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Items: 26

1.

Mycobacterium tuberculosis DosR regulon gene Rv2004c contributes to streptomycin resistance and intracellular survival.

Doddam SN, Peddireddy V, Yerra P, Sai Arun PP, Qaria MA, Baddam R, Sarker N, Ahmed N.

Int J Med Microbiol. 2019 Aug 30:151353. doi: 10.1016/j.ijmm.2019.151353. [Epub ahead of print]

PMID:
31521502
2.

Molecular Genetic and Functional Analysis of pks-Harboring, Extra-Intestinal Pathogenic Escherichia coli From India.

Suresh A, Ranjan A, Jadhav S, Hussain A, Shaik S, Alam M, Baddam R, Wieler LH, Ahmed N.

Front Microbiol. 2018 Nov 15;9:2631. doi: 10.3389/fmicb.2018.02631. eCollection 2018.

3.

Risk of Venous Thromboembolic Events in Patients With Cancer Treated With Aflibercept: A Systematic Review and Meta-Analysis of Randomized Controlled Trials.

Kanukula R, Ganta S, Sirumalla Y, Salam A, Baddam R, Pasupuleti BC.

Am J Ther. 2019 Jul/Aug;26(4):e549-e552. doi: 10.1097/MJT.0000000000000805. No abstract available.

PMID:
29965804
4.

Author Correction: Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis.

Baddam R, Kumar N, Wieler LH, Lankapalli AK, Ahmed N, Peacock SJ, Semmler T.

Sci Rep. 2018 May 15;8(1):7892. doi: 10.1038/s41598-018-25809-7.

5.

Quantitative trait loci (QTLs) for water use and crop production traits co-locate with major QTL for tolerance to water deficit in a fine-mapping population of pearl millet (Pennisetum glaucum L. R.Br.).

Tharanya M, Kholova J, Sivasakthi K, Seghal D, Hash CT, Raj B, Srivastava RK, Baddam R, Thirunalasundari T, Yadav R, Vadez V.

Theor Appl Genet. 2018 Jul;131(7):1509-1529. doi: 10.1007/s00122-018-3094-6. Epub 2018 Apr 21.

PMID:
29679097
6.

Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis.

Baddam R, Kumar N, Wieler LH, Lankapalli AK, Ahmed N, Peacock SJ, Semmler T.

Sci Rep. 2018 Mar 15;8(1):4628. doi: 10.1038/s41598-018-22883-9. Erratum in: Sci Rep. 2018 May 15;8(1):7892.

7.

Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome.

Sivasakthi K, Thudi M, Tharanya M, Kale SM, Kholová J, Halime MH, Jaganathan D, Baddam R, Thirunalasundari T, Gaur PM, Varshney RK, Vadez V.

BMC Plant Biol. 2018 Feb 6;18(1):29. doi: 10.1186/s12870-018-1245-1.

8.

Risk of Transmission of Antimicrobial Resistant Escherichia coli from Commercial Broiler and Free-Range Retail Chicken in India.

Hussain A, Shaik S, Ranjan A, Nandanwar N, Tiwari SK, Majid M, Baddam R, Qureshi IA, Semmler T, Wieler LH, Islam MA, Chakravortty D, Ahmed N.

Front Microbiol. 2017 Nov 13;8:2120. doi: 10.3389/fmicb.2017.02120. eCollection 2017.

9.

Comparative Genomic Analysis of Globally Dominant ST131 Clone with Other Epidemiologically Successful Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages.

Shaik S, Ranjan A, Tiwari SK, Hussain A, Nandanwar N, Kumar N, Jadhav S, Semmler T, Baddam R, Islam MA, Alam M, Wieler LH, Watanabe H, Ahmed N.

MBio. 2017 Oct 24;8(5). pii: e01596-17. doi: 10.1128/mBio.01596-17.

10.

Acidogenic Digestion of Pre-pulping Extracts for Production of Fuels and Bioproducts Via Carboxylate Platform Processing.

Baddam R, van Walsum GP.

Appl Biochem Biotechnol. 2017 Jul;182(3):1076-1094. doi: 10.1007/s12010-016-2383-2. Epub 2017 Jan 11.

PMID:
28078649
11.

Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India.

Qumar S, Majid M, Kumar N, Tiwari SK, Semmler T, Devi S, Baddam R, Hussain A, Shaik S, Ahmed N.

Appl Environ Microbiol. 2016 Dec 15;83(1). pii: e02305-16. doi: 10.1128/AEM.02305-16. Print 2017 Jan 1.

12.

Contig-Layout-Authenticator (CLA): A Combinatorial Approach to Ordering and Scaffolding of Bacterial Contigs for Comparative Genomics and Molecular Epidemiology.

Shaik S, Kumar N, Lankapalli AK, Tiwari SK, Baddam R, Ahmed N.

PLoS One. 2016 Jun 1;11(6):e0155459. doi: 10.1371/journal.pone.0155459. eCollection 2016.

13.

Clonal spread and interspecies transmission of clinically relevant ESBL-producing Escherichia coli of ST410--another successful pandemic clone?

Schaufler K, Semmler T, Wieler LH, Wöhrmann M, Baddam R, Ahmed N, Müller K, Kola A, Fruth A, Ewers C, Guenther S.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv155. doi: 10.1093/femsec/fiv155. Epub 2015 Dec 9.

PMID:
26656065
14.

Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones.

Baddam R, Kumar N, Shaik S, Lankapalli AK, Ahmed N.

Sci Rep. 2014 Dec 12;4:7457. doi: 10.1038/srep07457.

15.

Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution.

Kumar N, Mariappan V, Baddam R, Lankapalli AK, Shaik S, Goh KL, Loke MF, Perkins T, Benghezal M, Hasnain SE, Vadivelu J, Marshall BJ, Ahmed N.

Nucleic Acids Res. 2015 Jan;43(1):324-35. doi: 10.1093/nar/gku1271. Epub 2014 Dec 1.

16.

Genomes of Two Clinical Isolates of Mycobacterium tuberculosis from Odisha, India.

Majid M, Kumar N, Qureshi A, Yerra P, Kumar A, Kumar MK, Tiruvayipati S, Baddam R, Shaik S, Srikantam A, Ahmed N.

Genome Announc. 2014 Mar 20;2(2). pii: e00199-14. doi: 10.1128/genomeA.00199-14.

17.

Genome anatomy of the gastrointestinal pathogen, Vibrio parahaemolyticus of crustacean origin.

Tiruvayipati S, Bhassu S, Kumar N, Baddam R, Shaik S, Gurindapalli AK, Thong KL, Ahmed N.

Gut Pathog. 2013 Dec 11;5(1):37. doi: 10.1186/1757-4749-5-37.

18.

Genome sequencing and analysis of Salmonella enterica serovar Typhi strain CR0063 representing a carrier individual during an outbreak of typhoid fever in Kelantan, Malaysia.

Baddam R, Kumar N, Shaik S, Suma T, Ngoi ST, Thong KL, Ahmed N.

Gut Pathog. 2012 Dec 13;4(1):20. doi: 10.1186/1757-4749-4-20.

19.

Genome sequence and comparative pathogenomics analysis of a Salmonella enterica Serovar Typhi strain associated with a typhoid carrier in Malaysia.

Yap KP, Gan HM, Teh CS, Baddam R, Chai LC, Kumar N, Tiruvayipati SA, Ahmed N, Thong KL.

J Bacteriol. 2012 Nov;194(21):5970-1. doi: 10.1128/JB.01416-12.

20.

Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two Helicobacter pylori isolates from duodenal ulcer patients in India.

Kumar N, Mukhopadhyay AK, Patra R, De R, Baddam R, Shaik S, Alam J, Tiruvayipati S, Ahmed N.

J Bacteriol. 2012 Nov;194(21):5963-4. doi: 10.1128/JB.01371-12.

21.

Insights from the genome sequence of a Salmonella enterica serovar Typhi strain associated with a sporadic case of typhoid fever in Malaysia.

Yap KP, Teh CS, Baddam R, Chai LC, Kumar N, Avasthi TS, Ahmed N, Thong KL.

J Bacteriol. 2012 Sep;194(18):5124-5. doi: 10.1128/JB.01062-12.

22.

Whole-genome sequences and comparative genomics of Salmonella enterica serovar Typhi isolates from patients with fatal and nonfatal typhoid fever in Papua New Guinea.

Baddam R, Thong KL, Avasthi TS, Shaik S, Yap KP, Teh CS, Chai LC, Kumar N, Ahmed N.

J Bacteriol. 2012 Sep;194(18):5122-3. doi: 10.1128/JB.01051-12.

23.

Genetic fine structure of a Salmonella enterica serovar Typhi strain associated with the 2005 outbreak of typhoid fever in Kelantan, Malaysia.

Baddam R, Kumar N, Thong KL, Ngoi ST, Teh CS, Yap KP, Chai LC, Avasthi TS, Ahmed N.

J Bacteriol. 2012 Jul;194(13):3565-6. doi: 10.1128/JB.00581-12.

24.

Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide.

Siddavattam D, Karegoudar TB, Mudde SK, Kumar N, Baddam R, Avasthi TS, Ahmed N.

J Bacteriol. 2011 Oct;193(19):5598-9. doi: 10.1128/JB.05667-11.

25.

Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India.

Avasthi TS, Kumar N, Baddam R, Hussain A, Nandanwar N, Jadhav S, Ahmed N.

J Bacteriol. 2011 Aug;193(16):4272-3. doi: 10.1128/JB.05413-11. Epub 2011 Jun 17.

26.

Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient.

Avasthi TS, Devi SH, Taylor TD, Kumar N, Baddam R, Kondo S, Suzuki Y, Lamouliatte H, Mégraud F, Ahmed N.

J Bacteriol. 2011 Jul;193(13):3385-6. doi: 10.1128/JB.05006-11. Epub 2011 Apr 22.

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