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Items: 41

1.

Scleraxis regulates Twist1 and Snai1 expression in epithelial-to-mesenchymal transition.

Al-Hattab DS, Safi HA, Nagalingam RS, Bagchi RA, Stecy MT, Czubryt MP.

Am J Physiol Heart Circ Physiol. 2018 Jun 15. doi: 10.1152/ajpheart.00092.2018. [Epub ahead of print]

PMID:
29906225
2.

Regulation of cardiac fibroblast MMP2 gene expression by scleraxis.

Nagalingam RS, Safi HA, Al-Hattab DS, Bagchi RA, Landry NM, Dixon IMC, Wigle JT, Czubryt MP.

J Mol Cell Cardiol. 2018 Jul;120:64-73. doi: 10.1016/j.yjmcc.2018.05.004. Epub 2018 May 8.

PMID:
29750994
3.

Anthropogenic fragmentation of landscapes: mechanisms for eroding the specificity of plant-herbivore interactions.

Bagchi R, Brown LM, Elphick CS, Wagner DL, Singer MS.

Oecologia. 2018 Jun;187(2):521-533. doi: 10.1007/s00442-018-4115-5. Epub 2018 Mar 21. Review.

PMID:
29560512
4.

The Arabidopsis ALF4 protein is a regulator of SCF E3 ligases.

Bagchi R, Melnyk CW, Christ G, Winkler M, Kirchsteiner K, Salehin M, Mergner J, Niemeyer M, Schwechheimer C, Calderón Villalobos LIA, Estelle M.

EMBO J. 2018 Jan 17;37(2):255-268. doi: 10.15252/embj.201797159. Epub 2017 Dec 12.

PMID:
29233834
5.

DUSP5 functions as a feedback regulator of TNFα-induced ERK1/2 dephosphorylation and inflammatory gene expression in adipocytes.

Habibian JS, Jefic M, Bagchi RA, Lane RH, McKnight RA, McKinsey TA, Morrison RF, Ferguson BS.

Sci Rep. 2017 Oct 10;7(1):12879. doi: 10.1038/s41598-017-12861-y.

6.

Regulation of fibronectin gene expression in cardiac fibroblasts by scleraxis.

Bagchi RA, Lin J, Wang R, Czubryt MP.

Cell Tissue Res. 2016 Nov;366(2):381-391. doi: 10.1007/s00441-016-2439-1. Epub 2016 Jun 21.

PMID:
27324126
7.

Role of scleraxis in mechanical stretch-mediated regulation of cardiac myofibroblast phenotype.

Roche PL, Nagalingam RS, Bagchi RA, Aroutiounova N, Belisle BM, Wigle JT, Czubryt MP.

Am J Physiol Cell Physiol. 2016 Aug 1;311(2):C297-307. doi: 10.1152/ajpcell.00333.2015. Epub 2016 Jun 29.

8.

The transcription factor scleraxis is a critical regulator of cardiac fibroblast phenotype.

Bagchi RA, Roche P, Aroutiounova N, Espira L, Abrenica B, Schweitzer R, Czubryt MP.

BMC Biol. 2016 Mar 17;14:21. doi: 10.1186/s12915-016-0243-8.

9.

Regulation of scleraxis transcriptional activity by serine phosphorylation.

Bagchi RA, Wang R, Jahan F, Wigle JT, Czubryt MP.

J Mol Cell Cardiol. 2016 Mar;92:140-8. doi: 10.1016/j.yjmcc.2016.02.013. Epub 2016 Feb 13.

PMID:
26883788
10.

Microarray analysis of pancreatic gene expression during biotin repletion in biotin-deficient rats.

Dakshinamurti K, Bagchi RA, Abrenica B, Czubryt MP.

Can J Physiol Pharmacol. 2015 Dec;93(12):1103-10. doi: 10.1139/cjpp-2014-0517. Epub 2015 Aug 27.

PMID:
26312779
11.

Predicting dispersal of auto-gyrating fruit in tropical trees: a case study from the Dipterocarpaceae.

Smith JR, Bagchi R, Ellens J, Kettle CJ, Burslem DF, Maycock CR, Khoo E, Ghazoul J.

Ecol Evol. 2015 May;5(9):1794-801. doi: 10.1002/ece3.1469. Epub 2015 Apr 2.

12.

Development of a high throughput luciferase reporter gene system for screening activators and repressors of human collagen Iα2 gene expression.

Bagchi RA, Mozolevska V, Abrenica B, Czubryt MP.

Can J Physiol Pharmacol. 2015 Oct;93(10):887-92. doi: 10.1139/cjpp-2014-0521. Epub 2015 May 8.

PMID:
25955599
13.

Intracellular signaling of cardiac fibroblasts.

Roche PL, Filomeno KL, Bagchi RA, Czubryt MP.

Compr Physiol. 2015 Apr;5(2):721-60. doi: 10.1002/cphy.c140044. Review.

PMID:
25880511
14.

SCFTIR1/AFB-based auxin perception: mechanism and role in plant growth and development.

Salehin M, Bagchi R, Estelle M.

Plant Cell. 2015 Jan;27(1):9-19. doi: 10.1105/tpc.114.133744. Epub 2015 Jan 20. Review.

15.

Shifting baselines on a tropical forest frontier: extirpations drive declines in local ecological knowledge.

Kai Z, Woan TS, Jie L, Goodale E, Kitajima K, Bagchi R, Harrison RD.

PLoS One. 2014 Jan 21;9(1):e86598. doi: 10.1371/journal.pone.0086598. eCollection 2014. Erratum in: PLoS One. 2014;9(3):e92931.

16.

Pathogens and insect herbivores drive rainforest plant diversity and composition.

Bagchi R, Gallery RE, Gripenberg S, Gurr SJ, Narayan L, Addis CE, Freckleton RP, Lewis OT.

Nature. 2014 Feb 6;506(7486):85-8. doi: 10.1038/nature12911. Epub 2014 Jan 22.

PMID:
24463522
17.

Mechanism of cardiomyocyte PGC-1α gene regulation by ERRα.

Ramjiawan A, Bagchi RA, Albak L, Czubryt MP.

Biochem Cell Biol. 2013 Jun;91(3):148-54. doi: 10.1139/bcb-2012-0080. Epub 2012 Nov 28.

PMID:
23668787
18.

Roles of histone deacetylation and AMP kinase in regulation of cardiomyocyte PGC-1α gene expression in hypoxia.

Ramjiawan A, Bagchi RA, Blant A, Albak L, Cavasin MA, Horn TR, McKinsey TA, Czubryt MP.

Am J Physiol Cell Physiol. 2013 Jun 1;304(11):C1064-72. doi: 10.1152/ajpcell.00262.2012. Epub 2013 Mar 20.

19.

Evaluating the effectiveness of conservation site networks under climate change: accounting for uncertainty.

Bagchi R, Crosby M, Huntley B, Hole DG, Butchart SH, Collingham Y, Kalra M, Rajkumar J, Rahmani A, Pandey M, Gurung H, Trai le T, Van Quang N, Willis SG.

Glob Chang Biol. 2013 Apr;19(4):1236-48. doi: 10.1111/gcb.12123. Epub 2013 Jan 24.

PMID:
23504899
20.

Higher levels of multiple ecosystem services are found in forests with more tree species.

Gamfeldt L, Snäll T, Bagchi R, Jonsson M, Gustafsson L, Kjellander P, Ruiz-Jaen MC, Fröberg M, Stendahl J, Philipson CD, Mikusiński G, Andersson E, Westerlund B, Andrén H, Moberg F, Moen J, Bengtsson J.

Nat Commun. 2013;4:1340. doi: 10.1038/ncomms2328.

21.

Allelic differences in Medicago truncatula NIP/LATD mutants correlate with their encoded proteins' transport activities in planta.

Salehin M, Huang YS, Bagchi R, Sherrier DJ, Dickstein R.

Plant Signal Behav. 2013 Feb;8(2):e22813. doi: 10.4161/psb.22813. Epub 2012 Nov 15.

22.

Consequences of changing rainfall for fungal pathogen-induced mortality in tropical tree seedlings.

Swinfield T, Lewis OT, Bagchi R, Freckleton RP.

Ecol Evol. 2012 Jul;2(7):1408-13. doi: 10.1002/ece3.252.

23.

Phenotype modulation of airway smooth muscle in asthma.

Wright DB, Trian T, Siddiqui S, Pascoe CD, Johnson JR, Dekkers BG, Dakshinamurti S, Bagchi R, Burgess JK, Kanabar V, Ojo OO.

Pulm Pharmacol Ther. 2013 Feb;26(1):42-9. doi: 10.1016/j.pupt.2012.08.005. Epub 2012 Aug 23. Review.

PMID:
22939888
24.

Functional phenotype of airway myocytes from asthmatic airways.

Wright DB, Trian T, Siddiqui S, Pascoe CD, Ojo OO, Johnson JR, Dekkers BG, Dakshinamurti S, Bagchi R, Burgess JK, Kanabar V.

Pulm Pharmacol Ther. 2013 Feb;26(1):95-104. doi: 10.1016/j.pupt.2012.08.003. Epub 2012 Aug 17. Review.

PMID:
22921313
25.

Novel non-canonical TGF-β signaling networks: emerging roles in airway smooth muscle phenotype and function.

Yeganeh B, Mukherjee S, Moir LM, Kumawat K, Kashani HH, Bagchi RA, Baarsma HA, Gosens R, Ghavami S.

Pulm Pharmacol Ther. 2013 Feb;26(1):50-63. doi: 10.1016/j.pupt.2012.07.006. Epub 2012 Jul 31. Review.

PMID:
22874922
26.

Functional assessment of the Medicago truncatula NIP/LATD protein demonstrates that it is a high-affinity nitrate transporter.

Bagchi R, Salehin M, Adeyemo OS, Salazar C, Shulaev V, Sherrier DJ, Dickstein R.

Plant Physiol. 2012 Oct;160(2):906-16. doi: 10.1104/pp.112.196444. Epub 2012 Aug 2.

27.

Synergistic roles of scleraxis and Smads in the regulation of collagen 1α2 gene expression.

Bagchi RA, Czubryt MP.

Biochim Biophys Acta. 2012 Oct;1823(10):1936-44. doi: 10.1016/j.bbamcr.2012.07.002. Epub 2012 Jul 13.

28.

Smooth muscle in tissue remodeling and hyper-reactivity: airways and arteries.

Rydell-Törmänen K, Risse PA, Kanabar V, Bagchi R, Czubryt MP, Johnson JR.

Pulm Pharmacol Ther. 2013 Feb;26(1):13-23. doi: 10.1016/j.pupt.2012.04.003. Epub 2012 Apr 28. Review.

PMID:
22561160
29.

Impacts of logging on density-dependent predation of dipterocarp seeds in a South East Asian rainforest.

Bagchi R, Philipson CD, Slade EM, Hector A, Phillips S, Villanueva JF, Lewis OT, Lyal CH, Nilus R, Madran A, Scholes JD, Press MC.

Philos Trans R Soc Lond B Biol Sci. 2011 Nov 27;366(1582):3246-55. doi: 10.1098/rstb.2011.0034.

30.

Spatial patterns reveal negative density dependence and habitat associations in tropical trees.

Bagchi R, Henrys PA, Brown PE, Burslem DF, Diggle PJ, Gunatilleke CV, Gunatilleke IA, Kassim AR, Law R, Noor S, Valencia RL.

Ecology. 2011 Sep;92(9):1723-9.

PMID:
21939068
31.

General stabilizing effects of plant diversity on grassland productivity through population asynchrony and overyielding.

Hector A, Hautier Y, Saner P, Wacker L, Bagchi R, Joshi J, Scherer-Lorenzen M, Spehn EM, Bazeley-White E, Weilenmann M, Caldeira MC, Dimitrakopoulos PG, Finn JA, Huss-Danell K, Jumpponen A, Mulder CP, Palmborg C, Pereira JS, Siamantziouras AS, Terry AC, Troumbis AY, Schmid B, Loreau M.

Ecology. 2010 Aug;91(8):2213-20.

PMID:
20836442
32.

Testing the Janzen-Connell mechanism: pathogens cause overcompensating density dependence in a tropical tree.

Bagchi R, Swinfield T, Gallery RE, Lewis OT, Gripenberg S, Narayan L, Freckleton RP.

Ecol Lett. 2010 Oct;13(10):1262-9. doi: 10.1111/j.1461-0248.2010.01520.x. Epub 2010 Aug 16.

PMID:
20718845
33.

Effects of seed predators of different body size on seed mortality in Bornean logged forest.

Hautier Y, Saner P, Philipson C, Bagchi R, Ong RC, Hector A.

PLoS One. 2010 Jul 19;5(7):e11651. doi: 10.1371/journal.pone.0011651.

34.

Evolutionary history and distance dependence control survival of dipterocarp seedlings.

Bagchi R, Press MC, Scholes JD.

Ecol Lett. 2010 Jan;13(1):51-9. doi: 10.1111/j.1461-0248.2009.01397.x. Epub 2009 Oct 22.

PMID:
19849708
35.

Biodiversity and ecosystem multifunctionality.

Hector A, Bagchi R.

Nature. 2007 Jul 12;448(7150):188-90.

PMID:
17625564
36.

Phosphorus supply influences heathland responses to atmospheric nitrogen deposition.

Pilkington MG, Caporn SJ, Carroll JA, Cresswell N, Lee JA, Emmett BA, Bagchi R.

Environ Pollut. 2007 Jul;148(1):191-200. Epub 2006 Dec 19.

PMID:
17182158
37.

Acute lumbosacral radiculopathy associated with McRoberts' manoeuvre.

Bagchi R, Sturman S.

J Obstet Gynaecol. 2003 May;23(3):308-9. No abstract available.

PMID:
12854576
38.

Studies on bioremediation of polycyclic aromatic hydrocarbon-contaminated sediments: bioavailability, biodegradability, and toxicity issues.

Tabak HH, Lazorchak JM, Lei L, Khodadoust AP, Antia JE, Bagchi R, Suidan MT.

Environ Toxicol Chem. 2003 Mar;22(3):473-82.

PMID:
12627632
39.

Removal of PAHs from highly contaminated soils found at prior manufactured gas operations.

Khodadoust AP, Bagchi R, Suidan MT, Brenner RC, Sellers NG.

J Hazard Mater. 2000 Dec 30;80(1-3):159-74.

PMID:
11080576
40.
41.

A New Method for the Determination of Small Quantities of Cocaine in Presence of Novocaine.

Bagchi RBKN, Ganguli HD, Mukerjee PN, Banerjee JN.

Ind Med Gaz. 1939 Jan;74(1):29-31. No abstract available.

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