Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 124

1.

CEH-60/PBX regulates vitellogenesis and cuticle permeability through intestinal interaction with UNC-62/MEIS in Caenorhabditis elegans.

Van de Walle P, Geens E, Baggerman G, José Naranjo-Galindo F, Askjaer P, Schoofs L, Temmerman L.

PLoS Biol. 2019 Nov 1;17(11):e3000499. doi: 10.1371/journal.pbio.3000499. eCollection 2019 Nov.

2.

Redox homeostasis in the rice leaf growth zone plays a key role in cold tolerance.

Gázquez A, AbdElgawad H, Baggerman G, Raemdonck GV, Asard H, Maiale SJ, Rodríguez AA, Beemster GTS.

J Exp Bot. 2019 Oct 18. pii: erz455. doi: 10.1093/jxb/erz455. [Epub ahead of print]

PMID:
31624838
3.

A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis.

Hayakawa E, Watanabe H, Menschaert G, Holstein TW, Baggerman G, Schoofs L.

PLoS One. 2019 Sep 23;14(9):e0215185. doi: 10.1371/journal.pone.0215185. eCollection 2019.

4.

Beyond Genes: Re-Identifiability of Proteomic Data and Its Implications for Personalized Medicine.

Boonen K, Hens K, Menschaert G, Baggerman G, Valkenborg D, Ertaylan G.

Genes (Basel). 2019 Sep 5;10(9). pii: E682. doi: 10.3390/genes10090682.

5.

Connecting the Dots in the Neuroglobin-Protein Interaction Network of an Unstressed and Ferroptotic Cell Death Neuroblastoma Model.

Van Acker ZP, Van Raemdonck GA, Logie E, Van Acker SI, Baggerman G, Vanden Berghe W, Ponsaerts P, Dewilde S.

Cells. 2019 Aug 11;8(8). pii: E873. doi: 10.3390/cells8080873.

6.

Next-generation protein analysis in the pathology department.

Ahmed M, Broeckx G, Baggerman G, Schildermans K, Pauwels P, Van Craenenbroeck AH, Dendooven A.

J Clin Pathol. 2019 Jul 15. pii: jclinpath-2019-205864. doi: 10.1136/jclinpath-2019-205864. [Epub ahead of print] Review.

PMID:
31308255
7.

MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics.

Lermyte F, Dittwald P, Claesen J, Baggerman G, Sobott F, O'Connor PB, Laukens K, Hooyberghs J, Gambin A, Valkenborg D.

Anal Chem. 2019 Aug 6;91(15):10310-10319. doi: 10.1021/acs.analchem.9b02682. Epub 2019 Jul 23.

PMID:
31283196
8.

Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics.

Budamgunta H, Maes E, Willems H, Menschaert G, Schildermans K, Kumar AA, Boonen K, Baggerman G.

J Chromatogr B Analyt Technol Biomed Life Sci. 2019 Aug 15;1124:256-264. doi: 10.1016/j.jchromb.2019.06.017. Epub 2019 Jun 15.

PMID:
31238262
9.

MALDI Mass Spectrometry Imaging Linked with Top-Down Proteomics as a Tool to Study the Non-Small-Cell Lung Cancer Tumor Microenvironment.

Berghmans E, Van Raemdonck G, Schildermans K, Willems H, Boonen K, Maes E, Mertens I, Pauwels P, Baggerman G.

Methods Protoc. 2019 May 28;2(2). pii: E44. doi: 10.3390/mps2020044.

10.

QCQuan: A Web Tool for the Automated Assessment of Protein Expression and Data Quality of Labeled Mass Spectrometry Experiments.

Van Houtven J, Agten A, Boonen K, Baggerman G, Hooyberghs J, Laukens K, Valkenborg D.

J Proteome Res. 2019 May 3;18(5):2221-2227. doi: 10.1021/acs.jproteome.9b00072. Epub 2019 Apr 11.

PMID:
30942071
11.

Proteomic changes in oocytes after in vitro maturation in lipotoxic conditions are different from those in cumulus cells.

Marei WFA, Van Raemdonck G, Baggerman G, Bols PEJ, Leroy JLMR.

Sci Rep. 2019 Mar 6;9(1):3673. doi: 10.1038/s41598-019-40122-7.

12.

Ethylene Receptors, CTRs and EIN2 Target Protein Identification and Quantification Through Parallel Reaction Monitoring During Tomato Fruit Ripening.

Mata CI, Fabre B, Parsons HT, Hertog MLATM, Van Raemdonck G, Baggerman G, Van de Poel B, Lilley KS, Nicolaï BM.

Front Plant Sci. 2018 Nov 8;9:1626. doi: 10.3389/fpls.2018.01626. eCollection 2018.

13.

The challenges of peptidomics in complementing proteomics in a clinical context.

Maes E, Oeyen E, Boonen K, Schildermans K, Mertens I, Pauwels P, Valkenborg D, Baggerman G.

Mass Spectrom Rev. 2019 May;38(3):253-264. doi: 10.1002/mas.21581. Epub 2018 Oct 29. Review.

PMID:
30372792
14.

Proteomic analysis of posterior capsular plaques in congenital unilateral cataract.

Van Looveren J, Van Gerwen V, Schildermans K, Laukens K, Baggerman G, Tassignon MJ.

Acta Ophthalmol. 2018 Dec;96(8):e963-e969. doi: 10.1111/aos.13782. Epub 2018 Oct 3.

PMID:
30280517
15.

Ultrafiltration and size exclusion chromatography combined with asymmetrical-flow field-flow fractionation for the isolation and characterisation of extracellular vesicles from urine.

Oeyen E, Van Mol K, Baggerman G, Willems H, Boonen K, Rolfo C, Pauwels P, Jacobs A, Schildermans K, Cho WC, Mertens I.

J Extracell Vesicles. 2018 Jul 3;7(1):1490143. doi: 10.1080/20013078.2018.1490143. eCollection 2018.

16.

Comprehensive Peptide Analysis of Mouse Brain Striatum Identifies Novel sORF-Encoded Polypeptides.

Budamgunta H, Olexiouk V, Luyten W, Schildermans K, Maes E, Boonen K, Menschaert G, Baggerman G.

Proteomics. 2018 May;18(10):e1700218. doi: 10.1002/pmic.201700218. Erratum in: Proteomics. 2018 Aug;18(15):e1870118.

PMID:
29710410
17.

Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry.

Monroe EB, Annangudi SP, Wadhams AA, Richmond TA, Yang N, Southey BR, Romanova EV, Schoofs L, Baggerman G, Sweedler JV.

J Am Soc Mass Spectrom. 2018 May;29(5):923-934. doi: 10.1007/s13361-018-1898-x. Epub 2018 Apr 17.

18.

Neuropeptidomic Analysis of Zebrafish Brain.

Van Camp KA, Baggerman G, Blust R, Husson SJ.

Methods Mol Biol. 2018;1719:241-246. doi: 10.1007/978-1-4939-7537-2_16.

PMID:
29476516
19.

Quantitative Peptidomics with Isotopic and Isobaric Tags.

Boonen K, De Haes W, Van Houtven J, Verdonck R, Baggerman G, Valkenborg D, Schoofs L.

Methods Mol Biol. 2018;1719:141-159. doi: 10.1007/978-1-4939-7537-2_9.

PMID:
29476509
20.

A Gene Family Coding for Salivary Proteins (SHOT) of the Polyphagous Spider Mite Tetranychus urticae Exhibits Fast Host-Dependent Transcriptional Plasticity.

Jonckheere W, Dermauw W, Khalighi M, Pavlidi N, Reubens W, Baggerman G, Tirry L, Menschaert G, Kant MR, Vanholme B, Van Leeuwen T.

Mol Plant Microbe Interact. 2018 Jan;31(1):112-124. doi: 10.1094/MPMI-06-17-0139-R. Epub 2017 Nov 2.

PMID:
29094648
21.

Quantification of egg ovalbumin hydrolysate-derived anti-hypertensive peptides in an in vitro model combining luminal digestion with intestinal Caco-2 cell transport.

Grootaert C, Jacobs G, Matthijs B, Pitart J, Baggerman G, Possemiers S, Van der Saag H, Smagghe G, Van Camp J, Voorspoels S.

Food Res Int. 2017 Sep;99(Pt 1):531-541. doi: 10.1016/j.foodres.2017.06.002. Epub 2017 Jun 8.

PMID:
28784514
22.

Peptidomics of the zebrafish Danio rerio: In search for neuropeptides.

Van Camp KA, Baggerman G, Blust R, Husson SJ.

J Proteomics. 2017 Jan 6;150:290-296. doi: 10.1016/j.jprot.2016.09.015. Epub 2016 Oct 2.

PMID:
27705817
23.

MS imaging and mass spectrometric synaptosome profiling identify PEP-19/pcp4 as a synaptic molecule involved in spatial learning in mice.

Aerts J, Laeremans A, Minerva L, Boonen K, Harshavardhan B, D'hooge R, Valkenborg D, Baggerman G, Arckens L.

Biochim Biophys Acta Proteins Proteom. 2017 Jul;1865(7):936-945. doi: 10.1016/j.bbapap.2016.10.007. Epub 2016 Oct 26.

PMID:
27760390
24.

The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors.

Jonckheere W, Dermauw W, Zhurov V, Wybouw N, Van den Bulcke J, Villarroel CA, Greenhalgh R, Grbić M, Schuurink RC, Tirry L, Baggerman G, Clark RM, Kant MR, Vanholme B, Menschaert G, Van Leeuwen T.

Mol Cell Proteomics. 2016 Dec;15(12):3594-3613. Epub 2016 Oct 4.

25.

Assessing the Immunosafety of Engineered Nanoparticles with a Novel in Vitro Model Based on Human Primary Monocytes.

Li Y, Italiani P, Casals E, Valkenborg D, Mertens I, Baggerman G, Nelissen I, Puntes VF, Boraschi D.

ACS Appl Mater Interfaces. 2016 Oct 26;8(42):28437-28447. doi: 10.1021/acsami.6b06278. Epub 2016 Oct 13.

PMID:
27670583
26.

CONSTANd : A Normalization Method for Isobaric Labeled Spectra by Constrained Optimization.

Maes E, Hadiwikarta WW, Mertens I, Baggerman G, Hooyberghs J, Valkenborg D.

Mol Cell Proteomics. 2016 Aug;15(8):2779-90. doi: 10.1074/mcp.M115.056911. Epub 2016 Jun 14.

27.

Designing biomedical proteomics experiments: state-of-the-art and future perspectives.

Maes E, Kelchtermans P, Bittremieux W, De Grave K, Degroeve S, Hooyberghs J, Mertens I, Baggerman G, Ramon J, Laukens K, Martens L, Valkenborg D.

Expert Rev Proteomics. 2016 May;13(5):495-511. doi: 10.1586/14789450.2016.1172967. Epub 2016 Apr 25. Review.

PMID:
27031651
28.

Fast and Reliable Quantitative Peptidomics with labelpepmatch.

Verdonck R, De Haes W, Cardoen D, Menschaert G, Huhn T, Landuyt B, Baggerman G, Boonen K, Wenseleers T, Schoofs L.

J Proteome Res. 2016 Mar 4;15(3):1080-9. doi: 10.1021/acs.jproteome.5b00845. Epub 2016 Feb 16.

PMID:
26828777
29.

Proteomics applications in Caenorhabditis elegans research.

Husson SJ, Moyson S, Valkenborg D, Baggerman G, Mertens I.

Biochem Biophys Res Commun. 2015 Dec 25;468(4):519-24. doi: 10.1016/j.bbrc.2015.11.026. Epub 2015 Nov 14. Review.

PMID:
26585491
30.

Proteomics in cancer research: Are we ready for clinical practice?

Maes E, Mertens I, Valkenborg D, Pauwels P, Rolfo C, Baggerman G.

Crit Rev Oncol Hematol. 2015 Dec;96(3):437-48. doi: 10.1016/j.critrevonc.2015.07.006. Epub 2015 Aug 12. Review.

PMID:
26277237
31.

An effective plasma membrane proteomics approach for small tissue samples.

Smolders K, Lombaert N, Valkenborg D, Baggerman G, Arckens L.

Sci Rep. 2015 Jun 5;5:10917. doi: 10.1038/srep10917.

32.

Translating clinical proteomics: the importance of study design.

Maes E, Cho WC, Baggerman G.

Expert Rev Proteomics. 2015 Jun;12(3):217-9. doi: 10.1586/14789450.2015.1041512. Epub 2015 Apr 30. Review.

PMID:
25925311
33.

Determination of variation parameters as a crucial step in designing TMT-based clinical proteomics experiments.

Maes E, Valkenborg D, Baggerman G, Willems H, Landuyt B, Schoofs L, Mertens I.

PLoS One. 2015 Mar 16;10(3):e0120115. doi: 10.1371/journal.pone.0120115. eCollection 2015.

34.

The benefits and limitations of reaction cell and sector field inductively coupled plasma mass spectrometry in the detection and quantification of phosphopeptides.

Maes E, Brusten W, Beutels F, Baggerman G, Mertens I, Valkenborg D, Landuyt B, Schoofs L, Tirez K.

Rapid Commun Mass Spectrom. 2015 Jan 15;29(1):35-44. doi: 10.1002/rcm.7079.

PMID:
25462361
35.

Liquid biopsies in lung cancer: the new ambrosia of researchers.

Rolfo C, Castiglia M, Hong D, Alessandro R, Mertens I, Baggerman G, Zwaenepoel K, Gil-Bazo I, Passiglia F, Carreca AP, Taverna S, Vento R, Santini D, Peeters M, Russo A, Pauwels P.

Biochim Biophys Acta. 2014 Dec;1846(2):539-46. doi: 10.1016/j.bbcan.2014.10.001. Epub 2014 Oct 16. Review. Erratum in: Biochim Biophys Acta. 2015 Jan; 1855(1):17. Santini, Daniele [added].

PMID:
25444714
36.

The use of elemental mass spectrometry in phosphoproteomic applications.

Maes E, Tirez K, Baggerman G, Valkenborg D, Schoofs L, Encinar JR, Mertens I.

Mass Spectrom Rev. 2016 May-Jun;35(3):350-60. doi: 10.1002/mas.21440. Epub 2014 Aug 19. Review.

PMID:
25139451
37.

Colorectal cancer biomarker discovery and validation using LC-MS/MS-based proteomics in blood: truth or dare?

Reumer A, Maes E, Mertens I, Cho WC, Landuyt B, Valkenborg D, Schoofs L, Baggerman G.

Expert Rev Proteomics. 2014 Aug;11(4):449-63. doi: 10.1586/14789450.2014.905743. Epub 2014 Apr 7. Review.

PMID:
24702250
38.

The use of the isotopic distribution as a complementary quality metric to assess tandem mass spectra results.

Ghavidel FZ, Mertens I, Baggerman G, Laukens K, Burzykowski T, Valkenborg D.

J Proteomics. 2014 Feb 26;98:150-8. doi: 10.1016/j.jprot.2013.12.013. Epub 2013 Dec 31.

PMID:
24384257
39.

Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs.

Crappé J, Van Criekinge W, Trooskens G, Hayakawa E, Luyten W, Baggerman G, Menschaert G.

BMC Genomics. 2013 Sep 23;14:648. doi: 10.1186/1471-2164-14-648.

40.

Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation.

Hayakawa E, Menschaert G, De Bock PJ, Luyten W, Gevaert K, Baggerman G, Schoofs L.

J Proteome Res. 2013 Dec 6;12(12):5410-21. doi: 10.1021/pr400446z. Epub 2013 Oct 3.

PMID:
24032530
41.

Proteomic analysis of formalin-fixed paraffin-embedded colorectal cancer tissue using tandem mass tag protein labeling.

Maes E, Valkenborg D, Mertens I, Broeckx V, Baggerman G, Sagaert X, Landuyt B, Prenen H, Schoofs L.

Mol Biosyst. 2013 Nov;9(11):2686-95. doi: 10.1039/c3mb70177h.

PMID:
23986405
42.

Frog nuptial pads secrete mating season-specific proteins related to salamander pheromones.

Willaert B, Bossuyt F, Janssenswillen S, Adriaens D, Baggerman G, Matthijs S, Pauwels E, Proost P, Raepsaet A, Schoofs L, Stegen G, Treer D, Van Hoorebeke L, Vandebergh W, Van Bocxlaer I.

J Exp Biol. 2013 Nov 15;216(Pt 22):4139-43. doi: 10.1242/jeb.086363. Epub 2013 Aug 15.

43.

Evaluation of normalization methods to pave the way towards large-scale LC-MS-based metabolomics profiling experiments.

Ejigu BA, Valkenborg D, Baggerman G, Vanaerschot M, Witters E, Dujardin JC, Burzykowski T, Berg M.

OMICS. 2013 Sep;17(9):473-85. doi: 10.1089/omi.2013.0010. Epub 2013 Jun 29.

44.

Peptidomic analysis of human reflex tear fluid.

Hayakawa E, Landuyt B, Baggerman G, Cuyvers R, Lavigne R, Luyten W, Schoofs L.

Peptides. 2013 Apr;42:63-9. doi: 10.1016/j.peptides.2012.11.018. Epub 2012 Dec 8.

PMID:
23228955
45.

MALDI MS imaging as a tool for biomarker discovery: methodological challenges in a clinical setting.

Minerva L, Ceulemans A, Baggerman G, Arckens L.

Proteomics Clin Appl. 2012 Dec;6(11-12):581-95. doi: 10.1002/prca.201200033. Review.

PMID:
23090913
46.

Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool.

Menschaert G, Hayakawa E, Schoofs L, Van Criekinge W, Baggerman G.

J Proteome Res. 2012 May 4;11(5):2774-85. doi: 10.1021/pr201114m. Epub 2012 Mar 30.

PMID:
22409323
47.

Linking mass spectrometric imaging and traditional peptidomics: a validation in the obese mouse model.

Minerva L, Boonen K, Menschaert G, Landuyt B, Baggerman G, Arckens L.

Anal Chem. 2011 Oct 15;83(20):7682-91. doi: 10.1021/ac200888j. Epub 2011 Sep 27.

PMID:
21913672
48.

A systems biology approach to browning in apple: proteomics.

Buts K, Hertog ML, Baggerman G, Nicolaï BM.

Commun Agric Appl Biol Sci. 2011;76(1):245-8. No abstract available.

PMID:
21539241
49.

Comparison of extraction methods for peptidomics analysis of mouse brain tissue.

Van Dijck A, Hayakawa E, Landuyt B, Baggerman G, Van Dam D, Luyten W, Schoofs L, De Deyn PP.

J Neurosci Methods. 2011 Apr 30;197(2):231-7. doi: 10.1016/j.jneumeth.2011.02.023. Epub 2011 Mar 2.

PMID:
21376080
50.

Neuropeptide biology in Drosophila.

Clynen E, Reumer A, Baggerman G, Mertens I, Schoofs L.

Adv Exp Med Biol. 2010;692:192-210. Review.

PMID:
21189680

Supplemental Content

Loading ...
Support Center