Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 210

1.

Author Correction: Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance.

Bokhari A, Essack M, Lafi FF, Andres-Barrao C, Jalal R, Alamoudi S, Razali R, Alzubaidy H, Shah KH, Siddique S, Bajic VB, Hirt H, Saad MM.

Sci Rep. 2020 Feb 14;10(1):3001. doi: 10.1038/s41598-020-58957-w.

2.

The X Files: "The Mystery of X Chromosome Instability in Alzheimer's Disease".

Bajic VP, Essack M, Zivkovic L, Stewart A, Zafirovic S, Bajic VB, Gojobori T, Isenovic E, Spremo-Potparevic B.

Front Genet. 2020 Jan 28;10:1368. doi: 10.3389/fgene.2019.01368. eCollection 2019. Review.

3.

Regulation of nitric oxide production in hypothyroidism.

Gluvic ZM, Obradovic MM, Sudar-Milovanovic EM, Zafirovic SS, Radak DJ, Essack MM, Bajic VB, Takashi G, Isenovic ER.

Biomed Pharmacother. 2020 Apr;124:109881. doi: 10.1016/j.biopha.2020.109881. Epub 2020 Jan 24. Review.

4.

Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs).

Othoum G, Prigent S, Derouiche A, Shi L, Bokhari A, Alamoudi S, Bougouffa S, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Lafi FF, Nielsen J, Bajic VB, Mijakovic I, Essack M.

Sci Rep. 2019 Dec 17;9(1):19254. doi: 10.1038/s41598-019-55726-2.

5.

Comparison Study of Computational Prediction Tools for Drug-Target Binding Affinities.

Thafar M, Raies AB, Albaradei S, Essack M, Bajic VB.

Front Chem. 2019 Nov 20;7:782. doi: 10.3389/fchem.2019.00782. eCollection 2019. Review.

6.

Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance.

Bokhari A, Essack M, Lafi FF, Andres-Barrao C, Jalal R, Alamoudi S, Razali R, Alzubaidy H, Shah KH, Siddique S, Bajic VB, Hirt H, Saad MM.

Sci Rep. 2019 Dec 3;9(1):18154. doi: 10.1038/s41598-019-54685-y. Erratum in: Sci Rep. 2020 Feb 14;10(1):3001.

7.

HbA1C as a marker of retrograde glycaemic control in diabetes patient with co-existed beta-thalassaemia: A case report and a literature review.

Gluvic Z, Obradovic M, Lackovic M, Samardzic V, Tica Jevtic J, Essack M, Bajic VB, Isenovic ER.

J Clin Pharm Ther. 2019 Nov 17. doi: 10.1111/jcpt.13073. [Epub ahead of print]

PMID:
31736110
8.

Antioxidant enzymes expression in lymphocytes of patients undergoing carotid endarterectomy.

Obradovic M, Zafirovic S, Essack M, Dimitrov J, Zivkovic L, Spremo-Potparevic B, Radak D, Bajic VB, Isenovic ER.

Med Hypotheses. 2020 Jan;134:109419. doi: 10.1016/j.mehy.2019.109419. Epub 2019 Oct 3.

9.

Proteome-level assessment of origin, prevalence and function of Leucine-Aspartic Acid (LD) motifs.

Alam T, Alazmi M, Naser R, Huser F, Momin AA, Astro V, Hong S, Walkiewicz KW, Canlas CG, Huser R, Ali AJ, Merzaban J, Adamo A, Jaremko M, Jaremko Ł, Bajic VB, Gao X, Arold ST.

Bioinformatics. 2019 Oct 4. pii: btz703. doi: 10.1093/bioinformatics/btz703. [Epub ahead of print]

PMID:
31584626
10.

Redox control of vascular biology.

Obradovic M, Essack M, Zafirovic S, Sudar-Milovanovic E, Bajic VP, Van Neste C, Trpkovic A, Stanimirovic J, Bajic VB, Isenovic ER.

Biofactors. 2019 Sep 4. doi: 10.1002/biof.1559. [Epub ahead of print] Review.

PMID:
31483915
11.

Mining biosynthetic gene clusters in Virgibacillus genomes.

Othoum G, Bougouffa S, Bokhari A, Lafi FF, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Essack M.

BMC Genomics. 2019 Sep 3;20(1):696. doi: 10.1186/s12864-019-6065-7.

12.

Literature-Based Enrichment Insights into Redox Control of Vascular Biology.

Essack M, Salhi A, Stanimirovic J, Tifratene F, Bin Raies A, Hungler A, Uludag M, Van Neste C, Trpkovic A, Bajic VP, Bajic VB, Isenovic ER.

Oxid Med Cell Longev. 2019 May 16;2019:1769437. doi: 10.1155/2019/1769437. eCollection 2019. Review.

13.

Mining the deep Red-Sea brine pool microbial community for anticancer therapeutics.

Esau L, Zhang G, Sagar S, Stingl U, Bajic VB, Kaur M.

BMC Complement Altern Med. 2019 Jun 20;19(1):142. doi: 10.1186/s12906-019-2554-0.

14.

Glutathione "Redox Homeostasis" and Its Relation to Cardiovascular Disease.

Bajic VP, Van Neste C, Obradovic M, Zafirovic S, Radak D, Bajic VB, Essack M, Isenovic ER.

Oxid Med Cell Longev. 2019 May 9;2019:5028181. doi: 10.1155/2019/5028181. eCollection 2019. Review.

15.

Hybrid model for efficient prediction of poly(A) signals in human genomic DNA.

Albalawi F, Chahid A, Guo X, Albaradei S, Magana-Mora A, Jankovic BR, Uludag M, Van Neste C, Essack M, Laleg-Kirati TM, Bajic VB.

Methods. 2019 Aug 15;166:31-39. doi: 10.1016/j.ymeth.2019.04.001. Epub 2019 Apr 13.

16.

LncBook: a curated knowledgebase of human long non-coding RNAs.

Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z.

Nucleic Acids Res. 2019 Mar 18;47(5):2699. doi: 10.1093/nar/gkz073. No abstract available.

17.

CpG traffic lights are markers of regulatory regions in human genome.

Lioznova AV, Khamis AM, Artemov AV, Besedina E, Ramensky V, Bajic VB, Kulakovskiy IV, Medvedeva YA.

BMC Genomics. 2019 Feb 1;20(1):102. doi: 10.1186/s12864-018-5387-1.

18.

Marine biofilms constitute a bank of hidden microbial diversity and functional potential.

Zhang W, Ding W, Li YX, Tam C, Bougouffa S, Wang R, Pei B, Chiang H, Leung P, Lu Y, Sun J, Fu H, Bajic VB, Liu H, Webster NS, Qian PY.

Nat Commun. 2019 Jan 31;10(1):517. doi: 10.1038/s41467-019-08463-z.

19.

Uncoupled Quorum Sensing Modulates the Interplay of Virulence and Resistance in a Multidrug-Resistant Clinical Pseudomonas aeruginosa Isolate Belonging to the MLST550 Clonal Complex.

Cao H, Xia T, Li Y, Xu Z, Bougouffa S, Lo YK, Bajic VB, Luo H, Woo PCY, Yan A.

Antimicrob Agents Chemother. 2019 Mar 27;63(4). pii: e01944-18. doi: 10.1128/AAC.01944-18. Print 2019 Apr.

20.

Characterization and identification of long non-coding RNAs based on feature relationship.

Wang G, Yin H, Li B, Yu C, Wang F, Xu X, Cao J, Bao Y, Wang L, Abbasi AA, Bajic VB, Ma L, Zhang Z.

Bioinformatics. 2019 Sep 1;35(17):2949-2956. doi: 10.1093/bioinformatics/btz008.

PMID:
30649200
21.

TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers.

Kleftogiannis D, Ashoor H, Bajic VB.

Genomics Proteomics Bioinformatics. 2018 Oct;16(5):332-341. doi: 10.1016/j.gpb.2018.05.003. Epub 2018 Dec 19.

22.

The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance.

Razali R, Bougouffa S, Morton MJL, Lightfoot DJ, Alam I, Essack M, Arold ST, Kamau AA, Schmöckel SM, Pailles Y, Shahid M, Michell CT, Al-Babili S, Ho YS, Tester M, Bajic VB, Negrão S.

Front Plant Sci. 2018 Oct 4;9:1402. doi: 10.3389/fpls.2018.01402. eCollection 2018.

23.

LncBook: a curated knowledgebase of human long non-coding RNAs.

Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z.

Nucleic Acids Res. 2019 Jan 8;47(D1):D128-D134. doi: 10.1093/nar/gky960. Erratum in: Nucleic Acids Res. 2019 Mar 18;47(5):2699.

24.

Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites.

Rehman ZU, Alam I, Kamau AA, Bajic VB, Leiknes T.

Biotechnol Rep (Amst). 2018 Aug 24;19:e00278. doi: 10.1016/j.btre.2018.e00278. eCollection 2018 Sep.

25.

DES-Mutation: System for Exploring Links of Mutations and Diseases.

Kordopati V, Salhi A, Razali R, Radovanovic A, Tifratene F, Uludag M, Li Y, Bokhari A, AlSaieedi A, Bin Raies A, Van Neste C, Essack M, Bajic VB.

Sci Rep. 2018 Sep 6;8(1):13359. doi: 10.1038/s41598-018-31439-w.

26.

DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions.

Kalkatawi M, Magana-Mora A, Jankovic B, Bajic VB.

Bioinformatics. 2019 Apr 1;35(7):1125-1132. doi: 10.1093/bioinformatics/bty752.

27.

BioPS: System for screening and assessment of biofuel-production potential of cyanobacteria.

Motwalli O, Essack M, Salhi A, Hanks J, Mijakovic I, Bajic VB.

PLoS One. 2018 Aug 10;13(8):e0202002. doi: 10.1371/journal.pone.0202002. eCollection 2018.

28.

DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches.

Olayan RS, Ashoor H, Bajic VB.

Bioinformatics. 2018 Nov 1;34(21):3779. doi: 10.1093/bioinformatics/bty417. No abstract available.

29.

DPubChem: a web tool for QSAR modeling and high-throughput virtual screening.

Soufan O, Ba-Alawi W, Magana-Mora A, Essack M, Bajic VB.

Sci Rep. 2018 Jun 14;8(1):9110. doi: 10.1038/s41598-018-27495-x.

30.

In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters.

Othoum G, Bougouffa S, Razali R, Bokhari A, Alamoudi S, Antunes A, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Lafi FF, Essack M.

BMC Genomics. 2018 May 22;19(1):382. doi: 10.1186/s12864-018-4796-5.

31.

In silico toxicology: comprehensive benchmarking of multi-label classification methods applied to chemical toxicity data.

Raies AB, Bajic VB.

Wiley Interdiscip Rev Comput Mol Sci. 2018 May-Jun;8(3):e1352. doi: 10.1002/wcms.1352. Epub 2017 Dec 4. Review.

32.

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

Roy S, Schmeier S, Kaczkowski B, Arner E, Alam T, Ozturk M, Tamgue O, Parihar SP, Kawaji H, Itoh M, Lassmann T, Carninci P, Hayashizaki Y, Forrest ARR, Guler R, Bajic VB, Brombacher F, Suzuki H.

Sci Rep. 2018 Apr 30;8(1):6758. doi: 10.1038/s41598-018-24509-6.

33.

Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean's Deepest Point.

Zhang W, Tian RM, Sun J, Bougouffa S, Ding W, Cai L, Lan Y, Tong H, Li Y, Jamieson AJ, Bajic VB, Drazen JC, Bartlett D, Qian PY.

mSystems. 2018 Apr 10;3(3). pii: e00009-18. doi: 10.1128/mSystems.00009-18. eCollection 2018 May-Jun.

34.

A novel method for improved accuracy of transcription factor binding site prediction.

Khamis AM, Motwalli O, Oliva R, Jankovic BR, Medvedeva YA, Ashoor H, Essack M, Gao X, Bajic VB.

Nucleic Acids Res. 2018 Jul 6;46(12):e72. doi: 10.1093/nar/gky237.

35.

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

Baillie JK, Bretherick A, Haley CS, Clohisey S, Gray A, Neyton LPA, Barrett J, Stahl EA, Tenesa A, Andersson R, Brown JB, Faulkner GJ, Lizio M, Schaefer U, Daub C, Itoh M, Kondo N, Lassmann T, Kawai J; IIBDGC Consortium, Mole D, Bajic VB, Heutink P, Rehli M, Kawaji H, Sandelin A, Suzuki H, Satsangi J, Wells CA, Hacohen N, Freeman TC, Hayashizaki Y, Carninci P, Forrest ARR, Hume DA.

PLoS Comput Biol. 2018 Mar 1;14(3):e1005934. doi: 10.1371/journal.pcbi.1005934. eCollection 2018 Mar.

36.

Draft Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Enteritidis Strains Implicated in Infections of Avian and Human Hosts.

An R, Lin P, Bougouffa S, Essack M, Boxrud D, Bajic VB, Vidovic S.

Genome Announc. 2018 Jan 25;6(4). pii: e01550-17. doi: 10.1128/genomeA.01550-17.

37.

DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches.

Olayan RS, Ashoor H, Bajic VB.

Bioinformatics. 2018 Apr 1;34(7):1164-1173. doi: 10.1093/bioinformatics/btx731. Erratum in: Bioinformatics. 2018 Nov 1;34(21):3779.

38.

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium.

Andrés-Barrao C, Lafi FF, Alam I, de Zélicourt A, Eida AA, Bokhari A, Alzubaidy H, Bajic VB, Hirt H, Saad MM.

Front Microbiol. 2017 Oct 20;8:2023. doi: 10.3389/fmicb.2017.02023. eCollection 2017.

39.

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.

Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ.

Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106.

40.

Omni-PolyA: a method and tool for accurate recognition of Poly(A) signals in human genomic DNA.

Magana-Mora A, Kalkatawi M, Bajic VB.

BMC Genomics. 2017 Aug 15;18(1):620. doi: 10.1186/s12864-017-4033-7.

41.

DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species.

Salhi A, Negrão S, Essack M, Morton MJL, Bougouffa S, Razali R, Radovanovic A, Marchand B, Kulmanov M, Hoehndorf R, Tester M, Bajic VB.

Sci Rep. 2017 Jul 20;7(1):5968. doi: 10.1038/s41598-017-05448-0.

42.

Genomic characterization of two novel SAR11 isolates from the Red Sea, including the first strain of the SAR11 Ib clade.

Jimenez-Infante F, Ngugi DK, Vinu M, Blom J, Alam I, Bajic VB, Stingl U.

FEMS Microbiol Ecol. 2017 Jul 1;93(7). doi: 10.1093/femsec/fix083.

PMID:
28645159
43.

OmniGA: Optimized Omnivariate Decision Trees for Generalizable Classification Models.

Magana-Mora A, Bajic VB.

Sci Rep. 2017 Jun 20;7(1):3898. doi: 10.1038/s41598-017-04281-9.

44.

Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity.

Nielsen J, Archer J, Essack M, Bajic VB, Gojobori T, Mijakovic I.

Appl Microbiol Biotechnol. 2017 Jun;101(12):4837-4851. doi: 10.1007/s00253-017-8310-9. Epub 2017 May 20. Review.

45.

Semantic prioritization of novel causative genomic variants.

Boudellioua I, Mahamad Razali RB, Kulmanov M, Hashish Y, Bajic VB, Goncalves-Serra E, Schoenmakers N, Gkoutos GV, Schofield PN, Hoehndorf R.

PLoS Comput Biol. 2017 Apr 17;13(4):e1005500. doi: 10.1371/journal.pcbi.1005500. eCollection 2017 Apr.

46.

DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining.

Salhi A, Essack M, Alam T, Bajic VP, Ma L, Radovanovic A, Marchand B, Schmeier S, Zhang Z, Bajic VB.

RNA Biol. 2017 Jul 3;14(7):963-971. doi: 10.1080/15476286.2017.1312243. Epub 2017 Apr 7.

47.

Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Acinetobacter radioresistens Strain SA188 Isolated from the Desert Plant Indigofera argentea.

Lafi FF, Alam I, Bisseling T, Geurts R, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Mar 2;5(9). pii: e01708-16. doi: 10.1128/genomeA.01708-16.

48.

Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium.

Lafi FF, Alam I, Geurts R, Bisseling T, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Mar 2;5(9). pii: e01707-16. doi: 10.1128/genomeA.01707-16.

49.

Draft Genome Sequence of Enterobacter sp. Sa187, an Endophytic Bacterium Isolated from the Desert Plant Indigofera argentea.

Lafi FF, Alam I, Geurts R, Bisseling T, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Feb 16;5(7). pii: e01638-16. doi: 10.1128/genomeA.01638-16.

50.

Draft Genome Sequence of Plant Growth-Promoting Micrococcus luteus Strain K39 Isolated from Cyperus conglomeratus in Saudi Arabia.

Lafi FF, Ramirez-Prado JS, Alam I, Bajic VB, Hirt H, Saad MM.

Genome Announc. 2017 Jan 26;5(4). pii: e01520-16. doi: 10.1128/genomeA.01520-16.

Supplemental Content

Loading ...
Support Center