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Items: 16

1.

Advances in Clinical Sample Preparation for Identification and Characterization of Bacterial Pathogens Using Metagenomics.

Bachmann NL, Rockett RJ, Timms VJ, Sintchenko V.

Front Public Health. 2018 Dec 12;6:363. doi: 10.3389/fpubh.2018.00363. eCollection 2018. Review.

2.

Genome-wide analysis of Streptococcus pneumoniae serogroup 19 in the decade after the introduction of pneumococcal conjugate vaccines in Australia.

Rockett RJ, Oftadeh S, Bachmann NL, Timms VJ, Kong F, Gilbert GL, Sintchenko V.

Sci Rep. 2018 Nov 16;8(1):16969. doi: 10.1038/s41598-018-35270-1.

3.

Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney (New South Wales, Australia) to an Emerging Clone of Legionella pneumophila Sequence Type 211.

Timms VJ, Rockett R, Bachmann NL, Martinez E, Wang Q, Chen SC, Jeoffreys N, Howard PJ, Smith A, Adamson S, Gilmour R, Sheppeard V, Sintchenko V.

Appl Environ Microbiol. 2018 Feb 14;84(5). pii: e02020-17. doi: 10.1128/AEM.02020-17. Print 2018 Mar 1.

4.

Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria.

Taylor-Brown A, Pillonel T, Bridle A, Qi W, Bachmann NL, Miller TL, Greub G, Nowak B, Seth-Smith HMB, Vaughan L, Polkinghorne A.

Environ Microbiol. 2017 May;19(5):1899-1913. doi: 10.1111/1462-2920.13694. Epub 2017 Mar 2.

PMID:
28205377
5.

Culture-independent genomic characterisation of Candidatus Chlamydia sanzinia, a novel uncultivated bacterium infecting snakes.

Taylor-Brown A, Bachmann NL, Borel N, Polkinghorne A.

BMC Genomics. 2016 Sep 5;17:710. doi: 10.1186/s12864-016-3055-x.

6.

Australian human and parrot Chlamydia psittaci strains cluster within the highly virulent 6BC clade of this important zoonotic pathogen.

Branley J, Bachmann NL, Jelocnik M, Myers GS, Polkinghorne A.

Sci Rep. 2016 Aug 4;6:30019. doi: 10.1038/srep30019.

7.

Molecular characterisation of the Chlamydia pecorum plasmid from porcine, ovine, bovine, and koala strains indicates plasmid-strain co-evolution.

Jelocnik M, Bachmann NL, Seth-Smith H, Thomson NR, Timms P, Polkinghorne AM.

PeerJ. 2016 Feb 4;4:e1661. doi: 10.7717/peerj.1661. eCollection 2016.

8.

Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas.

Jelocnik M, Bachmann NL, Kaltenboeck B, Waugh C, Woolford L, Speight KN, Gillett A, Higgins DP, Flanagan C, Myers GS, Timms P, Polkinghorne A.

BMC Genomics. 2015 Nov 4;16:893. doi: 10.1186/s12864-015-2053-8.

9.

HapFlow: visualizing haplotypes in sequencing data.

Sullivan MJ, Bachmann NL, Timms P, Polkinghorne A.

Bioinformatics. 2016 Feb 1;32(3):441-3. doi: 10.1093/bioinformatics/btv551. Epub 2015 Oct 7.

PMID:
26449930
10.

Comparative genomic analysis of human Chlamydia pneumoniae isolates from respiratory, brain and cardiac tissues.

Roulis E, Bachmann NL, Myers GS, Huston W, Summersgill J, Hudson A, Dreses-Werringloer U, Polkinghorne A, Timms P.

Genomics. 2015 Dec;106(6):373-83. doi: 10.1016/j.ygeno.2015.09.008. Epub 2015 Sep 28.

11.

Genomic Comparison of Translocating and Non-Translocating Escherichia coli.

Bachmann NL, Katouli M, Polkinghorne A.

PLoS One. 2015 Aug 28;10(8):e0137131. doi: 10.1371/journal.pone.0137131. eCollection 2015.

12.

Culture-independent genome sequencing of clinical samples reveals an unexpected heterogeneity of infections by Chlamydia pecorum.

Bachmann NL, Sullivan MJ, Jelocnik M, Myers GS, Timms P, Polkinghorne A.

J Clin Microbiol. 2015 May;53(5):1573-81. doi: 10.1128/JCM.03534-14. Epub 2015 Mar 4.

13.

Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum.

Bachmann NL, Fraser TA, Bertelli C, Jelocnik M, Gillett A, Funnell O, Flanagan C, Myers GS, Timms P, Polkinghorne A.

BMC Genomics. 2014 Aug 8;15:667. doi: 10.1186/1471-2164-15-667.

14.

Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow.

Bachmann NL, Petty NK, Ben Zakour NL, Szubert JM, Savill J, Beatson SA.

BMC Genomics. 2014 May 21;15:389. doi: 10.1186/1471-2164-15-389.

15.

Chlamydia genomics: providing novel insights into chlamydial biology.

Bachmann NL, Polkinghorne A, Timms P.

Trends Microbiol. 2014 Aug;22(8):464-72. doi: 10.1016/j.tim.2014.04.013. Epub 2014 Jun 2.

PMID:
24882432
16.

Genome sequence of the emerging pathogen Aeromonas caviae.

Beatson SA, das Gra├žas de Luna M, Bachmann NL, Alikhan NF, Hanks KR, Sullivan MJ, Wee BA, Freitas-Almeida AC, Dos Santos PA, de Melo JT, Squire DJ, Cunningham AF, Fitzgerald JR, Henderson IR.

J Bacteriol. 2011 Mar;193(5):1286-7. doi: 10.1128/JB.01337-10. Epub 2010 Dec 23.

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