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RadAA: A Command-line Tool for Identification of Radical Amino Acid Changes in Multiple Sequence Alignments.

Seim I, Baker AM, Chopin LK.

Mol Inform. 2018 Jul 17. doi: 10.1002/minf.201800057. [Epub ahead of print]


Valproic acid is protective in cellular and worm models of oculopharyngeal muscular dystrophy.

Abu-Baker A, Parker A, Ramalingam S, Laganiere J, Brais B, Neri C, Dion P, Rouleau G.

Neurology. 2018 Jul 13. pii: 10.1212/WNL.0000000000005942. doi: 10.1212/WNL.0000000000005942. [Epub ahead of print]


Signs, Fines and Compliance Officers: A Systematic Review of Strategies for Enforcing Smoke-Free Policy.

Wynne O, Guillaumier A, Twyman L, McCrabb S, Denham AMJ, Paul C, Baker AL, Bonevski B.

Int J Environ Res Public Health. 2018 Jul 2;15(7). pii: E1386. doi: 10.3390/ijerph15071386. Review.


Multiscale Computational Analysis of Right Ventricular Mechanoenergetics.

Pewowaruk RJ, Philip JL, Tewari SG, Chen CS, Nyaeme MS, Wang Z, Tabima DM, Baker AJ, Beard DA, Chesler NC.

J Biomech Eng. 2018 Aug 1;140(8). doi: 10.1115/1.4040044.


Impaired Myofilament Contraction Drives Right Ventricular Failure Secondary to Pressure Overload: Model Simulations, Experimental Validation, and Treatment Predictions.

Philip JL, Pewowaruk RJ, Chen CS, Tabima DM, Beard DA, Baker AJ, Chesler NC.

Front Physiol. 2018 Jun 27;9:731. doi: 10.3389/fphys.2018.00731. eCollection 2018.


Improving cardiovascular health and quality of life in people with severe mental illness: study protocol for a randomised controlled trial.

Battersby M, Kidd MR, Licinio J, Aylward P, Baker A, Ratcliffe J, Quinn S, Castle DJ, Zabeen S, Fairweather-Schmidt AK, Lawn S.

Trials. 2018 Jul 11;19(1):366. doi: 10.1186/s13063-018-2748-7.


Evolutionary history of human colitis-associated colorectal cancer.

Baker AM, Cross W, Curtius K, Al Bakir I, Choi CR, Davis HL, Temko D, Biswas S, Martinez P, Williams MJ, Lindsay JO, Feakins R, Vega R, Hayes SJ, Tomlinson IPM, McDonald SAC, Moorghen M, Silver A, East JE, Wright NA, Wang LM, Rodriguez-Justo M, Jansen M, Hart AL, Leedham SJ, Graham TA.

Gut. 2018 Jul 10. pii: gutjnl-2018-316191. doi: 10.1136/gutjnl-2018-316191. [Epub ahead of print]


Economic Outcomes of a Precision Medicine Blood Test To Assess Obstructive Coronary Artery Disease: Results from the PRESET Registry.

Ladapo JA, Budoff MJ, Azarmina P, Sharp D, Baker A, Maniet B, Herman L, Monane M.

Manag Care. 2018 Jun;27(6):34-40.


Test Performance Characteristics of the AIR, GAD-7 and HADS-Anxiety Screening Questionnaires for Anxiety in Chronic Obstructive Pulmonary Disease.

Baker AM, Holbrook JT, Yohannes AM, Eakin MN, Sugar EA, Henderson RJ, Casper AS, Kaminsky DA, Rea AL, Mathews AM, Que LG, Ramsdell JW, Gerald LB, Wise RA, Hanania NA; for American Lung Association Airways Clinical Research Centers.

Ann Am Thorac Soc. 2018 Jul 9. doi: 10.1513/AnnalsATS.201708-631OC. [Epub ahead of print]


Aerosol trace metal leaching and impacts on marine microorganisms.

Mahowald NM, Hamilton DS, Mackey KRM, Moore JK, Baker AR, Scanza RA, Zhang Y.

Nat Commun. 2018 Jul 5;9(1):2614. doi: 10.1038/s41467-018-04970-7. Review.


Genesis of the College of Intensive Care Medicine of Australia and New Zealand.

Baker AB.

Anaesth Intensive Care. 2018 Mar;46(7):35-51.


Human Myocardium Has a Robust α1A-Subtype Adrenergic Receptor Inotropic Response.

Janssen PML, Canan BD, Kilic A, Whitson BA, Baker AJ.

J Cardiovasc Pharmacol. 2018 May 25. doi: 10.1097/FJC.0000000000000604. [Epub ahead of print]


Cervical Sympathetic Chain Schwannoma Masquerading as a Vagus Nerve Schwannoma Complicated by Postoperative Horner's Syndrome and Facial Pain: A Case Report.

Baker AT, Homewood TJ, Baker TR.

Int J Surg Case Rep. 2018 Jun 9;49:4-7. doi: 10.1016/j.ijscr.2018.06.001. [Epub ahead of print]


The impact of fire on the geochemistry of speleothem-forming drip water in a sub-alpine cave.

Coleborn K, Baker A, Treble PC, Andersen MS, Baker A, Tadros CV, Tozer M, Fairchild IJ, Spate A, Meehan S.

Sci Total Environ. 2018 Jun 12;642:408-420. doi: 10.1016/j.scitotenv.2018.05.310. [Epub ahead of print]


Designer Oncolytic Adenovirus: Coming of Age.

Baker AT, Aguirre-Hernández C, Halldén G, Parker AL.

Cancers (Basel). 2018 Jun 14;10(6). pii: E201. doi: 10.3390/cancers10060201. Review.


Inhibition of HER2 Enriches for Jagged1-dependent Breast Cancer Stem Cells: Role for Membrane Jagged1.

Shah D, Wyatt D, Baker A, Simms P, Peiffer DS, Fernandez ML, Rakha EA, Green AR, Filipovic A, Miele L, Osipo C.

Clin Cancer Res. 2018 Jun 12. pii: clincanres.1952.2017. doi: 10.1158/1078-0432.CCR-17-1952. [Epub ahead of print]


Real-time detection of faecally contaminated drinking water with tryptophan-like fluorescence: defining threshold values.

Sorensen JPR, Baker A, Cumberland SA, Lapworth DJ, MacDonald AM, Pedley S, Taylor RG, Ward JST.

Sci Total Environ. 2018 May 1;622-623:1250-1257. doi: 10.1016/j.scitotenv.2017.11.162. Epub 2017 Dec 13.


Diagnosing pre-clinical dementia: the NZ Genetic Frontotemporal Dementia Study (FTDGeNZ).

Ryan B, Baker A, Ilse C, Brickell KL, Kersten HM, Danesh-Meyer HV, Williams JM, Addis DR, Tippett L, Curtis MA.

N Z Med J. 2018 Jun 8;131(1476):88-91. No abstract available.


The Mindful Personality II: Exploring the Metatraits from a Cybernetic Perspective.

Hanley AW, Baker AK, Garland EL.

Mindfulness (N Y). 2018 Jun;9(3):972-979. doi: 10.1007/s12671-017-0836-5. Epub 2017 Oct 24.


Non coding RNAs in vascular disease - from basic science to clinical applications: Scientific update from the Working Group of Myocardial Function of the European Society of Cardiology

Fiedler J, Baker AH, Dimmeler S, Heymans S, Mayr M, Thum T.

Cardiovasc Res. 2018 May 23. doi: 10.1093/cvr/cvy121. [Epub ahead of print]


Ad5NULL-A20: A Tropism-Modified, αvβ6 Integrin-Selective Oncolytic Adenovirus for Epithelial Ovarian Cancer Therapies.

Uusi-Kerttula H, Davies JA, Thompson JM, Wongthida P, Evgin L, Shim KG, Bradshaw A, Baker AT, Rizkallah PJ, Jones R, Hanna L, Hudson E, Vile RG, Chester JD, Parker AL.

Clin Cancer Res. 2018 May 24. doi: 10.1158/1078-0432.CCR-18-1089. [Epub ahead of print]


Specialized Subpopulations of Deep-Layer Pyramidal Neurons in the Neocortex: Bridging Cellular Properties to Functional Consequences.

Baker A, Kalmbach B, Morishima M, Kim J, Juavinett A, Li N, Dembrow N.

J Neurosci. 2018 Jun 13;38(24):5441-5455. doi: 10.1523/JNEUROSCI.0150-18.2018. Epub 2018 May 21.


Telephone-delivered psychosocial interventions targeting key health priorities in adults with a psychotic disorder: systematic review.

Baker AL, Turner A, Beck A, Berry K, Haddock G, Kelly PJ, Bucci S.

Psychol Med. 2018 May 25:1-21. doi: 10.1017/S0033291718001125. [Epub ahead of print]


Characterization of carfilzomib-resistant non-small cell lung cancer cell lines.

Hanke NT, Imler E, Marron MT, Seligmann BE, Garland LL, Baker AF.

J Cancer Res Clin Oncol. 2018 May 15. doi: 10.1007/s00432-018-2662-0. [Epub ahead of print]


Spring-summer net community production, new production, particle export and related water column biogeochemical processes in the marginal sea ice zone of the Western Antarctic Peninsula 2012-2014.

Ducklow HW, Stukel MR, Eveleth R, Doney SC, Jickells T, Schofield O, Baker AR, Brindle J, Chance R, Cassar N.

Philos Trans A Math Phys Eng Sci. 2018 Jun 28;376(2122). pii: 20170177. doi: 10.1098/rsta.2017.0177.


Dispositional mindfulness and prescription opioid misuse among chronic pain patients: Craving and attention to positive information as mediating mechanisms.

Priddy SE, Hanley AW, Riquino MR, Platt KA, Baker AK, Garland EL.

Drug Alcohol Depend. 2018 Jul 1;188:86-93. doi: 10.1016/j.drugalcdep.2018.03.040. Epub 2018 May 3.


Internet-Based Programs Incorporating Behavior Change Techniques Are Associated With Increased Smoking Cessation in the General Population: A Systematic Review and Meta-analysis.

McCrabb S, Baker AL, Attia J, Skelton E, Twyman L, Palazzi K, McCarter K, Ku D, Bonevski B.

Ann Behav Med. 2018 May 10. doi: 10.1093/abm/kay026. [Epub ahead of print]


Managing medications for individuals living with a dementia: Evaluating a web-based information resource for informal carers.

Horne F, Burns P, Traynor V, Gillespie R, Mullan J, Baker A, Harrison L, Win KT.

Int J Older People Nurs. 2018 May 10:e12198. doi: 10.1111/opn.12198. [Epub ahead of print]


Notch-1-PTEN-ERK1/2 signaling axis promotes HER2+ breast cancer cell proliferation and stem cell survival.

Baker A, Wyatt D, Bocchetta M, Li J, Filipovic A, Green A, Peiffer DS, Fuqua S, Miele L, Albain KS, Osipo C.

Oncogene. 2018 May 10. doi: 10.1038/s41388-018-0251-y. [Epub ahead of print]


Car seat education: A randomized controlled trial of teaching methods.

Kuroiwa E, Ragar RL, Langlais CS, Baker A, Linnaus ME, Notrica DM.

Injury. 2018 May 3. pii: S0020-1383(18)30224-9. doi: 10.1016/j.injury.2018.05.003. [Epub ahead of print]


Barriers and opportunities related to extracorporeal cardiopulmonary resuscitation for out-of-hospital cardiac arrest in Canada: A report from the first meeting of the Canadian ECPR Research Working Group.

Brooks SC, Shemie SD, Torrance S, Hornby L, Gillrie C, Grunau B, Nagpal AD, Baker A, Christenson J, Gill J, Morrison L.

CJEM. 2018 May 7:1-11. doi: 10.1017/cem.2017.429. [Epub ahead of print]


Nimodipine treatment does not benefit juvenile ferrets with kaolin-induced hydrocephalus.

Di Curzio DL, Mao X, Baker A, Del Bigio MR.

Fluids Barriers CNS. 2018 May 3;15(1):14. doi: 10.1186/s12987-018-0099-0.


Tuberculosis screening in an aged care residential facility in a low-incidence setting.

Moyo N, Trauer J, Trevan P, Baker AM, Musemburi J, McGrath K, Nolan A, McIntyre E, Hulls J, Denholm JT.

Commun Dis Intell Q Rep. 2017 Sep 1;41(3):E209-E211.


A Comparative Report on Intracranial Tumor-to-Tumor Metastasis and Collision Tumors.

Syed S, Karambizi DI, Baker A, Groh DM, Toms SA.

World Neurosurg. 2018 Apr 26. pii: S1878-8750(18)30829-5. doi: 10.1016/j.wneu.2018.04.109. [Epub ahead of print]


Robust Revascularization in Models of Limb Ischemia Using a Clinically Translatable Human Stem Cell-Derived Endothelial Cell Product.

MacAskill MG, Saif J, Condie A, Jansen MA, MacGillivray TJ, Tavares AAS, Fleisinger L, Spencer HL, Besnier M, Martin E, Biglino G, Newby DE, Hadoke PWF, Mountford JC, Emanueli C, Baker AH.

Mol Ther. 2018 Jul 5;26(7):1669-1684. doi: 10.1016/j.ymthe.2018.03.017. Epub 2018 Mar 28.


Individual differences and day-to-day fluctuations in goal planning and type 1 diabetes management.

Wiebe DJ, Baker AC, Suchy Y, Stump TK, Berg CA.

Health Psychol. 2018 Jul;37(7):638-646. doi: 10.1037/hea0000624. Epub 2018 Apr 26.


Evaluating the efficacy of an integrated motivational interviewing and multi-modal exercise intervention for youth with major depression: Healthy Body, Healthy Mind randomised controlled trial protocol.

Nasstasia Y, Baker AL, Halpin SA, Hides L, Lewin TJ, Kelly BJ, Callister R.

Contemp Clin Trials Commun. 2017 Nov 24;9:13-22. doi: 10.1016/j.conctc.2017.11.007. eCollection 2018 Mar.


Euryalid brittle stars from the International Indian Ocean Expedition 1963-64 (Echinodermata: Ophiuroidea: Euryalida).

Baker AN, Okanishi M, Pawson DL.

Zootaxa. 2018 Mar 7;4392(1):1-27. doi: 10.11646/zootaxa.4392.1.1.


Blood biomarkers are associated with brain function and blood flow following sport concussion.

Di Battista AP, Churchill N, Schweizer TA, Rhind SG, Richards D, Baker AJ, Hutchison MG.

J Neuroimmunol. 2018 Jun 15;319:1-8. doi: 10.1016/j.jneuroim.2018.03.002. Epub 2018 Mar 18.


Recasting Human Vδ1 Lymphocytes in an Adaptive Role.

Davey MS, Willcox CR, Baker AT, Hunter S, Willcox BE.

Trends Immunol. 2018 Jun;39(6):446-459. doi: 10.1016/ Epub 2018 Apr 18. Review.


Smoking, drinking, and depression: comorbidity in head and neck cancer patients undergoing radiotherapy.

McCarter K, Baker AL, Britton B, Wolfenden L, Wratten C, Bauer J, Halpin SA, Carter G, Beck AK, Leigh L, Oldmeadow C.

Cancer Med. 2018 Jun;7(6):2382-2390. doi: 10.1002/cam4.1497. Epub 2018 Apr 19.


Do Periarticular Joint Infections Present an Increase in Infection Risk?

Seidelman J, Baker AW, Anderson DJ, Sexton DJ, Lewis SS.

Infect Control Hosp Epidemiol. 2018 Jul;39(7):890-891. doi: 10.1017/ice.2018.80. Epub 2018 Apr 15. No abstract available.


Implementing a Trauma-Informed Model of Care in a Community Acute Mental Health Team.

Moloney B, Cameron I, Baker A, Feeney J, Korner A, Kornhaber R, Cleary M, McLean L.

Issues Ment Health Nurs. 2018 Apr 12:1-7. doi: 10.1080/01612840.2018.1437855. [Epub ahead of print]


Does human endometrial LGR5 gene expression suggest the existence of another hormonally regulated epithelial stem cell niche?

Tempest N, Baker AM, Wright NA, Hapangama DK.

Hum Reprod. 2018 Jun 1;33(6):1052-1062. doi: 10.1093/humrep/dey083.


Impacts of human recreation on carnivores in protected areas.

Baker AD, Leberg PL.

PLoS One. 2018 Apr 5;13(4):e0195436. doi: 10.1371/journal.pone.0195436. eCollection 2018.


Tissue Inhibitor of Metalloproteinase-3 (TIMP-3) induces FAS dependent apoptosis in human vascular smooth muscle cells.

English WR, Ireland-Zecchini H, Baker AH, Littlewood TD, Bennett MR, Murphy G.

PLoS One. 2018 Apr 4;13(4):e0195116. doi: 10.1371/journal.pone.0195116. eCollection 2018.


Somatic POLE exonuclease domain mutations are early events in sporadic endometrial and colorectal carcinogenesis, determining driver mutational landscape, clonal neoantigen burden and immune response.

Temko D, Van Gool IC, Rayner E, Glaire M, Makino S, Brown M, Chegwidden L, Palles C, Depreeuw J, Beggs A, Stathopoulou C, Mason J, Baker AM, Williams M, Cerundolo V, Rei M, Taylor JC, Schuh A, Ahmed A, Amant F, Lambrechts D, Smit VT, Bosse T, Graham TA, Church DN, Tomlinson I.

J Pathol. 2018 Jul;245(3):283-296. doi: 10.1002/path.5081. Epub 2018 Apr 30.


Impact of Interstitial Ni on the Thermoelectric Properties of the Half-Heusler TiNiSn.

Barczak SA, Buckman J, Smith RI, Baker AR, Don E, Forbes I, Bos JG.

Materials (Basel). 2018 Mar 30;11(4). pii: E536. doi: 10.3390/ma11040536.


Novel method of estimating AROC using an injury risk curve for biomechanical injury metric selection.

Baker A, Hsu FC, Gayzik S.

Traffic Inj Prev. 2018 Feb 28;19(sup1):S174-S176. doi: 10.1080/15389588.2018.1426903.


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