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Items: 36

1.

Chasing Tails: Cathepsin-L Improves Structural Analysis of Histones by HX-MS.

Papanastasiou M, Mullahoo J, DeRuff KC, Bajrami B, Karageorgos I, Johnston SE, Peckner R, Myers SA, Carr SA, Jaffe JD.

Mol Cell Proteomics. 2019 Oct;18(10):2089-2098. doi: 10.1074/mcp.RA119.001325. Epub 2019 Aug 13.

PMID:
31409669
2.

Conservation of the structure and function of bacterial tryptophan synthases.

Michalska K, Gale J, Joachimiak G, Chang C, Hatzos-Skintges C, Nocek B, Johnston SE, Bigelow L, Bajrami B, Jedrzejczak RP, Wellington S, Hung DT, Nag PP, Fisher SL, Endres M, Joachimiak A.

IUCrJ. 2019 May 29;6(Pt 4):649-664. doi: 10.1107/S2052252519005955. eCollection 2019 Jul 1.

3.

CDK12-mediated transcriptional regulation of noncanonical NF-κB components is essential for signaling.

Henry KL, Kellner D, Bajrami B, Anderson JE, Beyna M, Bhisetti G, Cameron T, Capacci AG, Bertolotti-Ciarlet A, Feng J, Gao B, Hopkins B, Jenkins T, Li K, May-Dracka T, Murugan P, Wei R, Zeng W, Allaire N, Buckler A, Loh C, Juhasz P, Lucas B, Ennis KA, Vollman E, Cahir-McFarland E, Hett EC, Ols ML.

Sci Signal. 2018 Jul 31;11(541). pii: eaam8216. doi: 10.1126/scisignal.aam8216.

PMID:
30065029
4.

Gasdermin D Exerts Anti-inflammatory Effects by Promoting Neutrophil Death.

Kambara H, Liu F, Zhang X, Liu P, Bajrami B, Teng Y, Zhao L, Zhou S, Yu H, Zhou W, Silberstein LE, Cheng T, Han M, Xu Y, Luo HR.

Cell Rep. 2018 Mar 13;22(11):2924-2936. doi: 10.1016/j.celrep.2018.02.067.

5.

Positive Regulation of Interleukin-1β Bioactivity by Physiological ROS-Mediated Cysteine S-Glutathionylation.

Zhang X, Liu P, Zhang C, Chiewchengchol D, Zhao F, Yu H, Li J, Kambara H, Luo KY, Venkataraman A, Zhou Z, Zhou W, Zhu H, Zhao L, Sakai J, Chen Y, Ho YS, Bajrami B, Xu B, Silberstein LE, Cheng T, Xu Y, Ke Y, Luo HR.

Cell Rep. 2017 Jul 5;20(1):224-235. doi: 10.1016/j.celrep.2017.05.070.

6.

A small-molecule allosteric inhibitor of Mycobacterium tuberculosis tryptophan synthase.

Wellington S, Nag PP, Michalska K, Johnston SE, Jedrzejczak RP, Kaushik VK, Clatworthy AE, Siddiqi N, McCarren P, Bajrami B, Maltseva NI, Combs S, Fisher SL, Joachimiak A, Schreiber SL, Hung DT.

Nat Chem Biol. 2017 Sep;13(9):943-950. doi: 10.1038/nchembio.2420. Epub 2017 Jul 3.

PMID:
28671682
7.

Scaling Proteome-Wide Reactions of Activity-Based Probes.

Li S, Diego-Limpin PA, Bajrami B, Keshipeddy S, Lam YW, Deng B, Farrokhi V, McShane AJ, Nemati R, Howell AR, Yao X.

Anal Chem. 2017 Jun 20;89(12):6295-6299. doi: 10.1021/acs.analchem.7b01184. Epub 2017 Jun 5.

8.

Reactive Oxygen Species-Producing Myeloid Cells Act as a Bone Marrow Niche for Sterile Inflammation-Induced Reactive Granulopoiesis.

Zhu H, Kwak HJ, Liu P, Bajrami B, Xu Y, Park SY, Nombela-Arrieta C, Mondal S, Kambara H, Yu H, Chai L, Silberstein LE, Cheng T, Luo HR.

J Immunol. 2017 Apr 1;198(7):2854-2864. doi: 10.4049/jimmunol.1602006. Epub 2017 Feb 24.

9.

G-CSF maintains controlled neutrophil mobilization during acute inflammation by negatively regulating CXCR2 signaling.

Bajrami B, Zhu H, Kwak HJ, Mondal S, Hou Q, Geng G, Karatepe K, Zhang YC, Nombela-Arrieta C, Park SY, Loison F, Sakai J, Xu Y, Silberstein LE, Luo HR.

J Exp Med. 2016 Sep 19;213(10):1999-2018. doi: 10.1084/jem.20160393. Epub 2016 Aug 22.

10.

Development of structural marker peptides for cystic fibrosis transmembrane conductance regulator in cell plasma membrane by reversed-footprinting mass spectrometry.

Farrokhi V, Bajrami B, Nemati R, McShane AJ, Rueckert F, Wells B, Yao X.

Anal Chem. 2015 Sep 1;87(17):8603-7. doi: 10.1021/acs.analchem.5b01962. Epub 2015 Aug 13.

PMID:
26236917
11.

Erratum to: A Stable Human-Cell System Overexpressing Cystic Fibrosis Transmembrane Conductance Regulator Recombinant Protein at the Cell Surface.

Hildebrandt E, Ding H, Mulky A, Dai Q, Aleksandrov AA, Bajrami B, Diego PA, Wu X, Ray M, Naren AP, Riordan JR, Yao X, DeLucas LJ, Urbatsch IL, Kappes JC.

Mol Biotechnol. 2015 May;57(5):406. doi: 10.1007/s12033-015-9857-2. No abstract available.

PMID:
25808031
12.

Myeloid cell-derived reactive oxygen species externally regulate the proliferation of myeloid progenitors in emergency granulopoiesis.

Kwak HJ, Liu P, Bajrami B, Xu Y, Park SY, Nombela-Arrieta C, Mondal S, Sun Y, Zhu H, Chai L, Silberstein LE, Cheng T, Luo HR.

Immunity. 2015 Jan 20;42(1):159-71. doi: 10.1016/j.immuni.2014.12.017. Epub 2015 Jan 8.

13.

A stable human-cell system overexpressing cystic fibrosis transmembrane conductance regulator recombinant protein at the cell surface.

Hildebrandt E, Mulky A, Ding H, Dai Q, Aleksandrov AA, Bajrami B, Diego PA, Wu X, Ray M, Naren AP, Riordan JR, Yao X, DeLucas LJ, Urbatsch IL, Kappes JC.

Mol Biotechnol. 2015 May;57(5):391-405. doi: 10.1007/s12033-014-9830-5. Erratum in: Mol Biotechnol. 2015 May;57(5):406.

14.

Targeted proteomic quantitation of the absolute expression and turnover of cystic fibrosis transmembrane conductance regulator in the apical plasma membrane.

McShane AJ, Bajrami B, Ramos AA, Diego-Limpin PA, Farrokhi V, Coutermarsh BA, Stanton BA, Jensen T, Riordan JR, Wetmore D, Joseloff E, Yao X.

J Proteome Res. 2014 Nov 7;13(11):4676-85. doi: 10.1021/pr5006795. Epub 2014 Oct 3.

15.

Cigarette smoke (CS) and nicotine delay neutrophil spontaneous death via suppressing production of diphosphoinositol pentakisphosphate.

Xu Y, Li H, Bajrami B, Kwak H, Cao S, Liu P, Zhou J, Zhou Y, Zhu H, Ye K, Luo HR.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7726-31. doi: 10.1073/pnas.1302906110. Epub 2013 Apr 22.

16.

Rapid LC-MS drug metabolite profiling using bioreactor particles.

Zhao L, Bajrami B, Rusling JF.

Methods Mol Biol. 2013;987:129-34. doi: 10.1007/978-1-62703-321-3_11.

PMID:
23475673
17.

Reactive oxygen species-induced actin glutathionylation controls actin dynamics in neutrophils.

Sakai J, Li J, Subramanian KK, Mondal S, Bajrami B, Hattori H, Jia Y, Dickinson BC, Zhong J, Ye K, Chang CJ, Ho YS, Zhou J, Luo HR.

Immunity. 2012 Dec 14;37(6):1037-49. doi: 10.1016/j.immuni.2012.08.017. Epub 2012 Nov 15.

18.

Phosphoinositide lipid phosphatase SHIP1 and PTEN coordinate to regulate cell migration and adhesion.

Mondal S, Subramanian KK, Sakai J, Bajrami B, Luo HR.

Mol Biol Cell. 2012 Apr;23(7):1219-30. doi: 10.1091/mbc.E11-10-0889. Epub 2012 Feb 9.

19.

Free lipid A isolated from Porphyromonas gingivalis lipopolysaccharide is contaminated with phosphorylated dihydroceramide lipids: recovery in diseased dental samples.

Nichols FC, Bajrami B, Clark RB, Housley W, Yao X.

Infect Immun. 2012 Feb;80(2):860-74. doi: 10.1128/IAI.06180-11. Epub 2011 Dec 5.

20.

Phosphorylated dihydroceramides from common human bacteria are recovered in human tissues.

Nichols FC, Yao X, Bajrami B, Downes J, Finegold SM, Knee E, Gallagher JJ, Housley WJ, Clark RB.

PLoS One. 2011 Feb 11;6(2):e16771. doi: 10.1371/journal.pone.0016771.

21.

Ultrathroughput multiple reaction monitoring mass spectrometry.

Yao X, Bajrami B, Shi Y.

Anal Chem. 2010 Feb 1;82(3):794-7. doi: 10.1021/ac9026274.

PMID:
20063866
22.

Rapid LC-MS drug metabolite profiling using microsomal enzyme bioreactors in a parallel processing format.

Bajrami B, Zhao L, Schenkman JB, Rusling JF.

Anal Chem. 2009 Dec 15;81(24):9921-9. doi: 10.1021/ac9015853. Erratum in: Anal Chem. 2010 Jan 15;82(2):762.

23.

Site-preferential dissociation of peptides with active chemical modification for improving fragment ion detection.

Diego PA, Bajrami B, Jiang H, Shi Y, Gascon JA, Yao X.

Anal Chem. 2010 Jan 1;82(1):23-7. doi: 10.1021/ac902120k.

PMID:
19904916
24.

Shifting unoccupied spectral space in mass spectrum of peptide fragment ions.

Bajrami B, Shi Y, Lapierre P, Yao X.

J Am Soc Mass Spectrom. 2009 Nov;20(11):2124-34. doi: 10.1016/j.jasms.2009.07.005. Epub 2009 Jul 14.

25.

Passive and active fragment ion mass defect labeling: distinct proteomics potential of iodine-based reagents.

Shi Y, Bajrami B, Yao X.

Anal Chem. 2009 Aug 1;81(15):6438-48. doi: 10.1021/ac9008034.

PMID:
19572545
26.

Comparison of DNA-Reactive Metabolites from Nitrosamine and Styrene Using Voltammetric DNA/Microsomes Sensors.

Krishnan S, Bajrami B, Mani V, Pan S, Rusling JF.

Electroanalysis. 2009 May 1;21(9):1005-1013. Epub 2009 Mar 12.

27.

Microsome biocolloids for rapid drug metabolism and inhibition assessment by LC-MS.

Bajrami B, Krishnan S, Rusling JF.

Drug Metab Lett. 2008 Aug;2(3):158-62.

28.

Human cyt P450 mediated metabolic toxicity of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK) evaluated using electrochemiluminescent arrays.

Krishnan S, Hvastkovs EG, Bajrami B, Schenkman JB, Rusling JF.

Mol Biosyst. 2009 Feb;5(2):163-9. doi: 10.1039/b815910f. Epub 2008 Dec 12.

29.

Characterizing metabolic inhibition using electrochemical enzyme/DNA biosensors.

Hull DO, Bajrami B, Jansson I, Schenkman JB, Rusling JF.

Anal Chem. 2009 Jan 15;81(2):716-24. doi: 10.1021/ac802179s.

30.

Cyclophosphoramidate ion as mass defect marker for efficient detection of protein serine phosphorylation.

Shi Y, Bajrami B, Morton M, Yao X.

Anal Chem. 2008 Oct 1;80(19):7614-23. doi: 10.1021/ac801355u. Epub 2008 Sep 10.

PMID:
18781815
31.

Synergistic metabolic toxicity screening using microsome/DNA electrochemiluminescent arrays and nanoreactors.

Krishnan S, Hvastkovs EG, Bajrami B, Choudhary D, Schenkman JB, Rusling JF.

Anal Chem. 2008 Jul 15;80(14):5279-85. doi: 10.1021/ac800763r. Epub 2008 Jun 19.

32.

Enzyme-DNA biocolloids for DNA adduct and reactive metabolite detection by chromatography-mass spectrometry.

Bajrami B, Hvastkovs EG, Jensen GC, Schenkman JB, Rusling JF.

Anal Chem. 2008 Feb 15;80(4):922-32. doi: 10.1021/ac702025f. Epub 2008 Jan 25.

PMID:
18217727
33.

Electrochemical genotoxicity screening for arylamines bioactivated by N-acetyltransferase.

So M, Hvastkovs EG, Bajrami B, Schenkman JB, Rusling JF.

Anal Chem. 2008 Feb 15;80(4):1192-200. doi: 10.1021/ac701781y. Epub 2008 Jan 12.

PMID:
18189370
34.

Genotoxicity screening for N-nitroso compounds. Electrochemical and electrochemiluminescent detection of human enzyme-generated DNA damage from N-nitrosopyrrolidine.

Krishnan S, Hvastkovs EG, Bajrami B, Jansson I, Schenkman JB, Rusling JF.

Chem Commun (Camb). 2007 May 7;(17):1713-5. Epub 2007 Apr 3.

PMID:
17457417
35.

Electrochemiluminescent arrays for cytochrome P450-activated genotoxicity screening. DNA damage from benzo[a]pyrene metabolites.

Hvastkovs EG, So M, Krishnan S, Bajrami B, Tarun M, Jansson I, Schenkman JB, Rusling JF.

Anal Chem. 2007 Mar 1;79(5):1897-906. Epub 2007 Jan 30. Erratum in: Anal Chem. 2008 Mar 15;80(6):2272.

36.

Genotoxicity screening using biocatalyst/DNA films and capillary LC-MS/MS.

Tarun M, Bajrami B, Rusling JF.

Anal Chem. 2006 Jan 15;78(2):624-7.

PMID:
16408950

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