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Items: 37


PLANET-SNP pipeline: PLants based ANnotation and Establishment of True SNP pipeline.

Bhardwaj A, Bag SK.

Genomics. 2019 Sep;111(5):1066-1077. doi: 10.1016/j.ygeno.2018.07.001. Epub 2018 Jul 3.


Detailed characterisation of the tuberculosis epidemic in Western Sydney: a descriptive epidemiological study.

Norton S, Bag SK, Cho JG, Heron N, Assareh H, Pavaresh L, Corbett S, Marais BJ.

ERJ Open Res. 2019 Sep 10;5(3). pii: 00211-2018. doi: 10.1183/23120541.00211-2018. eCollection 2019 Jul.


Monitoring tuberculosis contact tracing outcomes in Western Sydney, Australia.

Parvaresh L, Bag SK, Cho JG, Heron N, Assareh H, Norton S, Corbett S, Marais BJ.

BMJ Open Respir Res. 2018 Oct 25;5(1):e000341. doi: 10.1136/bmjresp-2018-000341. eCollection 2018.


Probable epidemic Mycoplasma pneumoniae disease activity in metropolitan Sydney, 2015: combining surveillance data to cross-validate signal detection.

Britton PN, Bag SK, Booy R, Sharpe C, Owen KB, Zhao J, Irwin MJ, Jones C.

Commun Dis Intell Q Rep. 2017 Dec 1;41(4):E295-E307.


Epidemiology and whole genome sequencing of an ongoing point-source Salmonella Agona outbreak associated with sushi consumption in western Sydney, Australia 2015.

Thompson CK, Wang Q, Bag SK, Franklin N, Shadbolt CT, Howard P, Fearnley EJ, Quinn HE, Sintchenko V, Hope KG.

Epidemiol Infect. 2017 Jul;145(10):2062-2071. doi: 10.1017/S0950268817000693. Epub 2017 May 2.


Genome-wide analysis of rice dehydrin gene family: Its evolutionary conservedness and expression pattern in response to PEG induced dehydration stress.

Verma G, Dhar YV, Srivastava D, Kidwai M, Chauhan PS, Bag SK, Asif MH, Chakrabarty D.

PLoS One. 2017 May 1;12(5):e0176399. doi: 10.1371/journal.pone.0176399. eCollection 2017.


Chemometric Based Identification and Validation of Specific Chemical Markers for Geographical, Seasonal and Gender Variations in Tinospora cordifolia Stem using HPLC-ESI-QTOF-MS Analysis.

Bajpai V, Kumar S, Singh A, Singh J, Negi MPS, Bag SK, Kumar N, Konwar R, Kumar B.

Phytochem Anal. 2017 Jul;28(4):277-288. doi: 10.1002/pca.2673. Epub 2017 Jan 23.


In Silico identification of SNP diversity in cultivated and wild tomato species: insight from molecular simulations.

Bhardwaj A, Dhar YV, Asif MH, Bag SK.

Sci Rep. 2016 Dec 8;6:38715. doi: 10.1038/srep38715.


Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.

Indoliya Y, Tiwari P, Chauhan AS, Goel R, Shri M, Bag SK, Chakrabarty D.

Sci Rep. 2016 Mar 14;6:23050. doi: 10.1038/srep23050.


Genome-wide analysis of the AP2/ERF family in Musa species reveals divergence and neofunctionalisation during evolution.

Lakhwani D, Pandey A, Dhar YV, Bag SK, Trivedi PK, Asif MH.

Sci Rep. 2016 Jan 6;6:18878. doi: 10.1038/srep18878.


PanCoreGen - Profiling, detecting, annotating protein-coding genes in microbial genomes.

Paul S, Bhardwaj A, Bag SK, Sokurenko EV, Chattopadhyay S.

Genomics. 2015 Dec;106(6):367-72. doi: 10.1016/j.ygeno.2015.10.001. Epub 2015 Oct 9.


Australian vaccine preventable disease epidemiological review series: mumps 2008-2012.

Bag SK, Dey A, Wang H, Beard F.

Commun Dis Intell Q Rep. 2015 Mar 31;39(1):E10-8. Review.


Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.


Comparative interactions of withanolides and sterols with two members of sterol glycosyltransferases from Withania somnifera.

Pandey V, Dhar YV, Gupta P, Bag SK, Atri N, Asif MH, Trivedi PK, Misra P.

BMC Bioinformatics. 2015 Apr 16;16:120. doi: 10.1186/s12859-015-0563-7.


A comparative study between Truview(PCD) laryngoscope and Macintosh laryngoscope in viewing glottic opening and ease of intubation: A crossover study.

Bag SK, Kumar VR, Krishnaveni N, Ravishankar M, Velraj J, Aruloli M.

Anesth Essays Res. 2014 Sep-Dec;8(3):372-6. doi: 10.4103/0259-1162.143152.


Global nucleosome positioning regulates salicylic acid mediated transcription in Arabidopsis thaliana.

Singh M, Bag SK, Bhardwaj A, Ranjan A, Mantri S, Nigam D, Sharma YK, Sawant SV.

BMC Plant Biol. 2015 Jan 21;15:13. doi: 10.1186/s12870-014-0404-2.


Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process.

Asif MH, Lakhwani D, Pathak S, Gupta P, Bag SK, Nath P, Trivedi PK.

BMC Plant Biol. 2014 Dec 2;14:316. doi: 10.1186/s12870-014-0316-1.


Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root.

Dubey S, Shri M, Misra P, Lakhwani D, Bag SK, Asif MH, Trivedi PK, Tripathi RD, Chakrabarty D.

Funct Integr Genomics. 2014 Jun;14(2):401-17. doi: 10.1007/s10142-014-0361-8. Epub 2014 Feb 20.


Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening.

Asif MH, Lakhwani D, Pathak S, Bhambhani S, Bag SK, Trivedi PK.

Funct Integr Genomics. 2014 Mar;14(1):161-75. doi: 10.1007/s10142-013-0349-9. Epub 2013 Nov 26.


Distinct role of core promoter architecture in regulation of light-mediated responses in plant genes.

Srivastava R, Rai KM, Srivastava M, Kumar V, Pandey B, Singh SP, Bag SK, Singh BD, Tuli R, Sawant SV.

Mol Plant. 2014 Apr;7(4):626-41. doi: 10.1093/mp/sst146. Epub 2013 Oct 31.


Insights from the draft genome of Paenibacillus lentimorbus NRRL B-30488, a promising plant growth promoting bacterium.

Chaudhry V, Chauhan PS, Mishra A, Goel R, Asif MH, Mantri SS, Bag SK, Singh SK, Sawant SV, Nautiyal CS.

J Biotechnol. 2013 Dec;168(4):737-8. doi: 10.1016/j.jbiotec.2013.10.010. Epub 2013 Oct 16.


Large-scale resource development in Gossypium hirsutum L. by 454 sequencing of genic-enriched libraries from six diverse genotypes.

Rai KM, Singh SK, Bhardwaj A, Kumar V, Lakhwani D, Srivastava A, Jena SN, Yadav HK, Bag SK, Sawant SV.

Plant Biotechnol J. 2013 Oct;11(8):953-63. doi: 10.1111/pbi.12088. Epub 2013 Jun 19.


Comparative transcriptome analysis of Gossypium hirsutum L. in response to sap sucking insects: aphid and whitefly.

Dubey NK, Goel R, Ranjan A, Idris A, Singh SK, Bag SK, Chandrashekar K, Pandey KD, Singh PK, Sawant SV.

BMC Genomics. 2013 Apr 11;14:241. doi: 10.1186/1471-2164-14-241.


Assessment of airway the MOUTH concept.

Parthasarathy S, Bag SK, Krishnaveni N.

J Anaesthesiol Clin Pharmacol. 2012 Oct;28(4):539. doi: 10.4103/0970-9185.101958. No abstract available.


Use of human urine in phytoplankton production as a tool for ecological sanitation.

Jana BB, Rana S, Bag SK.

Water Sci Technol. 2012;65(8):1350-6. doi: 10.2166/wst.2012.044.


Development and characterization of genomic and expressed SSRs for levant cotton (Gossypium herbaceum L.).

Jena SN, Srivastava A, Rai KM, Ranjan A, Singh SK, Nisar T, Srivastava M, Bag SK, Mantri S, Asif MH, Yadav HK, Tuli R, Sawant SV.

Theor Appl Genet. 2012 Feb;124(3):565-76. doi: 10.1007/s00122-011-1729-y. Epub 2011 Oct 30.


Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress.

Dubey S, Misra P, Dwivedi S, Chatterjee S, Bag SK, Mantri S, Asif MH, Rai A, Kumar S, Shri M, Tripathi P, Tripathi RD, Trivedi PK, Chakrabarty D, Tuli R.

BMC Genomics. 2010 Nov 20;11:648. doi: 10.1186/1471-2164-11-648.


Universal plant DNA barcode loci may not work in complex groups: a case study with Indian berberis species.

Roy S, Tyagi A, Shukla V, Kumar A, Singh UM, Chaudhary LB, Datt B, Bag SK, Singh PK, Nair NK, Husain T, Tuli R.

PLoS One. 2010 Oct 27;5(10):e13674. doi: 10.1371/journal.pone.0013674.


Indian genetic disease database.

Pradhan S, Sengupta M, Dutta A, Bhattacharyya K, Bag SK, Dutta C, Ray K.

Nucleic Acids Res. 2011 Jan;39(Database issue):D933-8. doi: 10.1093/nar/gkq1025. Epub 2010 Oct 30.


Oligonucleotide frequencies of barcoding loci can discriminate species across kingdoms.

Tyagi A, Bag SK, Shukla V, Roy S, Tuli R.

PLoS One. 2010 Aug 20;5(8):e12330. doi: 10.1371/journal.pone.0012330.


Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus.

Paul S, Dutta A, Bag SK, Das S, Dutta C.

BMC Genomics. 2010 Feb 10;11:103. doi: 10.1186/1471-2164-11-103.


Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes.

Paul S, Bag SK, Das S, Harvill ET, Dutta C.

Genome Biol. 2008 Apr 9;9(4):R70. doi: 10.1186/gb-2008-9-4-r70.


Fibrous dysplasia in two siblings.

Sarkar AK, Ghosh AK, Chowdhury SN, Biswas SK, Bag SK.

Indian J Pediatr. 1993 Mar-Apr;60(2):301-5. No abstract available.


Glomerulonephritis in congenital syphilis.

Sarkar AK, Bag SK, Sarkar S, Ganguly S, Yonzan R, Halder AK.

Indian Pediatr. 1992 Dec;29(12):1563-5. No abstract available.


Acro-osteolysis of phalanges in a case of cystic fibrosis.

Sarkar AK, Bag SK, Biswas SK, Saha SG.

Indian J Pediatr. 1992 Sep-Oct;59(5):636-9. No abstract available.


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