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Items: 1 to 50 of 255

1.

Identification and analyses of natural compounds as potential inhibitors of TRAF6-Basigin interactions in melanoma using structure-based virtual screening and molecular dynamics simulations.

Biswas R, Chowdhury N, Mukherjee R, Bagchi A.

J Mol Graph Model. 2018 Sep 17;85:281-293. doi: 10.1016/j.jmgm.2018.09.008. [Epub ahead of print]

PMID:
30253283
2.

Comparative analysis of prokaryotic and eukaryotic transcription factors using machine-learning techniques.

Nilkanta C, Bagchi A.

Bioinformation. 2018 Jun 30;14(6):315-326. doi: 10.6026/97320630014315. eCollection 2018.

3.

Normative Data on Foveal Avascular Zone Dimensions in Four Macular Vascular Layers.

Schwartz R, Bagchi A, Dubis A, Hykin P, Sivaprasad S.

Ophthalmic Surg Lasers Imaging Retina. 2018 Aug 1;49(8):580-586. doi: 10.3928/23258160-20180803-05.

PMID:
30114302
4.

Disease Probability Index (DPI, χ): A new alignment-free scoring method to evaluate the propensities of polypeptide sequences leading to disease onset.

Ali A, Bagchi A.

Biosystems. 2018 Oct;172:1-8. doi: 10.1016/j.biosystems.2018.06.001. Epub 2018 Aug 9.

PMID:
30099058
5.

On the atomistic-based continuum viscoelastic constitutive relations for axonal microtubules.

Adnan A, Qidwai S, Bagchi A.

J Mech Behav Biomed Mater. 2018 Oct;86:375-389. doi: 10.1016/j.jmbbm.2018.06.031. Epub 2018 Jun 26.

PMID:
30015209
6.
7.

Postoperative seizures in meningioma patients: improving patient selection for antiepileptic drug therapy.

Islim AI, Ali A, Bagchi A, Ahmad MU, Mills SJ, Chavredakis E, Brodbelt AR, Jenkinson MD.

J Neurooncol. 2018 Oct;140(1):123-134. doi: 10.1007/s11060-018-2941-2. Epub 2018 Jun 29.

PMID:
29959695
8.

Follow the Voxel-A New Method for the Analysis of Regional Strain in Lung Injury.

Bagchi A, Vidal Melo MF.

Crit Care Med. 2018 Jun;46(6):1033-1035. doi: 10.1097/CCM.0000000000003109. No abstract available.

PMID:
29762413
9.

Intrinsic anti-inflammatory properties in the serum of two species of deep-diving seal.

Bagchi A, Batten AJ, Levin M, Allen KN, Fitzgerald ML, Hückstädt LA, Costa DP, Buys ES, Hindle AG.

J Exp Biol. 2018 Jul 9;221(Pt 13). pii: jeb178491. doi: 10.1242/jeb.178491.

PMID:
29748216
10.

Different roles of circular RNAs with protein coding potentials.

Bagchi A.

Biochem Biophys Res Commun. 2018 Jun 12;500(4):907-909. doi: 10.1016/j.bbrc.2018.04.190. Epub 2018 Apr 30.

PMID:
29704503
11.
12.

MicroRNA-425 and microRNA-155 cooperatively regulate atrial natriuretic peptide expression and cGMP production.

Vandenwijngaert S, Ledsky CD, Agha O, Wu C, Hu D, Bagchi A, Domian IJ, Buys ES, Newton-Cheh C, Bloch DB.

PLoS One. 2018 Apr 26;13(4):e0196697. doi: 10.1371/journal.pone.0196697. eCollection 2018.

13.

Alanine substitution mutations in the DNA binding region of a global staphylococcal virulence regulator affect its structure, function, and stability.

Mandal S, Ghosh S, Sinha D, Seal S, Mahapa A, Polley S, Saha D, Sau K, Bagchi A, Sau S.

Int J Biol Macromol. 2018 Jul 1;113:1221-1232. doi: 10.1016/j.ijbiomac.2018.03.045. Epub 2018 Mar 12.

PMID:
29545063
14.

Primary Small Intestinal Angiosarcoma: Epidemiology, Diagnosis and Treatment.

Nai Q, Ansari M, Liu J, Razjouyan H, Pak S, Tian Y, Khan R, Broder A, Bagchi A, Iyer V, Hamouda D, Islam M, Sen S, Yousif A, Hu M, Lou Y, Duhl J.

J Clin Med Res. 2018 Apr;10(4):294-301. doi: 10.14740/jocmr3153w. Epub 2018 Feb 18. Review.

15.

Functional attribution of LdISP, an endogenous serine protease inhibitor from Leishmania donovani in promoting infection.

Alam MN, Chakraborti S, Paik D, Bagchi A, Chakraborti T.

Biochimie. 2018 Apr;147:105-113. doi: 10.1016/j.biochi.2018.01.005. Epub 2018 Jan 31.

PMID:
29366936
16.

Mechanical ventilation mode and postoperative pulmonary complications - a reply.

Bagchi A, Rudolph MI, Eikermann M.

Anaesthesia. 2018 Feb;73(2):253-254. doi: 10.1111/anae.14204. No abstract available.

PMID:
29333710
17.

Transcriptomic analysis of gene signatures associated with sickle pain.

Paul JA, Aich A, Abrahante JE, Wang Y, LaRue RS, Rathe SK, Kalland K, Mittal A, Jha R, Peng F, Largaespada DA, Bagchi A, Gupta K.

Sci Data. 2017 May 16;4:170051. doi: 10.1038/sdata.2017.51.

18.

Characterization and detection of acceleration-induced cavitation in soft materials using a drop-tower-based integrated system.

Kang W, Chen Y, Bagchi A, O'Shaughnessy TJ.

Rev Sci Instrum. 2017 Dec;88(12):125113. doi: 10.1063/1.5000512.

PMID:
29289233
19.

Cavitation nucleation in gelatin: Experiment and mechanism.

Kang W, Adnan A, O'Shaughnessy T, Bagchi A.

Acta Biomater. 2018 Feb;67:295-306. doi: 10.1016/j.actbio.2017.11.030. Epub 2017 Dec 2.

PMID:
29191509
20.

Molecular Basis for Necitumumab Inhibition of EGFR Variants Associated with Acquired Cetuximab Resistance.

Bagchi A, Haidar JN, Eastman SW, Vieth M, Topper M, Iacolina MD, Walker JM, Forest A, Shen Y, Novosiadly RD, Ferguson KM.

Mol Cancer Ther. 2018 Feb;17(2):521-531. doi: 10.1158/1535-7163.MCT-17-0575. Epub 2017 Nov 20.

PMID:
29158469
21.

Structural Characterization of the Trimerization of TRAF6 Protein Through Molecular Dynamics Simulations.

Biswas R, Bagchi A.

Interdiscip Sci. 2017 Sep 11. doi: 10.1007/s12539-017-0259-y. [Epub ahead of print]

PMID:
28895065
22.

The association of postoperative pulmonary complications in 109,360 patients with pressure-controlled or volume-controlled ventilation.

Bagchi A, Rudolph MI, Ng PY, Timm FP, Long DR, Shaefi S, Ladha K, Vidal Melo MF, Eikermann M.

Anaesthesia. 2017 Nov;72(11):1334-1343. doi: 10.1111/anae.14039. Epub 2017 Sep 11.

PMID:
28891046
23.
24.

Vitamin C mitigates oxidative/nitrosative stress and inflammation in doxorubicin-induced cardiomyopathy.

Akolkar G, da Silva Dias D, Ayyappan P, Bagchi AK, Jassal DS, Salemi VMC, Irigoyen MC, De Angelis K, Singal PK.

Am J Physiol Heart Circ Physiol. 2017 Oct 1;313(4):H795-H809. doi: 10.1152/ajpheart.00253.2017. Epub 2017 Jul 14.

25.

Elucidation of the molecular mechanism of heat shock proteins and its correlation with K722Q mutations in Lon protease.

Bhattacharjee S, Dasgupta R, Bagchi A.

Biosystems. 2017 Sep;159:12-22. doi: 10.1016/j.biosystems.2017.06.002. Epub 2017 Jul 1.

PMID:
28676239
26.

Does certificate of need law enhance competition in inpatient care market? An empirical analysis.

Paul JA, Ni H, Bagchi A.

Health Econ Policy Law. 2017 Jun 29:1-21. doi: 10.1017/S1744133117000184. [Epub ahead of print]

PMID:
28660840
27.

A structural perspective on the interactions of TRAF6 and Basigin during the onset of melanoma: A molecular dynamics simulation study.

Biswas R, Ghosh S, Bagchi A.

J Mol Recognit. 2017 Nov;30(11). doi: 10.1002/jmr.2643. Epub 2017 Jun 14.

PMID:
28612997
28.

Mice lacking the chromodomain helicase DNA-binding 5 chromatin remodeler display autism-like characteristics.

Pisansky MT, Young AE, O'Connor MB, Gottesman II, Bagchi A, Gewirtz JC.

Transl Psychiatry. 2017 Jun 13;7(6):e1152. doi: 10.1038/tp.2017.111.

29.

Quantification and Measurement of Changes in Anxiety Level in Preschool Children and Their Mothers through Multiple-visit Dental Treatment.

Bagchi A, Lahiri B, Jalaluddin M, Kumar G, Das S, Dhull KS.

J Int Soc Prev Community Dent. 2017 May-Jun;7(3):125-130. doi: 10.4103/jispcd.JISPCD_108_17. Epub 2017 May 22.

30.

Hepatic Capillariasis- Drug Targets.

Dubey A, Bagchi A, Sharma D, Dey A, Nandy K, Sharma R.

Infect Disord Drug Targets. 2018;18(1):3-10. doi: 10.2174/1871526517666170427124254.

PMID:
28460612
31.

Toll-like receptor 2 dominance over Toll-like receptor 4 in stressful conditions for its detrimental role in the heart.

Bagchi AK, Akolkar G, Mandal S, Ayyappan P, Yang X, Singal PK.

Am J Physiol Heart Circ Physiol. 2017 Jun 1;312(6):H1238-H1247. doi: 10.1152/ajpheart.00800.2016. Epub 2017 Apr 21.

32.

Iron Loading Exaggerates the Inflammatory Response to the Toll-like Receptor 4 Ligand Lipopolysaccharide by Altering Mitochondrial Homeostasis.

Hoeft K, Bloch DB, Graw JA, Malhotra R, Ichinose F, Bagchi A.

Anesthesiology. 2017 Jul;127(1):121-135. doi: 10.1097/ALN.0000000000001653.

33.

Correlation of carotid blood flow and corrected carotid flow time with invasive cardiac output measurements.

Ma IWY, Caplin JD, Azad A, Wilson C, Fifer MA, Bagchi A, Liteplo AS, Noble VE.

Crit Ultrasound J. 2017 Dec;9(1):10. doi: 10.1186/s13089-017-0065-0. Epub 2017 Apr 20.

34.

A comprehensive computational study on pathogenic mis-sense mutations spanning the RING2 and REP domains of Parkin protein.

Biswas R, Bagchi A.

Gene. 2017 Apr 30;610:49-58. doi: 10.1016/j.gene.2017.02.008. Epub 2017 Feb 9.

PMID:
28189762
35.

Excessive consumption of fructose causes cardiometabolic dysfunctions through oxidative stress and inflammation.

Bernardes N, Ayyappan P, De Angelis K, Bagchi A, Akolkar G, da Silva Dias D, Belló-Klein A, Singal PK.

Can J Physiol Pharmacol. 2017 Oct;95(10):1078-1090. doi: 10.1139/cjpp-2016-0663. Epub 2017 Feb 10. Review.

PMID:
28187269
36.

Insights from the docked DoxDA Model with Thiosulphate.

Ray S, Bagchi A.

Bioinformation. 2016 Apr 10;12(2):69-73. doi: 10.6026/97320630012069. eCollection 2016.

37.

Doxorubicin-induced nitrosative stress is mitigated by vitamin C via the modulation of nitric oxide synthases.

Akolkar G, Bagchi AK, Ayyappan P, Jassal DS, Singal PK.

Am J Physiol Cell Physiol. 2017 Apr 1;312(4):C418-C427. doi: 10.1152/ajpcell.00356.2016. Epub 2017 Jan 18.

38.

Structural study of the effects of mutations in proteins to identify the molecular basis of the loss of local structural fluidity leading to the onset of autoimmune diseases.

Ali A, Ghosh S, Bagchi A.

Biochem Biophys Res Commun. 2017 Feb 26;484(1):165-170. doi: 10.1016/j.bbrc.2017.01.048. Epub 2017 Jan 11.

PMID:
28088516
39.

Structural Insight into the Gene Expression Profiling of the hcn Operon in Pseudomonas aeruginosa.

Chowdhury N, Bagchi A.

Appl Biochem Biotechnol. 2017 Jul;182(3):1144-1157. doi: 10.1007/s12010-016-2388-x. Epub 2017 Jan 7.

PMID:
28064429
41.

Differentiated Smooth Muscle Cells Generate a Subpopulation of Resident Vascular Progenitor Cells in the Adventitia Regulated by Klf4.

Majesky MW, Horita H, Ostriker A, Lu S, Regan JN, Bagchi A, Dong XR, Poczobutt J, Nemenoff RA, Weiser-Evans MC.

Circ Res. 2017 Jan 20;120(2):296-311. doi: 10.1161/CIRCRESAHA.116.309322. Epub 2016 Nov 9.

42.

Expression of Noggin and Gremlin1 and its implications in fine-tuning BMP activities in mouse cartilage tissues.

Yu X, Kawakami H, Tahara N, Olmer M, Hayashi S, Akiyama R, Bagchi A, Lotz M, Kawakami Y.

J Orthop Res. 2017 Aug;35(8):1671-1682. doi: 10.1002/jor.23463. Epub 2016 Nov 8.

43.

In-silico structural analysis of E509K mutation in LARGE and T192M mutation in Alpha Dystroglycan in the inhibition of glycosylation of Alpha Dystroglycan by LARGE.

Bhattacharya S, Das A, Bagchi A.

Comput Biol Chem. 2016 Oct;64:313-321. doi: 10.1016/j.compbiolchem.2016.07.005. Epub 2016 Jul 16.

PMID:
27565399
44.

Periampullary gastrointestinal stromal tumor presenting with obstructive jaundice.

Bagchi A, Mahamine K, Nundy S, Kathuria P, Sahu P, Kumar S, Kumar N, Kar P.

Trop Gastroenterol. 2015 Oct-Dec;36(4):275-7. No abstract available.

PMID:
27509712
45.

Difference in DNA-binding abilities of Fur-homolog DNA binding protein from Neisseria gonorrhoeae.

Bagchi A.

Microb Pathog. 2016 Oct;99:62-67. doi: 10.1016/j.micpath.2016.08.007. Epub 2016 Aug 6.

PMID:
27506628
46.

Identification of a Novel Complex between the Nucleoprotein and PA(1-27) of Influenza A Virus Polymerase.

Vidic J, Noiray M, Bagchi A, Slama-Schwok A.

Biochemistry. 2016 Aug 9;55(31):4259-62. doi: 10.1021/acs.biochem.6b00514. Epub 2016 Jul 28.

PMID:
27431776
47.

Calcification of Vascular Smooth Muscle Cells and Imaging of Aortic Calcification and Inflammation.

O'Rourke C, Shelton G, Hutcheson JD, Burke MF, Martyn T, Thayer TE, Shakartzi HR, Buswell MD, Tainsh RE, Yu B, Bagchi A, Rhee DK, Wu C, Derwall M, Buys ES, Yu PB, Bloch KD, Aikawa E, Bloch DB, Malhotra R.

J Vis Exp. 2016 May 31;(111). doi: 10.3791/54017.

48.

Thiamine as a neuroprotective agent after cardiac arrest.

Ikeda K, Liu X, Kida K, Marutani E, Hirai S, Sakaguchi M, Andersen LW, Bagchi A, Cocchi MN, Berg KM, Ichinose F, Donnino MW.

Resuscitation. 2016 Aug;105:138-44. doi: 10.1016/j.resuscitation.2016.04.024. Epub 2016 May 13.

PMID:
27185216
49.

Comparative Analyses of the Relative Effects of Various Mutations in Major Histocompatibility Complex I-a Way to Predict Protein-Protein Interactions.

Ali A, Biswas R, Bhattacharjee S, Nath P, Pan S, Bagchi A.

Appl Biochem Biotechnol. 2016 Sep;180(1):152-64. doi: 10.1007/s12010-016-2090-z. Epub 2016 Apr 28.

PMID:
27125960
50.

Insights from the Molecular Dynamics Simulation of Cellobiohydrolase Cel6A Molecular Structural Model from Aspergillus fumigatus NITDGPKA3.

Dodda SR, Sarkar N, Aikat K, Krishnaraj NR, Bhattacharjee S, Bagchi A, Mukhopadhyay SS.

Comb Chem High Throughput Screen. 2016;19(4):325-33.

PMID:
27109185

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