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Items: 1 to 50 of 184

1.

Description of soybean aphid (Aphis glycines Matsumura) mitochondrial genome and comparative mitogenomics of Aphididae (Hemiptera: Sternorrhyncha).

Song H, Donthu RK, Hall R, Hon L, Weber E, Badger JH, Giordano R.

Insect Biochem Mol Biol. 2019 Aug 15:103208. doi: 10.1016/j.ibmb.2019.103208. [Epub ahead of print]

PMID:
31422150
2.

Laboratory mice born to wild mice have natural microbiota and model human immune responses.

Rosshart SP, Herz J, Vassallo BG, Hunter A, Wall MK, Badger JH, McCulloch JA, Anastasakis DG, Sarshad AA, Leonardi I, Collins N, Blatter JA, Han SJ, Tamoutounour S, Potapova S, Foster St Claire MB, Yuan W, Sen SK, Dreier MS, Hild B, Hafner M, Wang D, Iliev ID, Belkaid Y, Trinchieri G, Rehermann B.

Science. 2019 Aug 2;365(6452). pii: eaaw4361. doi: 10.1126/science.aaw4361. Epub 2019 Aug 1.

PMID:
31371577
3.

Electrical stimulation devices for the prevention of venous thromboembolism: Preliminary studies of physiological efficacy and user satisfaction.

Badger J, Taylor P, Papworth N, Swain I.

J Rehabil Assist Technol Eng. 2018 Sep 25;5:2055668318800218. doi: 10.1177/2055668318800218. eCollection 2018 Jan-Dec.

4.

Neurolastin, a dynamin family GTPase, translocates to mitochondria upon neuronal stress and alters mitochondrial morphology in vivo.

Lomash RM, Petralia RS, Holtzclaw LA, Tsuda MC, Wang YX, Badger JD 2nd, Cameron HA, Youle RJ, Roche KW.

J Biol Chem. 2019 Jul 26;294(30):11498-11512. doi: 10.1074/jbc.RA118.007245. Epub 2019 Jun 7.

PMID:
31177092
5.

PSD-95 binding dynamically regulates NLGN1 trafficking and function.

Jeong J, Pandey S, Li Y, Badger JD 2nd, Lu W, Roche KW.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):12035-12044. doi: 10.1073/pnas.1821775116. Epub 2019 May 28.

PMID:
31138690
6.

Machine learning for phenotyping opioid overdose events.

Badger J, LaRose E, Mayer J, Bashiri F, Page D, Peissig P.

J Biomed Inform. 2019 Jun;94:103185. doi: 10.1016/j.jbi.2019.103185. Epub 2019 Apr 25.

PMID:
31028874
7.

Long peripheral catheters for deep arm vein venous access: A systematic review of complications.

Badger J.

Heart Lung. 2019 May - Jun;48(3):222-225. doi: 10.1016/j.hrtlng.2019.01.002. Epub 2019 Jan 17. Review.

PMID:
30660325
8.

An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis.

Fatkhullina AR, Peshkova IO, Dzutsev A, Aghayev T, McCulloch JA, Thovarai V, Badger JH, Vats R, Sundd P, Tang HY, Kossenkov AV, Hazen SL, Trinchieri G, Grivennikov SI, Koltsova EK.

Immunity. 2018 Nov 20;49(5):943-957.e9. doi: 10.1016/j.immuni.2018.09.011. Epub 2018 Oct 30.

PMID:
30389414
9.

Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease.

Kleiman RS, LaRose ER, Badger JC, Page D, Caldwell MD, Clay JA, Peissig PL.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:139-146. eCollection 2018.

10.

Dermatology Medical Education: A Multicenter Survey Study of the Undergraduate Perspective of the Dermatology Clinical Clerkship.

Davari P, Millsop JW, Johnson MAN, Takahashi SR, Peng DH, Badger J, Bahr BA, Shinkai K, Li CS, Fazel N.

Dermatol Online J. 2017 Dec 15;23(12). pii: 13030/qt8bs7f6d5.

11.

Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure.

P Tafti A, Badger J, LaRose E, Shirzadi E, Mahnke A, Mayer J, Ye Z, Page D, Peissig P.

JMIR Med Inform. 2017 Dec 8;5(4):e51. doi: 10.2196/medinform.9170.

12.

What Can We Learn from Wide-Angle Solution Scattering?

Wang Y, Zhou H, Onuk E, Badger J, Makowski L.

Adv Exp Med Biol. 2017;1009:131-147. doi: 10.1007/978-981-10-6038-0_8.

PMID:
29218557
13.

The safety of electrical stimulation in patients with pacemakers and implantable cardioverter defibrillators: A systematic review.

Badger J, Taylor P, Swain I.

J Rehabil Assist Technol Eng. 2017 Dec 5;4:2055668317745498. doi: 10.1177/2055668317745498. eCollection 2017 Jan-Dec.

14.

Efficient large-scale wind turbine deployment can meet global electricity generation needs.

Badger J, Volker PJH.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E8945. doi: 10.1073/pnas.1708350114. Epub 2017 Oct 12. No abstract available.

15.

Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance.

Rosshart SP, Vassallo BG, Angeletti D, Hutchinson DS, Morgan AP, Takeda K, Hickman HD, McCulloch JA, Badger JH, Ajami NJ, Trinchieri G, Pardo-Manuel de Villena F, Yewdell JW, Rehermann B.

Cell. 2017 Nov 16;171(5):1015-1028.e13. doi: 10.1016/j.cell.2017.09.016. Epub 2017 Oct 19.

16.

To Continue or to Withhold Opioid Analgesics? An Ethical Dilemma Involving a 63-year-old Cancer Patient Who 'Broke the Pain Contract'.

Lemme N, Leyva B, Occhiogrosso R, Seol Y, Badger JM, Mannix M.

R I Med J (2013). 2017 Oct 2;100(10):26-28.

PMID:
28968617
17.

Revealing hidden talents: The development, use, and benefit of VESPARCH.

Badger JR, Mellanby J.

Br J Educ Psychol. 2018 Sep;88(3):380-395. doi: 10.1111/bjep.12189. Epub 2017 Sep 14.

PMID:
28905355
18.

Effects of Catalytic Action and Ligand Binding on Conformational Ensembles of Adenylate Kinase.

Onuk E, Badger J, Wang YJ, Bardhan J, Chishti Y, Akcakaya M, Brooks DH, Erdogmus D, Minh DDL, Makowski L.

Biochemistry. 2017 Aug 29;56(34):4559-4567. doi: 10.1021/acs.biochem.7b00351. Epub 2017 Aug 16.

PMID:
28767234
19.

Structure of Amorphous Selenium by 2D 77 Se NMR Spectroscopy: An End to the Dilemma of Chain versus Ring.

Marple M, Badger J, Hung I, Gan Z, Kovnir K, Sen S.

Angew Chem Int Ed Engl. 2017 Aug 7;56(33):9777-9781. doi: 10.1002/anie.201704323. Epub 2017 Jul 17.

PMID:
28649806
20.

Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation.

Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE.

PLoS Genet. 2017 Mar 29;13(3):e1006688. doi: 10.1371/journal.pgen.1006688. eCollection 2017 Mar.

21.

A Rare Variant Identified Within the GluN2B C-Terminus in a Patient with Autism Affects NMDA Receptor Surface Expression and Spine Density.

Liu S, Zhou L, Yuan H, Vieira M, Sanz-Clemente A, Badger JD 2nd, Lu W, Traynelis SF, Roche KW.

J Neurosci. 2017 Apr 12;37(15):4093-4102. doi: 10.1523/JNEUROSCI.0827-16.2017. Epub 2017 Mar 10.

22.

The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses.

Zeigler Allen L, McCrow JP, Ininbergs K, Dupont CL, Badger JH, Hoffman JM, Ekman M, Allen AE, Bergman B, Venter JC.

mSystems. 2017 Feb 14;2(1). pii: e00125-16. doi: 10.1128/mSystems.00125-16. eCollection 2017 Jan-Feb.

23.

Microbes and Cancer.

Dzutsev A, Badger JH, Perez-Chanona E, Roy S, Salcedo R, Smith CK, Trinchieri G.

Annu Rev Immunol. 2017 Apr 26;35:199-228. doi: 10.1146/annurev-immunol-051116-052133. Epub 2017 Jan 30. Review.

PMID:
28142322
24.

Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation.

Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE.

PLoS Genet. 2016 Dec 14;12(12):e1006490. doi: 10.1371/journal.pgen.1006490. eCollection 2016 Dec. Erratum in: PLoS Genet. 2017 Mar 29;13(3):e1006688.

25.

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.

Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS.

Elife. 2016 Nov 28;5. pii: e19090. doi: 10.7554/eLife.19090.

26.

Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance.

Rushton PS, Olek AT, Makowski L, Badger J, Steussy CN, Carpita NC, Stauffacher CV.

Plant Physiol. 2017 Jan;173(1):482-494. doi: 10.1104/pp.16.00739. Epub 2016 Nov 22.

27.

c-Abl Tyrosine Kinase Adopts Multiple Active Conformational States in Solution.

Badger J, Grover P, Shi H, Panjarian SB, Engen JR, Smithgall TE, Makowski L.

Biochemistry. 2016 Jun 14;55(23):3251-60. doi: 10.1021/acs.biochem.6b00202. Epub 2016 Jun 3.

28.

ER Stress and Autophagic Perturbations Lead to Elevated Extracellular α-Synuclein in GBA-N370S Parkinson's iPSC-Derived Dopamine Neurons.

Fernandes HJ, Hartfield EM, Christian HC, Emmanoulidou E, Zheng Y, Booth H, Bogetofte H, Lang C, Ryan BJ, Sardi SP, Badger J, Vowles J, Evetts S, Tofaris GK, Vekrellis K, Talbot K, Hu MT, James W, Cowley SA, Wade-Martins R.

Stem Cell Reports. 2016 Mar 8;6(3):342-56. doi: 10.1016/j.stemcr.2016.01.013. Epub 2016 Feb 18.

29.

Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species.

Huguet-Tapia JC, Lefebure T, Badger JH, Guan D, Pettis GS, Stanhope MJ, Loria R.

Appl Environ Microbiol. 2016 Jan 29;82(7):2146-2155. doi: 10.1128/AEM.03504-15.

30.

Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters.

Chen H, Brinkac LM, Mishra P, Li N, Lymperopoulou DS, Dickerson TL, Gordon-Bradley N, Williams HN, Badger JH.

Stand Genomic Sci. 2015 Mar 24;10:11. doi: 10.1186/1944-3277-10-11. eCollection 2015.

31.

A postoperative blue rash: indigo carmine dye extravasation.

Chu JN, Lazar J, Badger J.

Int J Dermatol. 2015 Sep;54(9):e371-2. doi: 10.1111/ijd.12871. Epub 2015 Jul 14. No abstract available.

PMID:
26173378
32.

Cysteine specific targeting of the functionally distinct peroxiredoxin and glutaredoxin proteins by the investigational disulfide BNP7787.

Parker AR, Petluru PN, Nienaber VL, Badger J, Leverett BD, Jair K, Sridhar V, Logan C, Ayala PY, Kochat H, Hausheer FH.

Molecules. 2015 Mar 18;20(3):4928-50. doi: 10.3390/molecules20034928.

33.

Novel covalent modification of human anaplastic lymphoma kinase (ALK) and potentiation of crizotinib-mediated inhibition of ALK activity by BNP7787.

Parker AR, Petluru PN, Nienaber VL, Zhao M, Ayala PY, Badger J, Chie-Leon B, Sridhar V, Logan C, Kochat H, Hausheer FH.

Onco Targets Ther. 2015 Feb 4;8:375-83. doi: 10.2147/OTT.S73690. eCollection 2015.

34.

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria).

Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA.

Genome Announc. 2015 Jan 29;3(1). pii: e01490-14. doi: 10.1128/genomeA.01490-14.

35.

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae).

Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA.

Genome Announc. 2015 Jan 29;3(1). pii: e01489-14. doi: 10.1128/genomeA.01489-14.

36.

Modulation of HIV protease flexibility by the T80N mutation.

Zhou H, Li S, Badger J, Nalivaika E, Cai Y, Foulkes-Murzycki J, Schiffer C, Makowski L.

Proteins. 2015 Nov;83(11):1929-39. doi: 10.1002/prot.24737. Epub 2015 Sep 29.

37.

Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1.

Holland-Moritz HE, Coil DA, Badger JH, Dmitrov GI, Khouri H, Ward NL, Robb FT, Eisen JA.

Genome Announc. 2014 Aug 21;2(4). pii: e00833-14. doi: 10.1128/genomeA.00833-14.

38.

The structure of the catalytic domain of a plant cellulose synthase and its assembly into dimers.

Olek AT, Rayon C, Makowski L, Kim HR, Ciesielski P, Badger J, Paul LN, Ghosh S, Kihara D, Crowley M, Himmel ME, Bolin JT, Carpita NC.

Plant Cell. 2014 Jul;26(7):2996-3009. doi: 10.1105/tpc.114.126862. Epub 2014 Jul 10.

39.

Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265.

Alexiev A, Coil DA, Badger JH, Enticknap J, Ward N, Robb FT, Eisen JA.

Genome Announc. 2014 May 15;2(3). pii: e00470-14. doi: 10.1128/genomeA.00470-14.

40.

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.

41.

Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12.

Coil DA, Badger JH, Forberger HC, Riggs F, Madupu R, Fedorova N, Ward N, Robb FT, Eisen JA.

Genome Announc. 2014 Feb 20;2(1). pii: e00109-14. doi: 10.1128/genomeA.00109-14.

42.

Cross-regulation of Connexin43 and β-catenin influences differentiation of human neural progenitor cells.

Rinaldi F, Hartfield EM, Crompton LA, Badger JL, Glover CP, Kelly CM, Rosser AE, Uney JB, Caldwell MA.

Cell Death Dis. 2014 Jan 23;5:e1017. doi: 10.1038/cddis.2013.546.

43.

Identification and optimization of PDE10A inhibitors using fragment-based screening by nanocalorimetry and X-ray crystallography.

Recht MI, Sridhar V, Badger J, Bounaud PY, Logan C, Chie-Leon B, Nienaber V, Torres FE.

J Biomol Screen. 2014 Apr;19(4):497-507. doi: 10.1177/1087057113516493. Epub 2013 Dec 27.

44.

CaMKII phosphorylation of neuroligin-1 regulates excitatory synapses.

Bemben MA, Shipman SL, Hirai T, Herring BE, Li Y, Badger JD 2nd, Nicoll RA, Diamond JS, Roche KW.

Nat Neurosci. 2014 Jan;17(1):56-64. doi: 10.1038/nn.3601. Epub 2013 Dec 15.

45.

RNA-sequencing from single nuclei.

Grindberg RV, Yee-Greenbaum JL, McConnell MJ, Novotny M, O'Shaughnessy AL, Lambert GM, Araúzo-Bravo MJ, Lee J, Fishman M, Robbins GE, Lin X, Venepally P, Badger JH, Galbraith DW, Gage FH, Lasken RS.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19802-7. doi: 10.1073/pnas.1319700110. Epub 2013 Nov 18.

46.

Reevaluation of the critical-care pain observation tool in intubated adults after cardiac surgery.

Linde SM, Badger JM, Machan JT, Beaudry J, Brucker A, Martin K, Opaluch-Bushy NB, Navedo Roy RD.

Am J Crit Care. 2013 Nov;22(6):491-7. doi: 10.4037/ajcc2013700.

47.

Three-dimensional imaging of crystalline inclusions embedded in intact maize stalks.

Badger J, Lal J, Harder R, Inouye H, Gleber SC, Vogt S, Robinson I, Makowski L.

Sci Rep. 2013 Oct 3;3:2843. doi: 10.1038/srep02843.

48.

Parkinson's disease in a dish - Using stem cells as a molecular tool.

Badger JL, Cordero-Llana O, Hartfield EM, Wade-Martins R.

Neuropharmacology. 2014 Jan;76 Pt A:88-96. doi: 10.1016/j.neuropharm.2013.08.035. Epub 2013 Sep 10. Review.

PMID:
24035919
49.

Stepwise, non-adherent differentiation of human pluripotent stem cells to generate basal forebrain cholinergic neurons via hedgehog signaling.

Crompton LA, Byrne ML, Taylor H, Kerrigan TL, Bru-Mercier G, Badger JL, Barbuti PA, Jo J, Tyler SJ, Allen SJ, Kunath T, Cho K, Caldwell MA.

Stem Cell Res. 2013 Nov;11(3):1206-21. doi: 10.1016/j.scr.2013.08.002. Epub 2013 Aug 9.

50.

Analysis of trafficking, stability and function of human connexin 26 gap junction channels with deafness-causing mutations in the fourth transmembrane helix.

Ambrosi C, Walker AE, Depriest AD, Cone AC, Lu C, Badger J, Skerrett IM, Sosinsky GE.

PLoS One. 2013 Aug 15;8(8):e70916. doi: 10.1371/journal.pone.0070916. eCollection 2013.

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