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Items: 26

1.

Network modelling unravels mechanisms of crosstalk between ethylene and salicylate signalling in potato.

Ramšak Ž, Coll A, Stare T, Tzfadia O, Baebler Š, Van de Peer Y, Gruden K.

Plant Physiol. 2018 Jun 22. pii: pp.00450.2018. doi: 10.1104/pp.18.00450. [Epub ahead of print]

2.

Cell Death Is Not Sufficient for the Restriction of Potato Virus Y Spread in Hypersensitive Response-Conferred Resistance in Potato.

Lukan T, Baebler Š, Pompe-Novak M, Guček K, Zagorščak M, Coll A, Gruden K.

Front Plant Sci. 2018 Feb 15;9:168. doi: 10.3389/fpls.2018.00168. eCollection 2018.

3.

Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection.

Križnik M, Petek M, Dobnik D, Ramšak Ž, Baebler Š, Pollmann S, Kreuze JF, Žel J, Gruden K.

Front Plant Sci. 2017 Dec 22;8:2192. doi: 10.3389/fpls.2017.02192. eCollection 2017.

4.

Plant X-tender: An extension of the AssemblX system for the assembly and expression of multigene constructs in plants.

Lukan T, Machens F, Coll A, Baebler Š, Messerschmidt K, Gruden K.

PLoS One. 2018 Jan 4;13(1):e0190526. doi: 10.1371/journal.pone.0190526. eCollection 2018.

5.

quantGenius: implementation of a decision support system for qPCR-based gene quantification.

Baebler Š, Svalina M, Petek M, Stare K, Rotter A, Pompe-Novak M, Gruden K.

BMC Bioinformatics. 2017 May 25;18(1):276. doi: 10.1186/s12859-017-1688-7.

6.

Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea.

Karničar K, Drobnak I, Petek M, Magdevska V, Horvat J, Vidmar R, Baebler Š, Rotter A, Jamnik P, Fujs Š, Turk B, Fonovič M, Gruden K, Kosec G, Petković H.

Microb Cell Fact. 2016 Jun 3;15:93. doi: 10.1186/s12934-016-0496-5.

7.

Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones.

Jamnikar U, Nikolic P, Belic A, Blas M, Gaser D, Francky A, Laux H, Blejec A, Baebler S, Gruden K.

BMC Biotechnol. 2015 Oct 23;15:98. doi: 10.1186/s12896-015-0218-9.

8.

Roles of the crotonyl-CoA carboxylase/reductase homologues in acetate assimilation and biosynthesis of immunosuppressant FK506 in Streptomyces tsukubaensis.

Blažič M, Kosec G, Baebler Š, Gruden K, Petković H.

Microb Cell Fact. 2015 Oct 14;14:164. doi: 10.1186/s12934-015-0352-z.

9.

Influence of selected anti-cancer drugs on the induction of DNA double-strand breaks and changes in gene expression in human hepatoma HepG2 cells.

Novak M, Žegura B, Baebler Š, Štern A, Rotter A, Stare K, Filipič M.

Environ Sci Pollut Res Int. 2016 Aug;23(15):14751-61. doi: 10.1007/s11356-015-5420-8. Epub 2015 Sep 22.

PMID:
26392091
10.

Transcriptomic variation between different Chinese hamster ovary cell lines.

Blas M, Francky A, Jamnikar U, Gaser D, Baebler Š, Blejec A, Gruden K.

Biotechnol Lett. 2015 Sep;37(9):1737-45. doi: 10.1007/s10529-015-1850-0. Epub 2015 May 13.

PMID:
25967036
11.

Assessment of toxicity and genotoxicity of low doses of 5-fluorouracil in zebrafish (Danio rerio) two-generation study.

Kovács R, Csenki Z, Bakos K, Urbányi B, Horváth Á, Garaj-Vrhovac V, Gajski G, Gerić M, Negreira N, López de Alda M, Barceló D, Heath E, Kosjek T, Žegura B, Novak M, Zajc I, Baebler Š, Rotter A, Ramšak Ž, Filipič M.

Water Res. 2015 Jun 15;77:201-212. doi: 10.1016/j.watres.2015.03.025. Epub 2015 Apr 3.

PMID:
25889180
12.

Potato virus Y infection hinders potato defence response and renders plants more vulnerable to Colorado potato beetle attack.

Petek M, Rotter A, Kogovšek P, Baebler S, Mithöfer A, Gruden K.

Mol Ecol. 2014 Nov;23(21):5378-91. doi: 10.1111/mec.12932. Epub 2014 Oct 9.

13.

Involvement of potato (Solanum tuberosum L.) MKK6 in response to potato virus Y.

Lazar A, Coll A, Dobnik D, Baebler S, Bedina-Zavec A, Zel J, Gruden K.

PLoS One. 2014 Aug 11;9(8):e104553. doi: 10.1371/journal.pone.0104553. eCollection 2014.

14.

Salicylic acid is an indispensable component of the Ny-1 resistance-gene-mediated response against Potato virus Y infection in potato.

Baebler Š, Witek K, Petek M, Stare K, Tušek-Žnidarič M, Pompe-Novak M, Renaut J, Szajko K, Strzelczyk-Żyta D, Marczewski W, Morgiewicz K, Gruden K, Hennig J.

J Exp Bot. 2014 Mar;65(4):1095-109. doi: 10.1093/jxb/ert447. Epub 2014 Jan 13.

15.

SACE_5599, a putative regulatory protein, is involved in morphological differentiation and erythromycin production in Saccharopolyspora erythraea.

Kirm B, Magdevska V, Tome M, Horvat M, Karničar K, Petek M, Vidmar R, Baebler S, Jamnik P, Fujs Š, Horvat J, Fonovič M, Turk B, Gruden K, Petković H, Kosec G.

Microb Cell Fact. 2013 Dec 17;12:126. doi: 10.1186/1475-2859-12-126.

16.

β-1,3-glucanase class III promotes spread of PVYNTN and improves in planta protein production.

Dobnik D, Baebler S, Kogovšek P, Pompe-Novak M, Stebih D, Panter G, Janež N, Morisset D, Zel J, Gruden K.

Plant Biotechnol Rep. 2013;7:547-555. Epub 2013 Aug 27.

17.

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.

Ramsak Ž, Baebler Š, Rotter A, Korbar M, Mozetic I, Usadel B, Gruden K.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1167-75. doi: 10.1093/nar/gkt1056. Epub 2013 Nov 4.

18.

Gene Expression Profiling of Recombinant Protein Producing E. coli at Suboptimal Growth Temperature.

Mahnič M, Baebler S, Blejec A, Jalen S, Gruden K, Menart V, Jevševar S.

Acta Chim Slov. 2012 Mar;59(1):59-69.

PMID:
24061173
19.

Dynamics of responses in compatible potato-Potato virus Y interaction are modulated by salicylic acid.

Baebler Š, Stare K, Kovač M, Blejec A, Prezelj N, Stare T, Kogovšek P, Pompe-Novak M, Rosahl S, Ravnikar M, Gruden K.

PLoS One. 2011;6(12):e29009. doi: 10.1371/journal.pone.0029009. Epub 2011 Dec 14.

20.

Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome: modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation.

Petek M, Baebler S, Kuzman D, Rotter A, Podlesek Z, Gruden K, Ravnikar M, Urleb U.

BMC Microbiol. 2010 Jun 1;10:159. doi: 10.1186/1471-2180-10-159.

21.

Gene expression data analysis using closed item set mining for labeled data.

Rotter A, Novak PK, Baebler S, Toplak N, Blejec A, Lavrac N, Gruden K.

OMICS. 2010 Apr;14(2):177-86. doi: 10.1089/omi.2009.0126.

22.

PVY(NTN) elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation.

Baebler S, Krecic-Stres H, Rotter A, Kogovsek P, Cankar K, Kok EJ, Gruden K, Kovac M, Zel J, Pompe-Novak M, Ravnikar M.

Mol Plant Pathol. 2009 Mar;10(2):263-75. doi: 10.1111/j.1364-3703.2008.00530.x.

PMID:
19236574
23.

Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing.

Rotter A, Hren M, Baebler S, Blejec A, Gruden K.

OMICS. 2008 Sep;12(3):171-82. doi: 10.1089/omi.2008.0032.

24.

Expression microarrays in plant-virus interaction.

Gruden K, Pompe-Novak M, Baebler S, Krecic-Stres H, Toplak N, Hren M, Kogovsek P, Gow L, Foster GD, Boonham N, Ravnikar M.

Methods Mol Biol. 2008;451:583-613. doi: 10.1007/978-1-59745-102-4_40.

PMID:
18370283
25.

Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species.

Rotter A, Usadel B, Baebler S, Stitt M, Gruden K.

Plant Methods. 2007 Sep 4;3:10.

26.

Jasmonic acid stimulates taxane production in cell suspension culture of yew (Taxus x media).

Baebler S, Camloh M, Kovac M, Ravnikar M, Zel J.

Planta Med. 2002 May;68(5):475-6.

PMID:
12058334

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