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Clinical Use of Precision Oncology Decision Support.

Johnson A, Khotskaya YB, Brusco L, Zeng J, Holla V, Bailey AM, Litzenburger BC, Sanchez N, Shufean MA, Piha-Paul S, Subbiah V, Hong D, Routbort M, Broaddus R, Mills Shaw KR, Mills GB, Mendelsohn J, Meric-Bernstam F.

JCO Precis Oncol. 2017;2017. doi: 10.1200/PO.17.00036. Epub 2017 Sep 13.


Endotoxin rapidly desensitizes the gonads to kisspeptin-induced luteinizing hormone release in male Siberian hamsters (Phodopus sungorus).

Long KLP, Bailey AM, Greives TJ, Legan SJ, Demas GE.

J Exp Biol. 2018 Oct 8. pii: jeb.185504. doi: 10.1242/jeb.185504. [Epub ahead of print]


Strobilurin biosynthesis in Basidiomycete fungi.

Nofiani R, de Mattos-Shipley K, Lebe KE, Han LC, Iqbal Z, Bailey AM, Willis CL, Simpson TJ, Cox RJ.

Nat Commun. 2018 Sep 26;9(1):3940. doi: 10.1038/s41467-018-06202-4.


Exploring the Genetic Regulation of Asexual Sporulation in Zymoseptoria tritici.

Tiley AMM, Foster GD, Bailey AM.

Front Microbiol. 2018 Aug 14;9:1859. doi: 10.3389/fmicb.2018.01859. eCollection 2018.


Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.

Quigley DA, Dang HX, Zhao SG, Lloyd P, Aggarwal R, Alumkal JJ, Foye A, Kothari V, Perry MD, Bailey AM, Playdle D, Barnard TJ, Zhang L, Zhang J, Youngren JF, Cieslik MP, Parolia A, Beer TM, Thomas G, Chi KN, Gleave M, Lack NA, Zoubeidi A, Reiter RE, Rettig MB, Witte O, Ryan CJ, Fong L, Kim W, Friedlander T, Chou J, Li H, Das R, Li H, Moussavi-Baygi R, Goodarzi H, Gilbert LA, Lara PN Jr, Evans CP, Goldstein TC, Stuart JM, Tomlins SA, Spratt DE, Cheetham RK, Cheng DT, Farh K, Gehring JS, Hakenberg J, Liao A, Febbo PG, Shon J, Sickler B, Batzoglou S, Knudsen KE, He HH, Huang J, Wyatt AW, Dehm SM, Ashworth A, Chinnaiyan AM, Maher CA, Small EJ, Feng FY.

Cell. 2018 Jul 26;174(3):758-769.e9. doi: 10.1016/j.cell.2018.06.039. Epub 2018 Jul 19.


The cycloaspeptides: uncovering a new model for methylated nonribosomal peptide biosynthesis.

de Mattos-Shipley KMJ, Greco C, Heard DM, Hough G, Mulholland NP, Vincent JL, Micklefield J, Simpson TJ, Willis CL, Cox RJ, Bailey AM.

Chem Sci. 2018 Apr 10;9(17):4109-4117. doi: 10.1039/c8sc00717a. eCollection 2018 May 7.


Untying the gordion knot of targeting MET in cancer.

Raghav K, Bailey AM, Loree JM, Kopetz S, Holla V, Yap TA, Wang F, Chen K, Salgia R, Hong D.

Cancer Treat Rev. 2018 May;66:95-103. doi: 10.1016/j.ctrv.2018.04.008. Epub 2018 Apr 26. Review.


Molecular Landscape of ERBB2/ERBB3 Mutated Colorectal Cancer.

Loree JM, Bailey AM, Johnson AM, Yu Y, Wu W, Bristow CA, Davis JS, Shaw KR, Broaddus R, Banks KC, Lanman RB, Meric-Bernstam F, Overman MJ, Kopetz S, Raghav K.

J Natl Cancer Inst. 2018 Apr 27. doi: 10.1093/jnci/djy067. [Epub ahead of print]


Precision Oncology Decision Support: Current Approaches and Strategies for the Future.

Kurnit KC, Dumbrava EEI, Litzenburger B, Khotskaya YB, Johnson AM, Yap TA, Rodon J, Zeng J, Shufean MA, Bailey AM, Sánchez NS, Holla V, Mendelsohn J, Shaw KM, Bernstam EV, Mills GB, Meric-Bernstam F.

Clin Cancer Res. 2018 Jun 15;24(12):2719-2731. doi: 10.1158/1078-0432.CCR-17-2494. Epub 2018 Feb 2. Review.


A guide to the contained use of plant virus infectious clones.

Brewer HC, Hird DL, Bailey AM, Seal SE, Foster GD.

Plant Biotechnol J. 2018 Apr;16(4):832-843. doi: 10.1111/pbi.12876. Epub 2018 Feb 6. Review.


Biological characterization of a novel in vitro cell irradiator.

Fowler TL, Fisher MM, Bailey AM, Bednarz BP, Kimple RJ.

PLoS One. 2017 Dec 12;12(12):e0189494. doi: 10.1371/journal.pone.0189494. eCollection 2017.


Are physician assistant and patient airway assessments reliable compared to anesthesiologist assessments in detecting difficult airways in general surgical patients?

Payne E, Ragheb J, Jewell ES, Huang BP, Bailey AM, Fritsch LM, Engoren M.

Perioper Med (Lond). 2017 Nov 22;6:20. doi: 10.1186/s13741-017-0077-0. eCollection 2017.


Heterologous expression reveals the biosynthesis of the antibiotic pleuromutilin and generates bioactive semi-synthetic derivatives.

Alberti F, Khairudin K, Venegas ER, Davies JA, Hayes PM, Willis CL, Bailey AM, Foster GD.

Nat Commun. 2017 Nov 28;8(1):1831. doi: 10.1038/s41467-017-01659-1.


Physician interpretation of genomic test results and treatment selection.

Brusco LL, Wathoo C, Mills Shaw KR, Holla VR, Bailey AM, Johnson AM, Khotskaya YB, Litzenburger BC, Sanchez NS, Zeng J, Bernstam EV, Eng C, Kee BK, Amaria RN, Routbort MJ, Mills GB, Mendelsohn J, Meric-Bernstam F.

Cancer. 2018 Mar 1;124(5):966-972. doi: 10.1002/cncr.31112. Epub 2017 Nov 22.


Stereochemistry and biological activity of chlorinated lipids: a study of danicalipin A and selected diastereomers.

Boshkow J, Fischer S, Bailey AM, Wolfrum S, Carreira EM.

Chem Sci. 2017 Oct 1;8(10):6904-6910. doi: 10.1039/c7sc03124f. Epub 2017 Aug 9.


"Personalized Cancer Therapy": A Publicly Available Precision Oncology Resource.

Kurnit KC, Bailey AM, Zeng J, Johnson AM, Shufean MA, Brusco L, Litzenburger BC, Sánchez NS, Khotskaya YB, Holla V, Simpson A, Mills GB, Mendelsohn J, Bernstam E, Shaw K, Meric-Bernstam F.

Cancer Res. 2017 Nov 1;77(21):e123-e126. doi: 10.1158/0008-5472.CAN-17-0341.


Changes in Anxiety and Depression Are Mediated by Changes in Pain Severity in Patients Undergoing Lower-Extremity Total Joint Arthroplasty.

Hassett AL, Marshall E, Bailey AM, Moser S, Clauw DJ, Hooten WM, Urquhart A, Brummett CM.

Reg Anesth Pain Med. 2018 Jan;43(1):14-18. doi: 10.1097/AAP.0000000000000682.


A silver bullet in a golden age of functional genomics: the impact of Agrobacterium-mediated transformation of fungi.

Idnurm A, Bailey AM, Cairns TC, Elliott CE, Foster GD, Ianiri G, Jeon J.

Fungal Biol Biotechnol. 2017 Sep 26;4:6. doi: 10.1186/s40694-017-0035-0. eCollection 2017. Review.


Cassava brown streak disease: historical timeline, current knowledge and future prospects.

Tomlinson KR, Bailey AM, Alicai T, Seal S, Foster GD.

Mol Plant Pathol. 2018 May;19(5):1282-1294. doi: 10.1111/mpp.12613. Epub 2017 Dec 28. Review.


Improved vectors for Agrobacterium mediated genetic manipulation of Hypholoma spp. and other homobasidiomycetes.

Al-Salihi SAA, Scott TA, Bailey AM, Foster GD.

J Microbiol Methods. 2017 Nov;142:4-9. doi: 10.1016/j.mimet.2017.08.014. Epub 2017 Aug 24.


Update on Sepsis Treatment in the Emergency Department.

Weant KA, Bailey AM.

Adv Emerg Nurs J. 2017 Jul/Sep;39(3):176-183. doi: 10.1097/TME.0000000000000158.


Genetic and chemical characterisation of the cornexistin pathway provides further insight into maleidride biosynthesis.

Williams K, Szwalbe AJ, Dickson C, Desson TR, Mulholland NP, Vincent JL, Clough JM, Bailey AM, Butts CP, Willis CL, Simpson TJ, Cox RJ.

Chem Commun (Camb). 2017 Jul 11;53(56):7965-7968. doi: 10.1039/c7cc03303f.


Insights into the Classical Genetics of Clitopilus passeckerianus - the Pleuromutilin Producing Mushroom.

de Mattos-Shipley KMJ, Foster GD, Bailey AM.

Front Microbiol. 2017 Jun 9;8:1056. doi: 10.3389/fmicb.2017.01056. eCollection 2017.


Effects of exogenous leptin on seasonal reproductive responses to interacting environmental cues in female Siberian hamsters.

Bailey AM, Legan SJ, Meretsky VJ, Demas GE.

Gen Comp Endocrinol. 2017 Sep 1;250:95-103. doi: 10.1016/j.ygcen.2017.06.004. Epub 2017 Jun 12.


Antiemetic Use in the Emergency Department.

Weant KA, Bailey AM, Baum RA, Justice SB, Calhoun CD.

Adv Emerg Nurs J. 2017 Apr/Jun;39(2):97-105. doi: 10.1097/TME.0000000000000141.


Draft Genome Sequence of the Coprinoid Mushroom Coprinopsis strossmayeri.

Banks AM, Barker GL, Bailey AM, Foster GD.

Genome Announc. 2017 Apr 6;5(14). pii: e00044-17. doi: 10.1128/genomeA.00044-17.


Review of Intranasally Administered Medications for Use in the Emergency Department.

Bailey AM, Baum RA, Horn K, Lewis T, Morizio K, Schultz A, Weant K, Justice SN.

J Emerg Med. 2017 Jul;53(1):38-48. doi: 10.1016/j.jemermed.2017.01.020. Epub 2017 Mar 1. Review.


Delayed hematologic toxicity following rattlesnake envenomation unresponsive to crotalidae polyvalent antivenom.

Bailey AM, Justice S, Davis GA, Weant K.

Am J Emerg Med. 2017 Jul;35(7):1038.e1-1038.e2. doi: 10.1016/j.ajem.2017.02.045. Epub 2017 Feb 27.


Chemotherapy in the Emergency Department? There Is a Role for That: Methotrexate for Ectopic Pregnancy.

Weant KA, Bailey AM, Baum RA, Justice SB, Calhoun CD.

Adv Emerg Nurs J. 2017 Jan/Mar;39(1):18-25. doi: 10.1097/TME.0000000000000137. Review.


Characterization and Management of Patients with Heroin versus Nonheroin Opioid Overdoses: Experience at an Academic Medical Center.

Morizio KM, Baum RA, Dugan A, Martin JE, Bailey AM.

Pharmacotherapy. 2017 Jul;37(7):781-790. doi: 10.1002/phar.1902. Epub 2017 Feb 27.


The good, the bad and the tasty: The many roles of mushrooms.

de Mattos-Shipley KM, Ford KL, Alberti F, Banks AM, Bailey AM, Foster GD.

Stud Mycol. 2016 Sep;85:125-157. doi: 10.1016/j.simyco.2016.11.002. Epub 2016 Nov 11.


ALK: a tyrosine kinase target for cancer therapy.

Holla VR, Elamin YY, Bailey AM, Johnson AM, Litzenburger BC, Khotskaya YB, Sanchez NS, Zeng J, Shufean MA, Shaw KR, Mendelsohn J, Mills GB, Meric-Bernstam F, Simon GR.

Cold Spring Harb Mol Case Stud. 2017 Jan;3(1):a001115. doi: 10.1101/mcs.a001115. Review.


Natural products from filamentous fungi and production by heterologous expression.

Alberti F, Foster GD, Bailey AM.

Appl Microbiol Biotechnol. 2017 Jan;101(2):493-500. doi: 10.1007/s00253-016-8034-2. Epub 2016 Dec 13. Review.


Identification of Rate-Limiting Steps in the Provision of Thrombolytics for Acute Ischemic Stroke.

Metts EL, Bailey AM, Weant KA, Justice SB.

J Pharm Pract. 2017 Dec;30(6):606-611. doi: 10.1177/0897190016674408. Epub 2016 Nov 10.


A Review on the Reversal of the Old and New Anticoagulants.

Bailey AM, Blackburn MC, Crowley JM, Horn KS, Schultz AE, Justice SB.

Adv Emerg Nurs J. 2016 Oct/Dec;38(4):279-294. Review.


Food as a supplementary cue triggers seasonal changes in aggression, but not reproduction, in Siberian hamsters.

Bailey AM, Rendon NM, O'Malley KJ, Demas GE.

Physiol Behav. 2016 Dec 1;167:298-308. doi: 10.1016/j.physbeh.2016.09.023. Epub 2016 Sep 28.


Analysis of Poyang Lake water balance and its indication of river-lake interaction.

Zhang Z, Huang Y, Xu CY, Chen X, Moss EM, Jin Q, Bailey AM.

Springerplus. 2016 Sep 13;5(1):1555. doi: 10.1186/s40064-016-3239-5. eCollection 2016.


Illuminating the Undergraduate Behavioral Neuroscience Laboratory: A Guide for the in vivo Application of Optogenetics in Mammalian Model Organisms.

Roberts BM, Jarrin SE, Mathur BN, Bailey AM.

J Undergrad Neurosci Educ. 2016 Apr 15;14(2):A111-6. eCollection 2016 Spring.


A native promoter and inclusion of an intron is necessary for efficient expression of GFP or mRFP in Armillaria mellea.

Ford KL, Baumgartner K, Henricot B, Bailey AM, Foster GD.

Sci Rep. 2016 Jul 7;6:29226. doi: 10.1038/srep29226.


Identification and manipulation of the pleuromutilin gene cluster from Clitopilus passeckerianus for increased rapid antibiotic production.

Bailey AM, Alberti F, Kilaru S, Collins CM, de Mattos-Shipley K, Hartley AJ, Hayes P, Griffin A, Lazarus CM, Cox RJ, Willis CL, O'Dwyer K, Spence DW, Foster GD.

Sci Rep. 2016 May 4;6:25202. doi: 10.1038/srep25202.


Complements Are Not Always a Good Thing: Novel Therapies for Angioedema.

Bailey AM, Reed BS, Weant KA, Justice SB.

Adv Emerg Nurs J. 2016 Apr-Jun;38(2):93-108. doi: 10.1097/TME.0000000000000097. Review.


Functional analysis of Agaricus bisporus serine proteinase 1 reveals roles in utilization of humic rich substrates and adaptation to the leaf-litter ecological niche.

Heneghan MN, Burns C, Costa AM, Burton KS, Challen MP, Bailey AM, Foster GD.

Environ Microbiol. 2016 Dec;18(12):4687-4696. doi: 10.1111/1462-2920.13350. Epub 2016 Jun 7.


Treatment of Diabetic Ketoacidosis With Intravenous U-500 Insulin in a Patient With Rabson-Mendenhall Syndrome: A Case Report.

Moore MM, Bailey AM, Flannery AH, Baum RA.

J Pharm Pract. 2017 Aug;30(4):468-475. doi: 10.1177/0897190016645036. Epub 2016 Apr 24.


Automated identification of molecular effects of drugs (AIMED).

Fathiamini S, Johnson AM, Zeng J, Araya A, Holla V, Bailey AM, Litzenburger BC, Sanchez NS, Khotskaya Y, Xu H, Meric-Bernstam F, Bernstam EV, Cohen T.

J Am Med Inform Assoc. 2016 Jul;23(4):758-65. doi: 10.1093/jamia/ocw030. Epub 2016 Apr 23.


Heterologous Production of Fungal Maleidrides Reveals the Cryptic Cyclization Involved in their Biosynthesis.

Williams K, Szwalbe AJ, Mulholland NP, Vincent JL, Bailey AM, Willis CL, Simpson TJ, Cox RJ.

Angew Chem Int Ed Engl. 2016 Jun 1;55(23):6784-8. doi: 10.1002/anie.201511882. Epub 2016 Apr 21.


Four-factor prothrombin complex concentrate-associated hypotension.

Wong PJ, Bailey AM, Baum RA.

Am J Emerg Med. 2016 Oct;34(10):2059.e1-2059.e2. doi: 10.1016/j.ajem.2016.03.041. Epub 2016 Mar 17. No abstract available.


Identification of genes encoding squalestatin S1 biosynthesis and in vitro production of new squalestatin analogues.

Bonsch B, Belt V, Bartel C, Duensing N, Koziol M, Lazarus CM, Bailey AM, Simpson TJ, Cox RJ.

Chem Commun (Camb). 2016 May 21;52(41):6777-80. doi: 10.1039/c6cc02130a. Epub 2016 Apr 8.


Extracting genetic alteration information for personalized cancer therapy from

Xu J, Lee HJ, Zeng J, Wu Y, Zhang Y, Huang LC, Johnson A, Holla V, Bailey AM, Cohen T, Meric-Bernstam F, Bernstam EV, Xu H.

J Am Med Inform Assoc. 2016 Jul;23(4):750-7. doi: 10.1093/jamia/ocw009. Epub 2016 Mar 24.


Calcium- and Phosphorus-Supplemented Diet Increases Bone Mass after Short-Term Exercise and Increases Bone Mass and Structural Strength after Long-Term Exercise in Adult Mice.

Friedman MA, Bailey AM, Rondon MJ, McNerny EM, Sahar ND, Kohn DH.

PLoS One. 2016 Mar 23;11(3):e0151995. doi: 10.1371/journal.pone.0151995. eCollection 2016.


High-Dose Adenosine for Treatment of Refractory Supraventricular Tachycardia in an Emergency Department of an Academic Medical Center: A Case Report and Literature Review.

Bailey AM, Baum RA, Rose J, Humphries RL.

J Emerg Med. 2016 Mar;50(3):477-81. doi: 10.1016/j.jemermed.2015.11.012. Epub 2016 Jan 23. Review.


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