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Items: 1 to 50 of 77

1.

Consequences of impaired 1-MDa TIC complex assembly for the abundance and composition of chloroplast high-molecular mass protein complexes.

Schäfer P, Helm S, Köhler D, Agne B, Baginsky S.

PLoS One. 2019 Mar 13;14(3):e0213364. doi: 10.1371/journal.pone.0213364. eCollection 2019.

2.

Tailored Use of Targeted Proteomics in Plant-Specific Applications.

Rödiger A, Baginsky S.

Front Plant Sci. 2018 Aug 17;9:1204. doi: 10.3389/fpls.2018.01204. eCollection 2018. No abstract available.

3.

Chloroplast-localized BICAT proteins shape stromal calcium signals and are required for efficient photosynthesis.

Frank J, Happeck R, Meier B, Hoang MTT, Stribny J, Hause G, Ding H, Morsomme P, Baginsky S, Peiter E.

New Phytol. 2019 Jan;221(2):866-880. doi: 10.1111/nph.15407. Epub 2018 Aug 31.

PMID:
30169890
4.

MAPKs Influence Pollen Tube Growth by Controlling the Formation of Phosphatidylinositol 4,5-Bisphosphate in an Apical Plasma Membrane Domain.

Hempel F, Stenzel I, Heilmann M, Krishnamoorthy P, Menzel W, Golbik R, Helm S, Dobritzsch D, Baginsky S, Lee J, Hoehenwarter W, Heilmann I.

Plant Cell. 2017 Dec;29(12):3030-3050. doi: 10.1105/tpc.17.00543. Epub 2017 Nov 22.

5.

MSE for Label-Free Absolute Protein Quantification in Complex Proteomes.

Helm S, Baginsky S.

Methods Mol Biol. 2018;1696:235-247. doi: 10.1007/978-1-4939-7411-5_16.

PMID:
29086408
6.

Synergistic Toxicity of Copper and Gold Compounds in Cupriavidus metallidurans.

Wiesemann N, Bütof L, Herzberg M, Hause G, Berthold L, Etschmann B, Brugger J, Martinez-Criado G, Dobritzsch D, Baginsky S, Reith F, Nies DH.

Appl Environ Microbiol. 2017 Nov 16;83(23). pii: e01679-17. doi: 10.1128/AEM.01679-17. Print 2017 Dec 1.

7.

Identification of STN7/STN8 kinase targets reveals connections between electron transport, metabolism and gene expression.

Schönberg A, Rödiger A, Mehwald W, Galonska J, Christ G, Helm S, Thieme D, Majovsky P, Hoehenwarter W, Baginsky S.

Plant J. 2017 Jun;90(6):1176-1186. doi: 10.1111/tpj.13536. Epub 2017 Apr 21.

8.

The novel chloroplast outer membrane kinase KOC1 is a required component of the plastid protein import machinery.

Zufferey M, Montandon C, Douet V, Demarsy E, Agne B, Baginsky S, Kessler F.

J Biol Chem. 2017 Apr 28;292(17):6952-6964. doi: 10.1074/jbc.M117.776468. Epub 2017 Mar 10.

9.

Protein import-independent functions of Tic56, a component of the 1-MDa translocase at the inner chloroplast envelope membrane.

Agne B, Köhler D, Baginsky S.

Plant Signal Behav. 2017 Mar 4;12(3):e1284726. doi: 10.1080/15592324.2017.1284726.

10.

Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly.

Köhler D, Helm S, Agne B, Baginsky S.

Plant Physiol. 2016 Dec;172(4):2429-2444. Epub 2016 Oct 12.

11.

Identification of four plastid-localized protein kinases.

Richter AS, Gartmann H, Fechler M, Rödiger A, Baginsky S, Grimm B.

FEBS Lett. 2016 Jun;590(12):1749-56. doi: 10.1002/1873-3468.12223. Epub 2016 Jun 7.

12.

Protein phosphorylation in chloroplasts - a survey of phosphorylation targets.

Baginsky S.

J Exp Bot. 2016 Jun;67(13):3873-82. doi: 10.1093/jxb/erw098. Epub 2016 Mar 11. Review.

PMID:
26969742
13.

Identification of protein N-termini in Cyanophora paradoxa cyanelles: transit peptide composition and sequence determinants for precursor maturation.

Köhler D, Dobritzsch D, Hoehenwarter W, Helm S, Steiner JM, Baginsky S.

Front Plant Sci. 2015 Jul 22;6:559. doi: 10.3389/fpls.2015.00559. eCollection 2015.

14.

On the Extent of Tyrosine Phosphorylation in Chloroplasts.

Lu Q, Helm S, Rödiger A, Baginsky S.

Plant Physiol. 2015 Oct;169(2):996-1000. doi: 10.1104/pp.15.00921. Epub 2015 Aug 4. No abstract available.

15.

The Peptide Microarray ChloroPhos1.0: A Screening Tool for the Identification of Arabidopsis thaliana Chloroplast Protein Kinase Substrates.

Schönberg A, Baginsky S.

Methods Mol Biol. 2015;1306:147-57. doi: 10.1007/978-1-4939-2648-0_11.

PMID:
25930700
16.

Characterization of chloroplast protein import without Tic56, a component of the 1-megadalton translocon at the inner envelope membrane of chloroplasts.

Köhler D, Montandon C, Hause G, Majovsky P, Kessler F, Baginsky S, Agne B.

Plant Physiol. 2015 Mar;167(3):972-90.

17.

High light-dependent phosphorylation of photosystem II inner antenna CP29 in monocots is STN7 independent and enhances nonphotochemical quenching.

Betterle N, Ballottari M, Baginsky S, Bassi R.

Plant Physiol. 2015 Feb;167(2):457-71. doi: 10.1104/pp.114.252379. Epub 2014 Dec 10.

18.

Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).

Lu Q, Ding S, Reiland S, Rödiger A, Roschitzki B, Xue P, Gruissem W, Lu C, Baginsky S.

J Exp Bot. 2015 Jan;66(1):175-87. doi: 10.1093/jxb/eru405. Epub 2014 Oct 14.

19.

The zinc repository of Cupriavidus metallidurans.

Herzberg M, Dobritzsch D, Helm S, Baginsky S, Nies DH.

Metallomics. 2014 Nov;6(11):2157-65. doi: 10.1039/c4mt00171k.

PMID:
25315396
20.

The peptide microarray "ChloroPhos1.0" identifies new phosphorylation targets of plastid casein kinase II (pCKII) in Arabidopsis thaliana.

Schönberg A, Bergner E, Helm S, Agne B, Dünschede B, Schünemann D, Schutkowski M, Baginsky S.

PLoS One. 2014 Oct 8;9(10):e108344. doi: 10.1371/journal.pone.0108344. eCollection 2014.

21.

Comparative proteomic analysis of amaranth mesophyll and bundle sheath chloroplasts and their adaptation to salt stress.

Joaquín-Ramos A, Huerta-Ocampo JÁ, Barrera-Pacheco A, De León-Rodríguez A, Baginsky S, Barba de la Rosa AP.

J Plant Physiol. 2014 Sep 15;171(15):1423-35. doi: 10.1016/j.jplph.2014.06.006. Epub 2014 Jun 26.

PMID:
25046763
22.

The RNA-binding protein RNP29 is an unusual Toc159 transport substrate.

Grimmer J, Rödiger A, Hoehenwarter W, Helm S, Baginsky S.

Front Plant Sci. 2014 Jun 16;5:258. doi: 10.3389/fpls.2014.00258. eCollection 2014.

23.

Protein identification and quantification by data-independent acquisition and multi-parallel collision-induced dissociation mass spectrometry (MS(E)) in the chloroplast stroma proteome.

Helm S, Dobritzsch D, Rödiger A, Agne B, Baginsky S.

J Proteomics. 2014 Feb 26;98:79-89. doi: 10.1016/j.jprot.2013.12.007. Epub 2013 Dec 18.

PMID:
24361574
24.

Arabidopsis proteomics: a simple and standardizable workflow for quantitative proteome characterization.

Rödiger A, Agne B, Baerenfaller K, Baginsky S.

Methods Mol Biol. 2014;1072:275-88. doi: 10.1007/978-1-62703-631-3_20.

PMID:
24136529
25.

Signal integration by chloroplast phosphorylation networks: an update.

Schönberg A, Baginsky S.

Front Plant Sci. 2012 Nov 20;3:256. doi: 10.3389/fpls.2012.00256. eCollection 2012.

26.

Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level.

Motohashi R, Rödiger A, Agne B, Baerenfaller K, Baginsky S.

Plant Physiol. 2012 Dec;160(4):2189-201. doi: 10.1104/pp.112.204032. Epub 2012 Oct 1.

27.

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.

Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C, Gruissem W.

Mol Syst Biol. 2012;8:606. doi: 10.1038/msb.2012.39.

28.

Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins.

Bischof S, Baerenfaller K, Wildhaber T, Troesch R, Vidi PA, Roschitzki B, Hirsch-Hoffmann M, Hennig L, Kessler F, Gruissem W, Baginsky S.

Plant Cell. 2011 Nov;23(11):3911-28. doi: 10.1105/tpc.111.092882. Epub 2011 Nov 29.

29.

Use of phosphoproteomics to study posttranslational protein modifications in Arabidopsis chloroplasts.

Endler A, Baginsky S.

Methods Mol Biol. 2011;775:283-96. doi: 10.1007/978-1-61779-237-3_15.

PMID:
21863449
30.

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).

Reiland S, Finazzi G, Endler A, Willig A, Baerenfaller K, Grossmann J, Gerrits B, Rutishauser D, Gruissem W, Rochaix JD, Baginsky S.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12955-60. doi: 10.1073/pnas.1104734108. Epub 2011 Jul 18.

31.

Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves.

Gfeller A, Baerenfaller K, Loscos J, Chételat A, Baginsky S, Farmer EE.

Plant Physiol. 2011 Aug;156(4):1797-807. doi: 10.1104/pp.111.181008. Epub 2011 Jun 21.

32.

Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.).

Reiland S, Grossmann J, Baerenfaller K, Gehrig P, Nunes-Nesi A, Fernie AR, Gruissem W, Baginsky S.

Proteomics. 2011 May;11(9):1751-63. doi: 10.1002/pmic.201000703. Epub 2011 Mar 23.

PMID:
21433289
33.

Plastid proteomics in higher plants: current state and future goals.

van Wijk KJ, Baginsky S.

Plant Physiol. 2011 Apr;155(4):1578-88. doi: 10.1104/pp.111.172932. Epub 2011 Feb 24. Review. No abstract available.

34.

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.

Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S.

Integr Biol (Camb). 2011 Mar;3(3):225-37. doi: 10.1039/c0ib00078g. Epub 2011 Jan 24.

PMID:
21264403
35.

The chloroplast import receptor Toc90 partially restores the accumulation of Toc159 client proteins in the Arabidopsis thaliana ppi2 mutant.

Infanger S, Bischof S, Hiltbrunner A, Agne B, Baginsky S, Kessler F.

Mol Plant. 2011 Mar;4(2):252-63. doi: 10.1093/mp/ssq071. Epub 2011 Jan 10.

36.

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL.

Plant Physiol. 2011 Jan;155(1):259-70. doi: 10.1104/pp.110.168195. Epub 2010 Nov 12.

37.

Arabidopsis thaliana as a model organism for plant proteome research.

Wienkoop S, Baginsky S, Weckwerth W.

J Proteomics. 2010 Oct 10;73(11):2239-48. doi: 10.1016/j.jprot.2010.07.012. Epub 2010 Aug 6. Review.

PMID:
20692386
38.

The acidic A-domain of Arabidopsis TOC159 occurs as a hyperphosphorylated protein.

Agne B, Andrès C, Montandon C, Christ B, Ertan A, Jung F, Infanger S, Bischof S, Baginsky S, Kessler F.

Plant Physiol. 2010 Jul;153(3):1016-30. doi: 10.1104/pp.110.158048. Epub 2010 May 10.

39.

Gene expression analysis, proteomics, and network discovery.

Baginsky S, Hennig L, Zimmermann P, Gruissem W.

Plant Physiol. 2010 Feb;152(2):402-10. doi: 10.1104/pp.109.150433. Epub 2009 Dec 11. Review. No abstract available.

40.

The chloroplast kinase network: new insights from large-scale phosphoproteome profiling.

Baginsky S, Gruissem W.

Mol Plant. 2009 Nov;2(6):1141-53. doi: 10.1093/mp/ssp058. Epub 2009 Aug 10. Review.

41.

Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.

Reiland S, Messerli G, Baerenfaller K, Gerrits B, Endler A, Grossmann J, Gruissem W, Baginsky S.

Plant Physiol. 2009 Jun;150(2):889-903. doi: 10.1104/pp.109.138677. Epub 2009 Apr 17.

42.

In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach.

Endler A, Reiland S, Gerrits B, Schmidt UG, Baginsky S, Martinoia E.

Proteomics. 2009 Jan;9(2):310-21. doi: 10.1002/pmic.200800323.

PMID:
19142958
43.

The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology.

Weckwerth W, Baginsky S, van Wijk K, Heazlewood JL, Millar H.

J Proteome Res. 2008 Oct;7(10):4209-10. doi: 10.1021/pr800480u. Epub 2008 Sep 12. No abstract available.

PMID:
18785769
44.

Plant proteomics: concepts, applications, and novel strategies for data interpretation.

Baginsky S.

Mass Spectrom Rev. 2009 Jan-Feb;28(1):93-120. doi: 10.1002/mas.20183. Review.

PMID:
18618656
45.

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S.

Science. 2008 May 16;320(5878):938-41. doi: 10.1126/science.1157956. Epub 2008 Apr 24.

46.

A workflow to increase the detection rate of proteins from unsequenced organisms in high-throughput proteomics experiments.

Grossmann J, Fischer B, Baerenfaller K, Owiti J, Buhmann JM, Gruissem W, Baginsky S.

Proteomics. 2007 Dec;7(23):4245-54.

PMID:
18040981
47.

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra.

Roos FF, Jacob R, Grossmann J, Fischer B, Buhmann JM, Gruissem W, Baginsky S, Widmayer P.

Bioinformatics. 2007 Nov 15;23(22):3016-23. Epub 2007 Sep 3.

PMID:
17768164
48.

Novel tonoplast transporters identified using a proteomic approach with vacuoles isolated from cauliflower buds.

Schmidt UG, Endler A, Schelbert S, Brunner A, Schnell M, Neuhaus HE, Marty-Mazars D, Marty F, Baginsky S, Martinoia E.

Plant Physiol. 2007 Sep;145(1):216-29. Epub 2007 Jul 27.

49.

Proteome analysis of chloroplast mRNA processing and degradation.

Baginsky S, Grossmann J, Gruissem W.

J Proteome Res. 2007 Feb;6(2):809-20.

PMID:
17269737
50.

Identification of cellular interaction partners of the influenza virus ribonucleoprotein complex and polymerase complex using proteomic-based approaches.

Mayer D, Molawi K, Martínez-Sobrido L, Ghanem A, Thomas S, Baginsky S, Grossmann J, García-Sastre A, Schwemmle M.

J Proteome Res. 2007 Feb;6(2):672-82.

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