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Items: 1 to 50 of 178

1.

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.

Lock A, Rutherford K, Harris MA, Hayles J, Oliver SG, Bähler J, Wood V.

Nucleic Acids Res. 2019 Jan 8;47(D1):D821-D827. doi: 10.1093/nar/gky961.

2.

Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells.

Ellis DA, Mustonen V, Rodríguez-López M, Rallis C, Malecki M, Jeffares DC, Bähler J.

Genetics. 2018 Oct;210(2):733-744. doi: 10.1534/genetics.118.301262. Epub 2018 Aug 2.

3.

Long noncoding RNA repertoire and targeting by nuclear exosome, cytoplasmic exonuclease, and RNAi in fission yeast.

Atkinson SR, Marguerat S, Bitton DA, Rodríguez-López M, Rallis C, Lemay JF, Cotobal C, Malecki M, Smialowski P, Mata J, Korber P, Bachand F, Bähler J.

RNA. 2018 Sep;24(9):1195-1213. doi: 10.1261/rna.065524.118. Epub 2018 Jun 18.

4.

General amino acid control in fission yeast is regulated by a nonconserved transcription factor, with functions analogous to Gcn4/Atf4.

Duncan CDS, Rodríguez-López M, Ruis P, Bähler J, Mata J.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):E1829-E1838. doi: 10.1073/pnas.1713991115. Epub 2018 Feb 5.

5.

RNA metabolism is the primary target of formamide in vivo.

Hoyos-Manchado R, Reyes-Martín F, Rallis C, Gamero-Estévez E, Rodríguez-Gómez P, Quintero-Blanco J, Bähler J, Jiménez J, Tallada VA.

Sci Rep. 2017 Nov 21;7(1):15895. doi: 10.1038/s41598-017-16291-8.

7.

A CRISPR/Cas9-based method and primer design tool for seamless genome editing in fission yeast.

Rodríguez-López M, Cotobal C, Fernández-Sánchez O, Borbarán Bravo N, Oktriani R, Abendroth H, Uka D, Hoti M, Wang J, Zaratiegui M, Bähler J.

Wellcome Open Res. 2017 May 5;1:19. doi: 10.12688/wellcomeopenres.10038.3. eCollection 2016.

8.

Schizosaccharomyces pombe Polysome Profile Analysis and RNA Purification.

Wolf DA, Bähler J, Wise JA.

Cold Spring Harb Protoc. 2017 Apr 3;2017(4):pdb.prot091637. doi: 10.1101/pdb.prot091637.

PMID:
28373490
9.

Preparation of Total RNA from Fission Yeast.

Bähler J, Wise JA.

Cold Spring Harb Protoc. 2017 Apr 3;2017(4):pdb.prot091629. doi: 10.1101/pdb.prot091629.

PMID:
28373489
10.
11.

The copper transport-associated protein Ctr4 can form prion-like epigenetic determinants in Schizosaccharomyces pombe.

Sideri T, Yashiroda Y, Ellis DA, Rodríguez-López M, Yoshida M, Tuite MF, Bähler J.

Microb Cell. 2017 Jan;4(1):16-28. doi: 10.15698/mic2017.01.552.

12.

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.

Jeffares DC, Jolly C, Hoti M, Speed D, Shaw L, Rallis C, Balloux F, Dessimoz C, Bähler J, Sedlazeck FJ.

Nat Commun. 2017 Jan 24;8:14061. doi: 10.1038/ncomms14061.

13.

Identifying genes required for respiratory growth of fission yeast.

Malecki M, Bähler J.

Wellcome Open Res. 2016 Nov 15;1:12. doi: 10.12688/wellcomeopenres.9992.1. eCollection 2016.

14.

Functional and regulatory profiling of energy metabolism in fission yeast.

Malecki M, Bitton DA, Rodríguez-López M, Rallis C, Calavia NG, Smith GC, Bähler J.

Genome Biol. 2016 Nov 25;17(1):240.

15.

Gene dosis and the timing of mitosis.

Tallada VA, Bähler J.

Cell Cycle. 2016 Nov 16;15(22):3022-3023. No abstract available.

16.

CSL protein regulates transcription of genes required to prevent catastrophic mitosis in fission yeast.

Převorovský M, Oravcová M, Zach R, Jordáková A, Bähler J, Půta F, Folk P.

Cell Cycle. 2016 Nov 16;15(22):3082-3093. Epub 2016 Sep 29.

17.

Spotsizer: High-throughput quantitative analysis of microbial growth.

Bischof L, Převorovský M, Rallis C, Jeffares DC, Arzhaeva Y, Bähler J.

Biotechniques. 2016 Oct 1;61(4):191-201. doi: 10.2144/000114459.

18.

Identification of nuclear genes affecting 2-Deoxyglucose resistance in Schizosaccharomyces pombe.

Vishwanatha A, Rallis C, Bevkal Subramanyaswamy S, D'Souza CJ, Bähler J, Schweingruber ME.

FEMS Yeast Res. 2016 Sep;16(6). pii: fow061. doi: 10.1093/femsyr/fow061. Epub 2016 Jul 31.

19.

Php4 Is a Key Player for Iron Economy in Meiotic and Sporulating Cells.

Brault A, Rallis C, Normant V, Garant JM, Bähler J, Labbé S.

G3 (Bethesda). 2016 Oct 13;6(10):3077-3095. doi: 10.1534/g3.116.031898.

20.

The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection.

Lemay JF, Marguerat S, Larochelle M, Liu X, van Nues R, Hunyadkürti J, Hoque M, Tian B, Granneman S, Bähler J, Bachand F.

Genes Dev. 2016 Jul 1;30(13):1558-72. doi: 10.1101/gad.280222.116.

21.

Selected Schizosaccharomyces pombe Strains Have Characteristics That Are Beneficial for Winemaking.

Benito Á, Jeffares D, Palomero F, Calderón F, Bai FY, Bähler J, Benito S.

PLoS One. 2016 Mar 23;11(3):e0151102. doi: 10.1371/journal.pone.0151102. eCollection 2016.

22.

Increasing extracellular H2O2 produces a bi-phasic response in intracellular H2O2, with peroxiredoxin hyperoxidation only triggered once the cellular H2O2-buffering capacity is overwhelmed.

Tomalin LE, Day AM, Underwood ZE, Smith GR, Dalle Pezze P, Rallis C, Patel W, Dickinson BC, Bähler J, Brewer TF, Chang CJ, Shanley DP, Veal EA.

Free Radic Biol Med. 2016 Jun;95:333-48. doi: 10.1016/j.freeradbiomed.2016.02.035. Epub 2016 Mar 2.

23.

AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast.

Bitton DA, Schubert F, Dey S, Okoniewski M, Smith GC, Khadayate S, Pancaldi V, Wood V, Bähler J.

Front Genet. 2015 Nov 16;6:330. doi: 10.3389/fgene.2015.00330. eCollection 2015.

24.

Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation.

Gal C, Murton HE, Subramanian L, Whale AJ, Moore KM, Paszkiewicz K, Codlin S, Bähler J, Creamer KM, Partridge JF, Allshire RC, Kent NA, Whitehall SK.

EMBO Rep. 2016 Jan;17(1):79-93. doi: 10.15252/embr.201540476. Epub 2015 Nov 18.

25.

Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations.

Lehtinen S, Bähler J, Orengo C.

Sci Rep. 2015 Nov 16;5:16726. doi: 10.1038/srep16726.

26.

A central role for TOR signalling in a yeast model for juvenile CLN3 disease.

Bond ME, Brown R, Rallis C, Bähler J, Mole SE.

Microb Cell. 2015 Nov 11;2(12):466-480. doi: 10.15698/mic2015.12.241.

27.

Cell-based screens and phenomics with fission yeast.

Rallis C, Bähler J.

Crit Rev Biochem Mol Biol. 2016;51(2):86-95. doi: 10.3109/10409238.2015.1103205. Epub 2015 Nov 2. Review.

PMID:
26523839
28.

Ace2 receives helping hand for cell-cycle transcription.

Rodríguez-López M, Bähler J.

Cell Cycle. 2015;14(21):3351-2. doi: 10.1080/15384101.2015.1093444. No abstract available.

29.

Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles.

Převorovský M, Oravcová M, Tvarůžková J, Zach R, Folk P, Půta F, Bähler J.

PLoS One. 2015 Sep 14;10(9):e0137820. doi: 10.1371/journal.pone.0137820. eCollection 2015.

30.

Gene Function Prediction from Functional Association Networks Using Kernel Partial Least Squares Regression.

Lehtinen S, Lees J, Bähler J, Shawe-Taylor J, Orengo C.

PLoS One. 2015 Aug 19;10(8):e0134668. doi: 10.1371/journal.pone.0134668. eCollection 2015.

31.

Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast.

Cotobal C, Rodríguez-López M, Duncan C, Hasan A, Yamashita A, Yamamoto M, Bähler J, Mata J.

Epigenetics Chromatin. 2015 Aug 15;8:28. doi: 10.1186/s13072-015-0018-4. eCollection 2015.

32.

Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast.

Bitton DA, Atkinson SR, Rallis C, Smith GC, Ellis DA, Chen YY, Malecki M, Codlin S, Lemay JF, Cotobal C, Bachand F, Marguerat S, Mata J, Bähler J.

Genome Res. 2015 Jun;25(6):884-96. doi: 10.1101/gr.185371.114. Epub 2015 Apr 16.

33.

Proportionality: a valid alternative to correlation for relative data.

Lovell D, Pawlowsky-Glahn V, Egozcue JJ, Marguerat S, Bähler J.

PLoS Comput Biol. 2015 Mar 16;11(3):e1004075. doi: 10.1371/journal.pcbi.1004075. eCollection 2015 Mar.

34.

The genomic and phenotypic diversity of Schizosaccharomyces pombe.

Jeffares DC, Rallis C, Rieux A, Speed D, Převorovský M, Mourier T, Marsellach FX, Iqbal Z, Lau W, Cheng TM, Pracana R, Mülleder M, Lawson JL, Chessel A, Bala S, Hellenthal G, O'Fallon B, Keane T, Simpson JT, Bischof L, Tomiczek B, Bitton DA, Sideri T, Codlin S, Hellberg JE, van Trigt L, Jeffery L, Li JJ, Atkinson S, Thodberg M, Febrer M, McLay K, Drou N, Brown W, Hayles J, Carazo Salas RE, Ralser M, Maniatis N, Balding DJ, Balloux F, Durbin R, Bähler J.

Nat Genet. 2015 Mar;47(3):235-41. doi: 10.1038/ng.3215. Epub 2015 Feb 9.

35.

Identification of new players in cell division, DNA damage response, and morphogenesis through construction of Schizosaccharomyces pombe deletion strains.

Chen JS, Beckley JR, McDonald NA, Ren L, Mangione M, Jang SJ, Elmore ZC, Rachfall N, Feoktistova A, Jones CM, Willet AH, Guillen R, Bitton DA, Bähler J, Jensen MA, Rhind N, Gould KL.

G3 (Bethesda). 2014 Dec 31;5(3):361-70. doi: 10.1534/g3.114.015701.

36.

Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence.

Sideri T, Rallis C, Bitton DA, Lages BM, Suo F, Rodríguez-López M, Du LL, Bähler J.

G3 (Bethesda). 2014 Dec 1;5(1):145-55. doi: 10.1534/g3.114.014415.

37.

Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.

Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, Rodríguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A.

Mol Syst Biol. 2014 Nov 28;10:764. doi: 10.15252/msb.20145123.

38.

PomBase 2015: updates to the fission yeast database.

McDowall MD, Harris MA, Lock A, Rutherford K, Staines DM, Bähler J, Kersey PJ, Oliver SG, Wood V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D656-61. doi: 10.1093/nar/gku1040. Epub 2014 Oct 31.

39.

The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

Lemay JF, Larochelle M, Marguerat S, Atkinson S, Bähler J, Bachand F.

Nat Struct Mol Biol. 2014 Oct;21(10):919-26. doi: 10.1038/nsmb.2893. Epub 2014 Sep 21.

PMID:
25240800
40.

Lithium suppresses Aβ pathology by inhibiting translation in an adult Drosophila model of Alzheimer's disease.

Sofola-Adesakin O, Castillo-Quan JI, Rallis C, Tain LS, Bjedov I, Rogers I, Li L, Martinez P, Khericha M, Cabecinha M, Bähler J, Partridge L.

Front Aging Neurosci. 2014 Jul 30;6:190. doi: 10.3389/fnagi.2014.00190. eCollection 2014.

41.
42.

Regulation of spindle pole body assembly and cytokinesis by the centrin-binding protein Sfi1 in fission yeast.

Lee IJ, Wang N, Hu W, Schott K, Bähler J, Giddings TH Jr, Pringle JR, Du LL, Wu JQ.

Mol Biol Cell. 2014 Sep 15;25(18):2735-49. doi: 10.1091/mbc.E13-11-0699. Epub 2014 Jul 16.

43.

Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress.

Marguerat S, Lawler K, Brazma A, Bähler J.

RNA Biol. 2014;11(6):702-14. Epub 2014 Jul 9.

44.

A novel histone deacetylase complex in the control of transcription and genome stability.

Zilio N, Codlin S, Vashisht AA, Bitton DA, Head SR, Wohlschlegel JA, Bähler J, Boddy MN.

Mol Cell Biol. 2014 Sep 15;34(18):3500-14. doi: 10.1128/MCB.00519-14. Epub 2014 Jul 7.

45.

A histone H3K36 chromatin switch coordinates DNA double-strand break repair pathway choice.

Pai CC, Deegan RS, Subramanian L, Gal C, Sarkar S, Blaikley EJ, Walker C, Hulme L, Bernhard E, Codlin S, Bähler J, Allshire R, Whitehall S, Humphrey TC.

Nat Commun. 2014 Jun 9;5:4091. doi: 10.1038/ncomms5091.

46.

LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.

Bitton DA, Rallis C, Jeffares DC, Smith GC, Chen YY, Codlin S, Marguerat S, Bähler J.

Genome Res. 2014 Jul;24(7):1169-79. doi: 10.1101/gr.166819.113. Epub 2014 Apr 7.

47.

The DNA damage checkpoint pathway promotes extensive resection and nucleotide synthesis to facilitate homologous recombination repair and genome stability in fission yeast.

Blaikley EJ, Tinline-Purvis H, Kasparek TR, Marguerat S, Sarkar S, Hulme L, Hussey S, Wee BY, Deegan RS, Walker CA, Pai CC, Bähler J, Nakagawa T, Humphrey TC.

Nucleic Acids Res. 2014 May;42(9):5644-56. doi: 10.1093/nar/gku190. Epub 2014 Mar 12.

48.

Individual letters of the RNA polymerase II CTD code govern distinct gene expression programs in fission yeast.

Schwer B, Bitton DA, Sanchez AM, Bähler J, Shuman S.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4185-90. doi: 10.1073/pnas.1321842111. Epub 2014 Mar 3.

49.

Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth.

Rallis C, López-Maury L, Georgescu T, Pancaldi V, Bähler J.

Biol Open. 2014 Feb 15;3(2):161-71. doi: 10.1242/bio.20147245.

50.

Genome-wide analysis of poly(A) site selection in Schizosaccharomyces pombe.

Schlackow M, Marguerat S, Proudfoot NJ, Bähler J, Erban R, Gullerova M.

RNA. 2013 Dec;19(12):1617-31. doi: 10.1261/rna.040675.113. Epub 2013 Oct 23.

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