker BJ, Carlson NS.

MCN Am J Matern Child Nurs. 2017 Nov/Dec;42(6):318-325. doi: 10.1097/NMC.0000000000000373.

27.

Improving a genetically encoded voltage indicator by modifying the cytoplasmic charge composition.

Lee S, Geiller T, Jung A, Nakajima R, Song YK, Baker BJ.

Sci Rep. 2017 Aug 15;7(1):8286. doi: 10.1038/s41598-017-08731-2.

28.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Erratum in: Nat Biotechnol. 2018 Feb 6;36(2):196. Nat Biotechnol. 2018 Jul 6;36(7):660.

29.

Deleterious Effects From Occupational Exposure to Ethylene Thiourea in Pregnant Women.

Mutic AD, Baker BJ, McCauley LA.

Workplace Health Saf. 2017 Dec;65(12):595-602. doi: 10.1177/2165079916687312. Epub 2017 May 16.

PMID:
28511580
30.

Scale-up of collaborative TB/HIV activities in Guyana.

Baker BJ, Peterson B, Mohanlall J, Singh S, Hicks C, Jacobs R, Ramos R, Allen B, Pevzner E.

Rev Panam Salud Publica. 2017 Apr 20;41:e6.

31.

Cold-water marine natural products, 2006 to 2016.

Soldatou S, Baker BJ.

Nat Prod Rep. 2017 Jun 7;34(6):585-626. doi: 10.1039/c6np00127k. Review.

PMID:
28322384
32.

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches.

Lazar CS, Baker BJ, Seitz KW, Teske AP.

ISME J. 2017 Apr;11(4):1058. doi: 10.1038/ismej.2017.8. No abstract available.

33.

Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches.

Lazar CS, Baker BJ, Seitz KW, Teske AP.

ISME J. 2017 May;11(5):1118-1129. doi: 10.1038/ismej.2016.189. Epub 2017 Jan 13. Erratum in: ISME J. 2017 Apr;11(4):1058.

34.

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, Spang A, Ettema TJ.

Nature. 2017 Jan 19;541(7637):353-358. doi: 10.1038/nature21031. Epub 2017 Jan 11.

35.

Elucidating a chemical defense mechanism of Antarctic sponges: A computational study.

Vankayala SL, Kearns FL, Baker BJ, Larkin JD, Lee Woodcock H.

J Mol Graph Model. 2017 Jan;71:104-115. doi: 10.1016/j.jmgm.2016.11.004. Epub 2016 Nov 10.

PMID:
27894019
36.

Consonantal timing and release burst acoustics distinguish multiple coronal stop place distinctions in Wubuy (Australia).

Bundgaard-Nielsen RL, Kroos C, Baker BJ, Best CT, Harvey M.

J Acoust Soc Am. 2016 Oct;140(4):2794.

PMID:
27794291
37.

Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill.

Dombrowski N, Donaho JA, Gutierrez T, Seitz KW, Teske AP, Baker BJ.

Nat Microbiol. 2016 May 9;1(7):16057. doi: 10.1038/nmicrobiol.2016.57.

PMID:
27572965
38.

A new view of the tree of life.

Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, Thomas BC, Banfield JF.

Nat Microbiol. 2016 Apr 11;1:16048. doi: 10.1038/nmicrobiol.2016.48.

PMID:
27572647
39.

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea.

Baker BJ, Saw JH, Lind AE, Lazar CS, Hinrichs KU, Teske AP, Ettema TJ.

Nat Microbiol. 2016 Feb 15;1:16002. doi: 10.1038/nmicrobiol.2016.2.

PMID:
27572167
40.

Culture Independent Genomic Comparisons Reveal Environmental Adaptations for Altiarchaeales.

Bird JT, Baker BJ, Probst AJ, Podar M, Lloyd KG.

Front Microbiol. 2016 Aug 5;7:1221. doi: 10.3389/fmicb.2016.01221. eCollection 2016.

41.

Optogenetic Monitoring of Synaptic Activity with Genetically Encoded Voltage Indicators.

Nakajima R, Jung A, Yoon BJ, Baker BJ.

Front Synaptic Neurosci. 2016 Aug 5;8:22. doi: 10.3389/fnsyn.2016.00022. eCollection 2016. Review.

42.

Imaging voltage in zebrafish as a route to characterizing a vertebrate functional connectome: promises and pitfalls of genetically encoded indicators.

Kibat C, Krishnan S, Ramaswamy M, Baker BJ, Jesuthasan S.

J Neurogenet. 2016 Jun;30(2):80-8. doi: 10.1080/01677063.2016.1180384.

PMID:
27328843
43.

Darwinolide, a New Diterpene Scaffold That Inhibits Methicillin-Resistant Staphylococcus aureus Biofilm from the Antarctic Sponge Dendrilla membranosa.

von Salm JL, Witowski CG, Fleeman RM, McClintock JB, Amsler CD, Shaw LN, Baker BJ.

Org Lett. 2016 Jun 3;18(11):2596-9. doi: 10.1021/acs.orglett.6b00979. Epub 2016 May 13.

44.

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling.

Wasmund K, Cooper M, Schreiber L, Lloyd KG, Baker BJ, Petersen DG, Jørgensen BB, Stepanauskas R, Reinhardt R, Schramm A, Loy A, Adrian L.

MBio. 2016 May 3;7(3). pii: e00266-16. doi: 10.1128/mBio.00266-16.

45.

Toward Better Genetically Encoded Sensors of Membrane Potential.

Storace D, Sepehri Rad M, Kang B, Cohen LB, Hughes T, Baker BJ.

Trends Neurosci. 2016 May;39(5):277-289. doi: 10.1016/j.tins.2016.02.005. Review.

47.

Imaging Membrane Potential with Two Types of Genetically Encoded Fluorescent Voltage Sensors.

Lee S, Piao HH, Sepheri-Rad M, Jung A, Sung U, Song YK, Baker BJ.

J Vis Exp. 2016 Feb 4;(108):e53566. doi: 10.3791/53566.

48.

Abrupt Decline in Tuberculosis among Foreign-Born Persons in the United States.

Baker BJ, Winston CA, Liu Y, France AM, Cain KP.

PLoS One. 2016 Feb 10;11(2):e0147353. doi: 10.1371/journal.pone.0147353. eCollection 2016.

49.

Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction.

Seitz KW, Lazar CS, Hinrichs KU, Teske AP, Baker BJ.

ISME J. 2016 Jul;10(7):1696-705. doi: 10.1038/ismej.2015.233. Epub 2016 Jan 29.

50.

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs.

Hu P, Tom L, Singh A, Thomas BC, Baker BJ, Piceno YM, Andersen GL, Banfield JF.

MBio. 2016 Jan 19;7(1):e01669-15. doi: 10.1128/mBio.01669-15.

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